Wall clock time and date at job start Tue Mar 31 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46647 * 2 1 4 4 N 1.46507 * 109.47042 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99933 * 275.00209 * 4 3 2 6 6 H 1.07993 * 119.99867 * 141.19141 * 5 4 3 7 7 C 1.38817 * 119.99560 * 321.18824 * 5 4 3 8 8 N 1.31614 * 120.00246 * 339.12794 * 7 5 4 9 9 Si 1.86801 * 119.99384 * 159.12636 * 7 5 4 10 10 H 1.48500 * 109.47117 * 60.00357 * 9 7 5 11 11 H 1.48503 * 109.47133 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47352 * 299.99913 * 9 7 5 13 13 S 1.65601 * 120.00054 * 94.99579 * 4 3 2 14 14 O 1.42100 * 106.39885 * 151.17179 * 13 4 3 15 15 O 1.42104 * 106.39806 * 18.25484 * 13 4 3 16 16 C 1.76197 * 107.21913 * 264.71409 * 13 4 3 17 17 C 1.39799 * 126.07710 * 269.95471 * 16 13 4 18 18 C 1.37997 * 106.96863 * 179.77552 * 17 16 13 19 19 C 1.46490 * 126.26114 * 180.25574 * 18 17 16 20 20 O 1.21616 * 120.00252 * 0.19355 * 19 18 17 21 21 O 1.34892 * 119.99773 * 180.19013 * 19 18 17 22 22 C 1.45203 * 117.00191 * 179.97438 * 21 19 18 23 23 N 1.37697 * 107.47229 * 0.41769 * 18 17 16 24 24 C 1.46493 * 125.63339 * 179.83482 * 23 18 17 25 25 C 1.34957 * 108.72752 * 359.57676 * 23 18 17 26 26 H 1.09005 * 109.47182 * 299.99666 * 1 2 3 27 27 H 1.08996 * 109.47311 * 60.00336 * 1 2 3 28 28 H 1.08997 * 109.46741 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46985 * 239.99992 * 2 1 3 30 30 H 1.08996 * 109.47311 * 119.99664 * 2 1 3 31 31 H 1.08998 * 109.47435 * 60.00267 * 3 2 1 32 32 H 1.08997 * 109.47466 * 300.00087 * 3 2 1 33 33 H 0.97001 * 120.00102 * 180.02562 * 8 7 5 34 34 H 1.08004 * 126.51698 * 0.04131 * 17 16 13 35 35 H 1.09001 * 109.46327 * 60.00504 * 22 21 19 36 36 H 1.08999 * 109.46951 * 180.02562 * 22 21 19 37 37 H 1.08992 * 109.47090 * 300.00499 * 22 21 19 38 38 H 1.09000 * 109.47581 * 269.71935 * 24 23 18 39 39 H 1.09007 * 109.47241 * 149.72005 * 24 23 18 40 40 H 1.08998 * 109.47582 * 29.72524 * 24 23 18 41 41 H 1.08008 * 125.50725 * 180.28238 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.3391 1.1805 6 1 5.0914 0.7462 1.2317 7 6 3.7263 1.9963 2.3118 8 7 2.9060 3.0182 2.1893 9 14 4.2664 1.4301 4.0080 10 1 5.7441 1.5296 4.1159 11 1 3.6361 2.2907 5.0412 12 1 3.8487 0.0202 4.2156 13 16 4.3324 1.5678 -1.4296 14 8 5.5673 2.2009 -1.1241 15 8 3.4114 2.0799 -2.3830 16 6 4.7274 -0.0690 -1.9488 17 6 5.8869 -0.7787 -1.6229 18 6 5.7871 -2.0139 -2.2301 19 6 6.7723 -3.0957 -2.1607 20 8 7.7939 -2.9475 -1.5176 21 8 6.5465 -4.2563 -2.8100 22 6 7.5662 -5.2839 -2.6974 23 7 4.5935 -2.0421 -2.9162 24 6 4.0898 -3.1679 -3.7067 25 6 3.9618 -0.8632 -2.7353 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 2.5822 3.4777 2.9799 34 1 6.7035 -0.4287 -1.0088 35 1 7.6948 -5.5548 -1.6495 36 1 7.2607 -6.1627 -3.2654 37 1 8.5086 -4.9055 -3.0932 38 1 4.4309 -3.0697 -4.7373 39 1 3.0000 -3.1695 -3.6834 40 1 4.4635 -4.1021 -3.2877 41 1 3.0011 -0.5962 -3.1502 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092367801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:26 Heat of formation + Delta-G solvation = -103.021779 kcal Electronic energy + Delta-G solvation = -27339.949567 eV Core-core repulsion = 23348.688198 eV Total energy + Delta-G solvation = -3991.261369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.51165 -39.93342 -36.56589 -36.14957 -35.85030 -34.52857 -33.06177 -32.57668 -30.77837 -30.08748 -27.69795 -26.80315 -25.79586 -23.61345 -23.34569 -21.32150 -20.56223 -20.03738 -18.68973 -18.10916 -17.10827 -16.74993 -16.63504 -16.17491 -15.77217 -15.30495 -15.10899 -14.61864 -14.30741 -14.09265 -13.92103 -13.45917 -13.44049 -13.19508 -12.87009 -12.77207 -12.52782 -12.34787 -12.14630 -11.80092 -11.63240 -11.42023 -11.02664 -11.02578 -10.91757 -10.82743 -10.79776 -10.68701 -10.53223 -10.36063 -10.28071 -10.00535 -9.66972 -9.07165 -8.86696 -8.43431 -7.60199 -6.18090 -3.89552 1.19753 1.65490 2.27833 2.42577 2.75343 3.06037 3.29249 3.33177 3.37194 4.25897 4.53412 4.60656 4.65525 4.84648 4.88805 4.90682 4.94900 4.98487 5.18017 5.23086 5.26384 5.32735 5.66583 5.72586 5.77676 5.80198 5.97399 6.12647 6.22075 6.37705 6.45786 6.56476 6.63539 6.72446 6.79659 6.96498 7.04361 7.39052 7.49694 7.63751 7.85829 8.51982 9.10681 9.49317 10.85262 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.012635 B = 0.004607 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.581428 B = 6075.704028 C = 6695.871807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.841 5.841 5 C -0.287 4.287 6 H 0.087 0.913 7 C 0.044 3.956 8 N -0.859 5.859 9 Si 0.911 3.089 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.275 1.275 13 S 2.662 3.338 14 O -0.970 6.970 15 O -1.002 7.002 16 C -0.733 4.733 17 C 0.008 3.992 18 C -0.071 4.071 19 C 0.541 3.459 20 O -0.497 6.497 21 O -0.366 6.366 22 C 0.037 3.963 23 N -0.416 5.416 24 C 0.062 3.938 25 C 0.146 3.854 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.267 0.733 34 H 0.165 0.835 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 -15.430 -9.655 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C -0.007 4.007 4 N -0.672 5.672 5 C -0.422 4.422 6 H 0.105 0.895 7 C -0.164 4.164 8 N -0.498 5.498 9 Si 0.738 3.262 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.201 1.201 13 S 2.756 3.244 14 O -0.960 6.960 15 O -0.992 6.992 16 C -0.822 4.822 17 C -0.018 4.018 18 C -0.178 4.178 19 C 0.387 3.613 20 O -0.384 6.384 21 O -0.284 6.284 22 C -0.057 4.057 23 N -0.090 5.090 24 C -0.079 4.079 25 C 0.003 3.997 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.183 0.817 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.687 -14.926 -10.146 18.061 hybrid contribution 0.373 -1.230 0.886 1.561 sum -0.314 -16.156 -9.260 18.625 Atomic orbital electron populations 1.21696 0.96781 1.00313 1.01632 1.21970 0.94461 1.00040 1.01311 1.21339 0.80656 0.94317 1.04380 1.52492 1.11271 1.85904 1.17512 1.18952 1.10538 1.27216 0.85543 0.89525 1.25345 0.97434 0.93738 0.99852 1.69978 1.32748 1.16951 1.30134 0.86259 0.79273 0.78612 0.82083 1.19654 1.21040 1.20075 1.03727 0.73747 0.72831 0.74052 1.93442 1.46439 1.71968 1.84119 1.93394 1.64180 1.77541 1.64092 1.31813 1.04864 1.27911 1.17586 1.21046 0.96415 0.89213 0.95130 1.19393 0.90379 0.96856 1.11184 1.19706 0.84576 0.80661 0.76356 1.90918 1.26760 1.80840 1.39896 1.86576 1.48574 1.24810 1.68393 1.23261 0.90677 0.88648 1.03066 1.44143 1.15181 1.13043 1.36608 1.22355 1.00973 0.88502 0.96030 1.21755 0.97748 0.83553 0.96645 0.92725 0.93132 0.93848 0.93953 0.91519 0.87307 0.92154 0.92327 0.81732 0.91690 0.88118 0.91758 0.90176 0.89154 0.88192 0.79607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.14 -2.50 6.23 -26.73 -0.17 -2.66 16 3 C 0.12 2.65 5.28 -4.04 -0.02 2.63 16 4 N -0.84 -20.35 2.81 -59.91 -0.17 -20.52 16 5 C -0.29 -7.45 8.91 -15.06 -0.13 -7.58 16 6 H 0.09 2.20 7.91 -52.49 -0.42 1.79 16 7 C 0.04 1.14 5.00 -17.43 -0.09 1.05 16 8 N -0.86 -23.07 11.46 55.49 0.64 -22.43 16 9 Si 0.91 20.25 29.60 -169.99 -5.03 15.22 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 13 S 2.66 61.72 5.79 -107.50 -0.62 61.10 16 14 O -0.97 -25.80 17.17 -57.17 -0.98 -26.78 16 15 O -1.00 -23.74 16.31 -57.17 -0.93 -24.67 16 16 C -0.73 -13.98 6.18 -39.98 -0.25 -14.23 16 17 C 0.01 0.14 10.46 -39.09 -0.41 -0.27 16 18 C -0.07 -1.15 6.88 -82.00 -0.56 -1.71 16 19 C 0.54 8.23 7.92 34.05 0.27 8.50 16 20 O -0.50 -8.77 16.68 -19.35 -0.32 -9.10 16 21 O -0.37 -4.20 7.99 -41.02 -0.33 -4.53 16 22 C 0.04 0.30 10.57 101.05 1.07 1.37 16 23 N -0.42 -5.65 3.15 -120.41 -0.38 -6.03 16 24 C 0.06 0.53 10.57 59.84 0.63 1.16 16 25 C 0.15 2.23 10.63 -17.16 -0.18 2.05 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.69 7.67 -51.93 -0.40 0.30 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.11 2.62 5.56 -51.93 -0.29 2.33 16 32 H 0.06 1.30 6.87 -51.93 -0.36 0.94 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.17 3.12 8.06 -52.48 -0.42 2.70 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.81 6.13 -51.93 -0.32 0.49 16 41 H 0.19 2.30 8.06 -52.48 -0.42 1.87 16 LS Contribution 362.65 15.07 5.47 5.47 Total: -1.00 -34.12 362.65 -7.70 -41.82 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.56 Total: 1.97 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 0.53 Total: -11.51 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.09 Total: -48.98 kcal Atomic # 8 Polarization: -62.51 SS G_CDS: -2.57 Total: -65.08 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Atomic # 16 Polarization: 61.72 SS G_CDS: -0.62 Total: 61.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.12 -7.70 -41.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.201 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds