Wall clock time and date at job start Tue Mar 31 2020 04:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48503 * 109.47027 * 240.00314 * 3 2 1 5 5 H 1.48500 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46978 * 120.00511 * 3 2 1 7 7 C 1.39890 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99687 * 197.92745 * 7 2 1 9 9 C 1.41216 * 120.00294 * 17.91707 * 7 2 1 10 10 C 1.40834 * 120.17904 * 204.55197 * 9 7 2 11 11 C 1.36435 * 119.81035 * 180.02562 * 10 9 7 12 12 C 1.39313 * 120.18682 * 359.97438 * 11 10 9 13 13 O 1.35669 * 119.82201 * 179.97438 * 12 11 10 14 14 C 1.42898 * 117.00442 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47375 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47169 * 179.97438 * 15 14 13 17 17 C 1.35610 * 119.26417 * 90.00173 * 16 15 14 18 18 C 1.35088 * 120.70009 * 179.97438 * 17 16 15 19 19 C 1.41489 * 119.24381 * 359.97438 * 18 17 16 20 20 O 1.22251 * 120.67800 * 180.02562 * 19 18 17 21 21 C 1.41477 * 118.63768 * 0.02562 * 19 18 17 22 22 N 1.48017 * 120.37471 * 180.02562 * 21 19 18 23 23 O 1.21804 * 119.99958 * 179.97438 * 22 21 19 24 24 O 1.21798 * 119.99633 * 359.97438 * 22 21 19 25 25 C 1.35088 * 119.24939 * 359.74474 * 21 19 18 26 26 C 1.39316 * 120.36369 * 0.25812 * 12 11 10 27 27 C 1.36441 * 120.18193 * 359.48823 * 26 12 11 28 28 H 0.97006 * 119.99353 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.09807 * 359.97438 * 10 9 7 30 30 H 1.07999 * 119.91225 * 179.97438 * 11 10 9 31 31 H 1.09002 * 109.46644 * 299.99527 * 14 13 12 32 32 H 1.08995 * 109.47113 * 59.99766 * 14 13 12 33 33 H 1.09002 * 109.47092 * 299.99973 * 15 14 13 34 34 H 1.09004 * 109.47127 * 59.99631 * 15 14 13 35 35 H 1.07999 * 119.64759 * 359.97438 * 17 16 15 36 36 H 1.07993 * 120.38035 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.65289 * 180.26923 * 25 21 19 38 38 H 1.07996 * 119.90742 * 179.71507 * 26 12 11 39 39 H 1.08002 * 120.09070 * 180.25604 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0966 1.6963 -1.2126 5 1 1.2780 2.7465 0.0006 6 1 3.0967 1.6962 1.2124 7 6 2.0082 -1.2115 -0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3535 -2.4047 -0.3773 10 6 1.8262 -3.6481 0.0852 11 6 1.1881 -4.7962 -0.2839 12 6 0.0718 -4.7409 -1.1154 13 8 -0.5567 -5.8871 -1.4783 14 6 -1.6948 -5.7605 -2.3330 15 6 -2.2652 -7.1484 -2.6319 16 7 -3.4324 -7.0185 -3.5077 17 6 -3.2583 -7.0441 -4.8523 18 6 -4.3142 -6.9272 -5.6868 19 6 -5.6118 -6.7775 -5.1429 20 8 -6.5859 -6.6701 -5.8737 21 6 -5.7588 -6.7548 -3.7360 22 7 -7.0985 -6.6006 -3.1258 23 8 -7.2173 -6.5824 -1.9137 24 8 -8.0822 -6.4920 -3.8358 25 6 -4.6633 -6.8811 -2.9557 26 6 -0.3994 -3.5153 -1.5812 27 6 0.2241 -2.3575 -1.2173 28 1 -0.4849 0.8402 0.0004 29 1 2.6917 -3.6928 0.7296 30 1 1.5495 -5.7506 0.0695 31 1 -2.4541 -5.1539 -1.8394 32 1 -1.3972 -5.2818 -3.2659 33 1 -1.5057 -7.7547 -3.1256 34 1 -2.5627 -7.6276 -1.6992 35 1 -2.2650 -7.1590 -5.2604 36 1 -4.1698 -6.9487 -6.7568 37 1 -4.7685 -6.8690 -1.8809 38 1 -1.2627 -3.4814 -2.2292 39 1 -0.1449 -1.4080 -1.5760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089783465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:25 Heat of formation + Delta-G solvation = -12.997143 kcal Electronic energy + Delta-G solvation = -26360.316918 eV Core-core repulsion = 22237.515359 eV Total energy + Delta-G solvation = -4122.801559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.48112 -41.40452 -39.24276 -38.57045 -36.74010 -36.37328 -34.03861 -33.42155 -32.95300 -30.22623 -29.85146 -28.90308 -27.03908 -25.17145 -24.39237 -23.88410 -23.01230 -21.30580 -20.64139 -19.60399 -19.02215 -17.98050 -17.63190 -17.57274 -17.52923 -17.23631 -16.29067 -16.17499 -15.92075 -15.37668 -15.04645 -14.77412 -14.17423 -14.05390 -13.92654 -13.45047 -13.19446 -13.08367 -12.71516 -12.52159 -12.05849 -11.67181 -11.54192 -11.52309 -11.32605 -11.24019 -11.20013 -11.05458 -10.80734 -10.75834 -10.23235 -10.02863 -10.00755 -9.60507 -9.20649 -8.95187 -7.88910 -7.27386 -6.91488 -4.45323 -0.32247 0.55234 1.00916 1.16595 1.81501 2.57626 2.75476 2.96525 2.97966 2.99279 3.07094 3.36859 3.66314 3.81321 3.82541 3.92334 4.09643 4.26774 4.42330 4.48103 4.66082 4.70618 4.95879 5.15859 5.25907 5.42489 5.46310 5.69967 5.83771 5.91048 6.02911 6.30914 6.41551 6.67260 6.86551 7.07078 7.15553 7.33237 7.37127 7.66239 7.69926 7.79406 7.90876 8.15226 8.42106 8.70771 8.76458 10.03240 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.015844 B = 0.002320 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.771106 B =12067.932981 C =12794.417008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.092 3.908 10 C -0.200 4.200 11 C -0.104 4.104 12 C -0.025 4.025 13 O -0.323 6.323 14 C 0.049 3.951 15 C 0.087 3.913 16 N -0.452 5.452 17 C 0.127 3.873 18 C -0.243 4.243 19 C 0.403 3.597 20 O -0.469 6.469 21 C -0.222 4.222 22 N 0.055 4.945 23 O -0.197 6.197 24 O -0.127 6.127 25 C 0.245 3.755 26 C -0.169 4.169 27 C -0.136 4.136 28 H 0.283 0.717 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.184 0.816 36 H 0.170 0.830 37 H 0.194 0.806 38 H 0.091 0.909 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 -12.729 -6.793 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.090 3.910 10 C -0.219 4.219 11 C -0.122 4.122 12 C -0.067 4.067 13 O -0.238 6.238 14 C -0.029 4.029 15 C -0.033 4.033 16 N -0.139 5.139 17 C 0.005 3.995 18 C -0.267 4.267 19 C 0.288 3.712 20 O -0.349 6.349 21 C -0.316 4.316 22 N 0.571 4.429 23 O -0.401 6.401 24 O -0.349 6.349 25 C 0.109 3.891 26 C -0.188 4.188 27 C -0.156 4.156 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.201 0.799 36 H 0.188 0.812 37 H 0.211 0.789 38 H 0.110 0.890 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.970 -12.782 -7.236 14.819 hybrid contribution -0.026 1.122 0.217 1.143 sum -1.996 -11.659 -7.020 13.755 Atomic orbital electron populations 1.69817 1.07611 1.29553 1.34998 1.25921 0.94755 1.01452 0.92186 0.86339 0.80152 0.80070 0.80065 1.18783 1.20270 1.18901 1.19500 0.98227 0.91214 1.40014 0.90283 1.17622 0.91595 0.92253 0.89538 1.20606 1.03414 0.92150 1.05753 1.19585 0.95154 0.97755 0.99738 1.18415 0.98358 0.83138 1.06791 1.85690 1.41424 1.31721 1.64978 1.22636 0.90042 0.94467 0.95728 1.22294 0.85722 0.99511 0.95775 1.43320 1.06541 1.57084 1.06954 1.22239 1.02113 0.94156 0.80985 1.22544 0.91942 1.09915 1.02272 1.16802 0.90626 0.77857 0.85871 1.90973 1.40753 1.41543 1.61680 1.22404 0.84166 1.28174 0.96825 1.42785 1.01972 0.97708 1.00476 1.94526 1.92488 1.56524 0.96576 1.94627 1.27281 1.51748 1.61281 1.21753 0.82782 0.83498 1.01084 1.20555 1.01247 0.92944 1.04010 1.20952 0.98607 0.96528 0.99495 0.90655 0.87991 0.88379 0.92033 0.91958 0.86188 0.86520 0.79923 0.81250 0.78870 0.89046 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.47 10.96 55.54 0.61 -18.86 16 2 C 0.07 1.77 5.13 -17.34 -0.09 1.68 16 3 Si 0.91 17.67 29.60 -169.99 -5.03 12.64 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.46 -11.43 9.04 -37.83 -0.34 -11.77 16 8 H 0.08 1.87 7.91 -52.48 -0.41 1.46 16 9 C 0.09 2.28 5.57 -106.80 -0.60 1.69 16 10 C -0.20 -4.47 9.74 -39.25 -0.38 -4.85 16 11 C -0.10 -2.11 9.92 -39.83 -0.40 -2.51 16 12 C -0.02 -0.48 6.71 -38.78 -0.26 -0.74 16 13 O -0.32 -4.89 10.12 -18.71 -0.19 -5.08 16 14 C 0.05 0.50 5.06 37.16 0.19 0.68 16 15 C 0.09 0.44 5.92 -4.04 -0.02 0.42 16 16 N -0.45 -2.51 2.60 -117.42 -0.31 -2.82 16 17 C 0.13 0.61 10.25 -17.00 -0.17 0.44 16 18 C -0.24 -1.85 10.01 -39.46 -0.39 -2.25 16 19 C 0.40 5.03 6.76 -37.11 -0.25 4.78 16 20 O -0.47 -7.86 16.15 -16.69 -0.27 -8.13 16 21 C -0.22 -2.63 6.86 -79.83 -0.55 -3.17 16 22 N 0.05 0.83 4.45 34.02 0.15 0.98 16 23 O -0.20 -2.89 18.43 -29.46 -0.54 -3.44 16 24 O -0.13 -2.20 17.51 -36.28 -0.64 -2.84 16 25 C 0.25 1.87 9.79 -17.01 -0.17 1.71 16 26 C -0.17 -3.49 8.96 -39.83 -0.36 -3.85 16 27 C -0.14 -3.26 8.64 -39.25 -0.34 -3.59 16 28 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 29 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.06 0.68 7.66 -51.93 -0.40 0.29 16 32 H 0.06 0.63 7.63 -51.93 -0.40 0.23 16 33 H 0.12 0.36 7.99 -51.93 -0.42 -0.06 16 34 H 0.12 0.44 7.99 -51.93 -0.41 0.03 16 35 H 0.18 0.20 8.02 -52.49 -0.42 -0.22 16 36 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.19 1.08 7.51 -52.49 -0.39 0.68 16 38 H 0.09 1.65 6.27 -52.49 -0.33 1.33 16 39 H 0.12 3.03 6.16 -52.49 -0.32 2.70 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -32.85 349.14 -8.99 -41.85 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -3.91 Total: 1.77 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -4.13 Total: -21.34 kcal Atomic # 7 Polarization: -21.16 SS G_CDS: 0.45 Total: -20.70 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -1.64 Total: -19.48 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.85 -8.99 -41.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089783465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.850 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds