Wall clock time and date at job start Tue Mar 31 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99945 * 2 1 4 4 H 1.48502 * 109.47235 * 270.85720 * 3 2 1 5 5 H 1.48500 * 109.47394 * 30.85816 * 3 2 1 6 6 H 1.48503 * 109.47436 * 150.85698 * 3 2 1 7 7 C 1.37882 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99589 * 358.71405 * 7 2 1 9 9 C 1.50692 * 120.00245 * 178.71738 * 7 2 1 10 10 C 1.53004 * 115.55264 * 86.67836 * 9 7 2 11 11 O 1.45198 * 109.46916 * 64.76597 * 10 9 7 12 12 C 1.34739 * 116.99834 * 184.21011 * 11 10 9 13 13 O 1.21498 * 120.00373 * 5.19375 * 12 11 10 14 14 C 1.47525 * 120.00069 * 185.19453 * 12 11 10 15 15 C 1.41574 * 126.45409 * 174.98752 * 14 12 11 16 16 C 1.35335 * 105.55962 * 180.23847 * 15 14 12 17 17 N 1.35861 * 107.14241 * 359.59210 * 16 15 14 18 18 C 1.40155 * 124.95807 * 180.13194 * 17 16 15 19 19 C 1.38855 * 120.04040 * 0.04483 * 18 17 16 20 20 C 1.38089 * 119.95486 * 179.79411 * 19 18 17 21 21 C 1.38489 * 120.04380 * 0.48179 * 20 19 18 22 22 F 1.35105 * 119.95747 * 179.76951 * 21 20 19 23 23 C 1.38498 * 120.09009 * 359.74704 * 21 20 19 24 24 C 1.38095 * 120.03654 * 0.02562 * 23 21 20 25 25 N 1.28484 * 110.09282 * 0.42828 * 17 16 15 26 26 C 1.53008 * 117.49899 * 232.34986 * 9 7 2 27 27 C 1.52999 * 117.49861 * 301.00709 * 9 7 2 28 28 H 0.96995 * 120.00098 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46908 * 304.76737 * 10 9 7 30 30 H 1.08998 * 109.46999 * 184.76637 * 10 9 7 31 31 H 1.07994 * 127.21879 * 359.97438 * 15 14 12 32 32 H 1.07999 * 126.43252 * 179.69908 * 16 15 14 33 33 H 1.07999 * 120.02521 * 0.02562 * 19 18 17 34 34 H 1.08007 * 119.97791 * 180.20553 * 20 19 18 35 35 H 1.07998 * 119.98157 * 180.02562 * 23 21 20 36 36 H 1.07996 * 120.01915 * 180.02562 * 24 23 21 37 37 H 1.09001 * 117.49641 * 215.00032 * 26 9 7 38 38 H 1.08993 * 117.49288 * 0.02562 * 26 9 7 39 39 H 1.08996 * 117.49816 * 359.97438 * 27 9 7 40 40 H 1.09006 * 117.50026 * 144.97211 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4785 2.0569 -1.3999 5 1 1.4558 2.6474 0.7181 6 1 3.5557 1.4351 0.6818 7 6 2.0046 -1.1941 -0.0005 8 1 1.4648 -2.1292 0.0200 9 6 3.5112 -1.1942 -0.0297 10 6 4.1978 -1.0995 1.3343 11 8 3.8949 -2.2876 2.1121 12 6 4.3542 -2.3233 3.3783 13 8 4.9078 -1.3507 3.8514 14 6 4.1847 -3.5432 4.1903 15 6 4.6974 -3.7659 5.4910 16 6 4.2985 -5.0140 5.8297 17 7 3.5782 -5.5013 4.7859 18 6 2.9838 -6.7698 4.7430 19 6 3.1093 -7.6332 5.8232 20 6 2.5194 -8.8810 5.7808 21 6 1.8112 -9.2753 4.6579 22 9 1.2386 -10.4983 4.6164 23 6 1.6888 -8.4174 3.5775 24 6 2.2734 -7.1670 3.6180 25 7 3.5266 -4.6319 3.8412 26 6 4.1969 -2.0348 -1.1088 27 6 4.1949 -0.5077 -1.2139 28 1 -0.4850 0.8400 0.0004 29 1 3.8360 -0.2173 1.8627 30 1 5.2759 -1.0222 1.1938 31 1 5.2871 -3.0845 6.0862 32 1 4.5112 -5.5259 6.7566 33 1 3.6649 -7.3276 6.6975 34 1 2.6140 -9.5516 6.6222 35 1 1.1358 -8.7266 2.7028 36 1 2.1774 -6.4981 2.7755 37 1 5.1370 -2.5203 -0.8469 38 1 3.5581 -2.5873 -1.7978 39 1 3.5549 -0.0563 -1.9720 40 1 5.1336 0.0119 -1.0210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096442772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:42 Heat of formation + Delta-G solvation = 20.033821 kcal Electronic energy + Delta-G solvation = -26633.748027 eV Core-core repulsion = 22524.751587 eV Total energy + Delta-G solvation = -4108.996439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.117 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.30753 -43.09699 -39.76446 -39.23794 -37.07958 -35.40492 -33.75785 -32.07636 -32.06487 -30.82915 -29.50276 -27.36676 -25.51598 -24.52054 -23.98334 -22.42538 -21.66355 -21.27737 -20.07231 -19.14496 -18.82975 -17.88883 -17.27044 -16.76707 -16.53219 -16.48061 -15.97506 -15.67890 -15.54465 -15.02813 -14.73430 -14.34431 -14.12041 -13.93765 -13.60141 -13.40346 -13.17227 -13.07912 -12.79619 -12.55632 -12.40651 -12.14304 -11.61407 -11.12730 -10.99507 -10.86907 -10.57927 -10.41647 -10.29735 -10.15960 -9.95238 -9.70974 -9.61967 -9.48551 -9.01126 -8.56832 -8.55849 -8.51467 -6.08899 -4.11546 0.21807 0.65919 1.57034 1.94097 2.02450 3.09034 3.10060 3.29406 3.37148 3.39543 3.42536 3.74688 3.97853 4.21061 4.36317 4.42512 4.45323 4.67128 4.78244 4.92510 5.06665 5.16825 5.27003 5.36118 5.38067 5.50673 5.54459 5.66973 5.68676 5.75022 5.96945 5.99076 6.09034 6.16344 6.18889 6.31238 6.43844 6.64276 6.68952 6.89621 7.07387 7.09567 7.63378 7.71723 8.24843 8.53345 8.96881 9.53189 11.03059 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002862 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.305928 B = 9780.311403 C =10742.129408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.480 4.480 8 H 0.081 0.919 9 C -0.005 4.005 10 C 0.106 3.894 11 O -0.314 6.314 12 C 0.546 3.454 13 O -0.510 6.510 14 C 0.019 3.981 15 C -0.164 4.164 16 C -0.022 4.022 17 N -0.237 5.237 18 C 0.129 3.871 19 C -0.099 4.099 20 C -0.132 4.132 21 C 0.098 3.902 22 F -0.135 7.135 23 C -0.129 4.129 24 C -0.075 4.075 25 N -0.222 5.222 26 C -0.172 4.172 27 C -0.190 4.190 28 H 0.265 0.735 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.172 0.828 32 H 0.188 0.812 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.339 -17.259 13.069 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.185 1.185 7 C -0.517 4.517 8 H 0.099 0.901 9 C -0.006 4.006 10 C 0.033 3.967 11 O -0.227 6.227 12 C 0.388 3.612 13 O -0.397 6.397 14 C -0.140 4.140 15 C -0.190 4.190 16 C -0.160 4.160 17 N -0.020 5.020 18 C 0.038 3.962 19 C -0.119 4.119 20 C -0.151 4.151 21 C 0.078 3.922 22 F -0.113 7.113 23 C -0.148 4.148 24 C -0.095 4.095 25 N -0.056 5.056 26 C -0.209 4.209 27 C -0.228 4.228 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.189 0.811 32 H 0.205 0.795 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.176 0.824 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.647 -17.343 12.285 22.587 hybrid contribution 0.764 1.271 0.714 1.646 sum 8.412 -16.072 12.999 22.317 Atomic orbital electron populations 1.69883 1.06282 1.27067 1.50090 1.24993 0.94646 0.98937 0.94040 0.86918 0.80589 0.83626 0.78535 1.20192 1.21837 1.18459 1.20226 0.85911 0.94680 1.50905 0.90054 1.19307 0.95591 1.01066 0.84598 1.23151 0.97160 0.84570 0.91865 1.86688 1.69261 1.44347 1.22410 1.19547 0.75363 0.84788 0.81499 1.90822 1.41129 1.34813 1.72968 1.21098 1.04301 0.93163 0.95469 1.21828 1.05247 0.96598 0.95348 1.23008 1.00952 0.96359 0.95674 1.42821 1.36704 1.10976 1.11496 1.17669 0.99139 0.82403 0.97003 1.20660 1.00912 0.92800 0.97578 1.20932 0.99054 0.96896 0.98260 1.17795 0.97125 0.81505 0.95783 1.91533 1.82506 1.40509 1.96761 1.21150 1.01493 0.93259 0.98926 1.21010 0.94698 0.96145 0.97641 1.73877 1.18866 0.98808 1.14022 1.22819 1.01101 0.92460 1.04523 1.23010 1.01258 0.95578 1.02909 0.92538 0.91077 0.93370 0.81058 0.79457 0.83791 0.83474 0.83230 0.82404 0.90777 0.89142 0.88745 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.76 24.88 -169.99 -4.23 17.53 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.26 -6.15 5.74 56.52 0.32 -5.83 16 7 C -0.48 -13.58 9.35 -34.44 -0.32 -13.90 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 9 C 0.00 -0.11 1.06 -155.66 -0.16 -0.27 16 10 C 0.11 2.40 5.00 37.16 0.19 2.59 16 11 O -0.31 -7.05 10.16 -40.60 -0.41 -7.46 16 12 C 0.55 11.04 7.96 34.52 0.27 11.32 16 13 O -0.51 -10.81 16.64 -19.26 -0.32 -11.13 16 14 C 0.02 0.33 7.16 -82.77 -0.59 -0.26 16 15 C -0.16 -2.06 10.80 -39.35 -0.42 -2.48 16 16 C -0.02 -0.22 10.78 -16.80 -0.18 -0.40 16 17 N -0.24 -2.97 3.52 -10.55 -0.04 -3.01 16 18 C 0.13 1.33 6.66 -83.59 -0.56 0.77 16 19 C -0.10 -0.69 9.43 -39.41 -0.37 -1.06 16 20 C -0.13 -0.86 10.02 -39.54 -0.40 -1.26 16 21 C 0.10 0.80 7.30 -39.39 -0.29 0.51 16 22 F -0.13 -1.20 17.27 2.25 0.04 -1.16 16 23 C -0.13 -1.11 10.02 -39.54 -0.40 -1.51 16 24 C -0.08 -0.79 9.59 -39.41 -0.38 -1.17 16 25 N -0.22 -3.65 11.17 33.41 0.37 -3.28 16 26 C -0.17 -3.53 9.96 -26.69 -0.27 -3.79 16 27 C -0.19 -4.01 7.62 -26.69 -0.20 -4.21 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.07 1.71 6.47 -51.93 -0.34 1.37 16 30 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.19 0.93 6.96 -52.49 -0.37 0.56 16 33 H 0.14 0.58 6.64 -52.49 -0.35 0.23 16 34 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 35 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.16 1.86 7.64 -52.49 -0.40 1.46 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 39 H 0.09 2.05 7.29 -51.93 -0.38 1.68 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -34.01 353.78 -7.08 -41.09 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.42 Total: 1.77 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -4.18 Total: -13.04 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 1.11 Total: -32.93 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.73 Total: -18.59 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.23 Total: 17.53 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.01 -7.08 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096442772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.123 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds