Wall clock time and date at job start Tue Mar 31 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29023 * 124.91372 * 2 1 4 4 C 1.31784 * 117.12236 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74680 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46817 * 274.97458 * 5 4 3 7 7 C 1.38104 * 119.99537 * 180.02562 * 6 5 4 8 8 N 1.32864 * 120.81579 * 0.02562 * 7 6 5 9 9 C 1.32128 * 121.19145 * 179.97438 * 8 7 6 10 10 N 1.31505 * 122.64782 * 0.02562 * 9 8 7 11 11 C 1.33196 * 120.68322 * 0.02562 * 10 9 8 12 12 C 1.40816 * 120.80859 * 179.72382 * 7 6 5 13 13 C 1.41173 * 134.70152 * 0.67854 * 12 7 6 14 14 N 1.30252 * 108.47072 * 179.54595 * 13 12 7 15 15 N 1.36322 * 134.61456 * 180.02562 * 11 10 9 16 16 C 1.46501 * 125.87173 * 359.97438 * 15 11 10 17 17 C 1.50697 * 109.47368 * 90.00132 * 16 15 11 18 18 H 1.08004 * 119.99734 * 359.97438 * 17 16 15 19 19 C 1.37870 * 119.99949 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00310 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99820 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47264 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47227 * 120.00020 * 21 19 17 24 24 H 1.48497 * 109.47297 * 239.99866 * 21 19 17 25 25 C 1.33639 * 114.50230 * 0.02562 * 4 3 2 26 26 S 1.70979 * 124.91513 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47285 * 89.99792 * 1 2 3 28 28 H 1.09004 * 109.46739 * 209.99442 * 1 2 3 29 29 H 1.09000 * 109.47174 * 329.99386 * 1 2 3 30 30 H 1.08999 * 109.47368 * 34.97772 * 5 4 3 31 31 H 1.09001 * 109.46817 * 154.98029 * 5 4 3 32 32 H 0.97001 * 119.99777 * 0.02562 * 6 5 4 33 33 H 1.07998 * 118.67425 * 180.02562 * 9 8 7 34 34 H 1.07999 * 125.75977 * 359.32711 * 13 12 7 35 35 H 1.08997 * 109.46484 * 210.00003 * 16 15 11 36 36 H 1.08998 * 109.46896 * 329.99941 * 16 15 11 37 37 H 0.97003 * 119.99941 * 180.02562 * 20 19 17 38 38 H 1.07997 * 126.03698 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0012 6 7 4.7577 2.4739 -1.3747 7 6 5.6240 3.5197 -1.6256 8 7 6.2606 4.1296 -0.6315 9 6 7.0914 5.1305 -0.8631 10 7 7.3386 5.5819 -2.0733 11 6 6.7484 5.0368 -3.1357 12 6 5.8592 3.9615 -2.9418 13 6 5.3831 3.5839 -4.2160 14 7 5.9392 4.3523 -5.1087 15 7 6.7917 5.2677 -4.4785 16 6 7.5947 6.2942 -5.1476 17 6 8.9446 5.7250 -5.5008 18 1 9.1809 4.7010 -5.2514 19 6 9.8779 6.5113 -6.1424 20 7 9.5900 7.7579 -6.4465 21 14 11.5514 5.8058 -6.5795 22 1 11.6245 4.3915 -6.1329 23 1 11.7471 5.8707 -8.0502 24 1 12.6129 6.5943 -5.9037 25 6 3.9355 -0.4006 0.0004 26 16 2.4857 -1.4020 -0.0006 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 4.1267 2.8480 0.5902 31 1 5.4744 1.6954 0.4361 32 1 4.2994 2.0367 -2.1094 33 1 7.5875 5.5967 -0.0247 34 1 4.6796 2.7895 -4.4170 35 1 7.0873 6.6169 -6.0567 36 1 7.7231 7.1468 -4.4809 37 1 10.2465 8.3110 -6.8982 38 1 4.9546 -0.7580 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:49 Heat of formation + Delta-G solvation = 162.764944 kcal Electronic energy + Delta-G solvation = -24048.424607 eV Core-core repulsion = 20440.583037 eV Total energy + Delta-G solvation = -3607.841570 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.096 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36285 -40.35523 -38.41423 -36.29647 -33.80309 -33.11380 -31.90141 -31.25488 -29.92971 -28.70374 -27.38214 -26.60592 -23.92641 -23.51855 -22.97542 -22.07700 -20.20456 -20.03064 -18.41628 -17.69630 -17.33127 -16.65286 -16.38442 -15.78962 -15.39066 -15.14406 -14.98764 -14.50178 -14.14668 -14.11774 -13.86609 -13.69550 -13.36226 -13.30253 -12.90133 -12.85862 -12.58338 -12.13992 -11.80424 -11.62753 -11.17810 -10.98192 -10.93213 -10.75461 -10.27642 -10.07050 -10.04801 -9.83083 -9.79648 -9.26633 -9.23515 -8.64696 -8.58195 -8.19743 -7.61583 -6.20412 -4.26682 0.25388 0.91480 1.28299 1.33354 1.96563 2.17978 2.99830 3.08743 3.24366 3.29647 3.31354 3.38121 3.61420 4.32586 4.41391 4.42692 4.62062 4.74353 4.77287 4.85449 4.93693 4.99697 5.00531 5.14988 5.19462 5.31257 5.43395 5.54445 5.62170 5.74410 5.75913 6.32976 6.69576 6.90881 7.05383 7.12770 7.24881 7.34164 7.51853 7.73784 7.92145 7.94263 8.25225 8.73928 8.85020 9.38256 10.87868 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.002305 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.535313 B =12142.937254 C =12269.235106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.048 3.952 3 N -0.461 5.461 4 C 0.050 3.950 5 C 0.210 3.790 6 N -0.702 5.702 7 C 0.511 3.489 8 N -0.619 5.619 9 C 0.367 3.633 10 N -0.554 5.554 11 C 0.364 3.636 12 C -0.336 4.336 13 C 0.069 3.931 14 N -0.243 5.243 15 N -0.332 5.332 16 C 0.263 3.737 17 C -0.532 4.532 18 H 0.062 0.938 19 C 0.066 3.934 20 N -0.891 5.891 21 Si 0.907 3.093 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.280 1.280 25 C -0.237 4.237 26 S 0.122 5.878 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.410 0.590 33 H 0.196 0.804 34 H 0.181 0.819 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.267 0.733 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.766 -18.214 15.337 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.230 4.230 3 N -0.176 5.176 4 C -0.082 4.082 5 C 0.084 3.916 6 N -0.335 5.335 7 C 0.259 3.741 8 N -0.350 5.350 9 C 0.074 3.926 10 N -0.279 5.279 11 C 0.116 3.884 12 C -0.354 4.354 13 C -0.126 4.126 14 N -0.059 5.059 15 N -0.119 5.119 16 C 0.146 3.854 17 C -0.570 4.570 18 H 0.080 0.920 19 C -0.138 4.138 20 N -0.529 5.529 21 Si 0.734 3.266 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.377 4.377 26 S 0.377 5.623 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.246 0.754 33 H 0.212 0.788 34 H 0.198 0.802 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -16.500 -17.747 14.677 28.330 hybrid contribution 1.026 -0.370 -0.428 1.172 sum -15.474 -18.117 14.249 27.762 Atomic orbital electron populations 1.20472 0.84965 1.04339 1.04129 1.27112 1.01947 0.90844 1.03119 1.66130 1.04347 1.31564 1.15592 1.20316 0.90222 0.94143 1.03543 1.19655 0.95235 0.92696 0.84020 1.44199 1.46612 1.34476 1.08228 1.17845 0.84831 0.84578 0.86862 1.67937 1.17420 1.16174 1.33441 1.24411 0.88648 0.87204 0.92375 1.67515 1.29016 1.33806 0.97543 1.18935 0.91283 0.90640 0.87564 1.19595 1.13087 1.08294 0.94444 1.23353 1.00443 1.00064 0.88772 1.76937 1.05228 1.02043 1.21694 1.49458 1.34129 1.27621 1.00643 1.19800 0.88787 0.83176 0.93606 1.21283 0.97553 0.98926 1.39281 0.92016 1.24902 0.99046 0.94716 0.95088 1.69930 1.35659 1.06750 1.40576 0.86286 0.82937 0.79219 0.78115 1.19722 1.20667 1.20576 1.27001 1.03623 0.95794 1.11324 1.84067 0.97660 1.12681 1.67893 0.89378 0.90037 0.89080 0.89589 0.89618 0.75407 0.78794 0.80211 0.92806 0.92220 0.92328 0.80136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.46 36.01 0.38 0.01 16 2 C 0.05 0.37 7.39 -13.45 -0.10 0.27 16 3 N -0.46 -4.69 10.53 -8.05 -0.08 -4.78 16 4 C 0.05 0.47 6.11 -84.22 -0.51 -0.04 16 5 C 0.21 2.17 6.17 -5.19 -0.03 2.14 16 6 N -0.70 -8.42 5.67 -61.25 -0.35 -8.76 16 7 C 0.51 8.12 7.55 -154.85 -1.17 6.95 16 8 N -0.62 -9.97 9.69 -13.62 -0.13 -10.10 16 9 C 0.37 6.24 12.24 -92.11 -1.13 5.11 16 10 N -0.55 -11.83 10.47 -13.96 -0.15 -11.98 16 11 C 0.36 8.17 8.04 -156.22 -1.26 6.91 16 12 C -0.34 -6.27 6.14 -106.81 -0.66 -6.93 16 13 C 0.07 1.20 11.87 -17.11 -0.20 1.00 16 14 N -0.24 -5.32 12.45 30.80 0.38 -4.93 16 15 N -0.33 -8.09 3.63 -61.64 -0.22 -8.31 16 16 C 0.26 7.12 6.19 -5.19 -0.03 7.08 16 17 C -0.53 -15.34 9.39 -34.44 -0.32 -15.66 16 18 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 19 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 20 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 21 Si 0.91 21.88 29.54 -169.99 -5.02 16.85 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.24 -1.80 11.11 29.12 0.32 -1.48 16 26 S 0.12 0.78 23.18 -107.50 -2.49 -1.71 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.41 4.35 8.33 -40.82 -0.34 4.01 16 33 H 0.20 2.48 8.06 -52.49 -0.42 2.06 16 34 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.05 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.06 1.69 8.14 -51.93 -0.42 1.26 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -34.31 353.48 -10.92 -45.23 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.11 Total: 1.28 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -4.81 Total: 7.14 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: 0.19 Total: -74.12 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.49 Total: -1.71 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.31 -10.92 -45.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.995 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds