Wall clock time and date at job start Tue Mar 31 2020 05:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99884 * 2 1 4 4 H 1.48496 * 109.47846 * 270.00538 * 3 2 1 5 5 H 1.48509 * 109.47331 * 30.00682 * 3 2 1 6 6 H 1.48500 * 109.47176 * 150.00156 * 3 2 1 7 7 C 1.37871 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00346 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99960 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47199 * 180.02562 * 9 7 2 11 11 C 1.46494 * 120.00460 * 85.00192 * 10 9 7 12 12 C 1.50701 * 109.47175 * 82.93425 * 11 10 9 13 13 C 1.34507 * 125.78841 * 86.09471 * 12 11 10 14 14 C 1.41379 * 106.84083 * 180.02562 * 13 12 11 15 15 C 1.34518 * 106.84310 * 359.97438 * 14 13 12 16 16 O 1.34306 * 108.41891 * 359.97438 * 15 14 13 17 17 S 1.65604 * 119.99653 * 265.00153 * 10 9 7 18 18 O 1.42103 * 106.40242 * 209.12724 * 17 10 9 19 19 O 1.42096 * 106.40500 * 342.04836 * 17 10 9 20 20 N 1.65601 * 107.21693 * 95.58900 * 17 10 9 21 21 C 1.47155 * 120.98293 * 263.80041 * 20 17 10 22 22 C 1.53710 * 108.15830 * 129.43109 * 21 20 17 23 23 O 1.42966 * 109.14824 * 52.54536 * 22 21 20 24 24 C 1.42971 * 114.16222 * 297.28388 * 23 22 21 25 25 C 1.47159 * 120.98222 * 84.08648 * 20 17 10 26 26 H 0.97002 * 119.99899 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47255 * 60.00529 * 9 7 2 28 28 H 1.08999 * 109.47439 * 300.00733 * 9 7 2 29 29 H 1.09009 * 109.47040 * 322.93755 * 11 10 9 30 30 H 1.08996 * 109.47500 * 202.93652 * 11 10 9 31 31 H 1.07996 * 126.58281 * 0.05335 * 13 12 11 32 32 H 1.08002 * 126.58183 * 179.97438 * 14 13 12 33 33 H 1.08000 * 125.79114 * 180.27015 * 15 14 13 34 34 H 1.08997 * 109.68399 * 249.21459 * 21 20 17 35 35 H 1.09000 * 109.67769 * 9.77299 * 21 20 17 36 36 H 1.08999 * 109.66525 * 292.57496 * 22 21 20 37 37 H 1.09003 * 109.48473 * 172.40190 * 22 21 20 38 38 H 1.09002 * 109.51261 * 302.65647 * 24 23 22 39 39 H 1.09000 * 109.54973 * 182.52897 * 24 23 22 40 40 H 1.08997 * 109.67829 * 350.23875 * 25 20 17 41 41 H 1.08999 * 109.68145 * 110.74983 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7631 -4.0976 1.2633 12 6 1.7949 -5.0567 1.9065 13 6 1.7133 -6.3763 1.6590 14 6 0.6756 -6.8827 2.4748 15 6 0.1854 -5.8423 3.1725 16 8 0.8678 -4.7390 2.8249 17 16 2.6461 -4.3231 -1.4293 18 8 2.9606 -5.6750 -1.1246 19 8 1.6626 -3.9504 -2.3848 20 7 4.0611 -3.6114 -1.9126 21 6 4.0591 -2.4997 -2.8768 22 6 4.9033 -1.3563 -2.2914 23 8 6.1845 -1.8656 -1.9131 24 6 6.1394 -2.8594 -0.8863 25 6 5.3580 -4.0760 -1.3954 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8896 29 1 2.9367 -3.2539 1.9313 30 1 3.7065 -4.6084 1.0704 31 1 2.3237 -6.9408 0.9698 32 1 0.3406 -7.9081 2.5277 33 1 -0.6172 -5.8874 3.8937 34 1 4.4903 -2.8319 -3.8211 35 1 3.0373 -2.1568 -3.0396 36 1 4.4032 -0.9422 -1.4159 37 1 5.0289 -0.5760 -3.0420 38 1 5.6437 -2.4508 -0.0057 39 1 7.1539 -3.1612 -0.6259 40 1 5.1968 -4.7775 -0.5770 41 1 5.9175 -4.5648 -2.1930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097258793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:55 Heat of formation + Delta-G solvation = -91.688778 kcal Electronic energy + Delta-G solvation = -28440.179861 eV Core-core repulsion = 24449.409928 eV Total energy + Delta-G solvation = -3990.769933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.15649 -38.93840 -36.84458 -35.97355 -35.33718 -34.52351 -32.86103 -32.46476 -31.17462 -30.06474 -27.21599 -26.76689 -25.04248 -24.01054 -22.59653 -21.35746 -21.07451 -20.20015 -18.62688 -17.78399 -17.06876 -16.92304 -16.36518 -16.17273 -15.84264 -15.44809 -15.12594 -14.92490 -14.72720 -14.40736 -14.26530 -13.92449 -13.53537 -13.03031 -12.59754 -12.45868 -12.38594 -12.34136 -12.06360 -11.84276 -11.81548 -11.64500 -11.35430 -11.25457 -11.20253 -11.15468 -10.94268 -10.63036 -10.43435 -10.21400 -10.01352 -9.79525 -9.56259 -8.63267 -8.54193 -8.33861 -8.11375 -6.17066 -4.24541 1.03929 2.07468 2.92713 3.19515 3.26864 3.28210 3.33357 3.36459 4.00985 4.01267 4.29781 4.71445 4.88610 4.98713 5.04622 5.14271 5.18191 5.27515 5.35216 5.37888 5.47683 5.51071 5.56103 5.74498 5.81807 5.85543 5.92824 6.11459 6.15159 6.21475 6.31644 6.36975 6.43816 6.68112 6.87483 7.25084 7.29537 7.33397 7.50907 7.53671 7.78452 8.07252 8.79130 9.41356 10.91121 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.010113 B = 0.006889 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.929152 B = 4063.371700 C = 5745.131967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.245 3.755 10 N -0.986 5.986 11 C 0.211 3.789 12 C -0.021 4.021 13 C -0.202 4.202 14 C -0.221 4.221 15 C -0.046 4.046 16 O -0.166 6.166 17 S 2.784 3.216 18 O -0.991 6.991 19 O -0.969 6.969 20 N -1.007 6.007 21 C 0.095 3.905 22 C 0.042 3.958 23 O -0.383 6.383 24 C 0.047 3.953 25 C 0.092 3.908 26 H 0.265 0.735 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.198 0.802 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.600 -8.072 1.615 11.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.123 3.877 10 N -0.825 5.825 11 C 0.084 3.916 12 C -0.073 4.073 13 C -0.222 4.222 14 C -0.240 4.240 15 C -0.115 4.115 16 O -0.061 6.061 17 S 2.794 3.206 18 O -0.975 6.975 19 O -0.953 6.953 20 N -0.847 5.847 21 C -0.030 4.030 22 C -0.036 4.036 23 O -0.302 6.302 24 C -0.031 4.031 25 C -0.035 4.035 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.173 0.827 32 H 0.161 0.839 33 H 0.214 0.786 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.069 -8.257 1.155 11.602 hybrid contribution 0.146 0.904 0.355 0.982 sum 8.215 -7.353 1.510 11.128 Atomic orbital electron populations 1.69935 1.06036 1.27196 1.49130 1.24931 0.94781 0.99098 0.94843 0.86656 0.79894 0.83454 0.78411 1.20288 1.21081 1.19725 1.21488 0.93354 0.90580 1.52651 0.91849 1.19266 0.87214 0.81487 0.99726 1.57950 1.57503 1.48787 1.18302 1.19381 0.90713 0.95175 0.86338 1.23124 0.94657 0.95422 0.94109 1.21835 1.02217 0.94399 1.03773 1.21809 1.00655 1.00148 1.01407 1.23991 0.99924 0.84075 1.03486 1.84086 1.39229 1.35476 1.47282 1.01920 0.72477 0.72936 0.73297 1.93535 1.85043 1.33585 1.85303 1.93580 1.57462 1.84006 1.60296 1.58333 1.21091 1.48479 1.56771 1.22077 1.03127 0.86751 0.91077 1.23183 0.84016 0.95165 1.01244 1.87881 1.29014 1.56611 1.56645 1.22920 1.00751 0.88598 0.90829 1.21980 0.84990 0.96801 0.99680 0.92512 0.92992 0.94137 0.88290 0.88900 0.82719 0.83896 0.78573 0.91282 0.87502 0.90518 0.88313 0.92134 0.88371 0.89309 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.69 13.29 55.43 0.74 -23.96 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.54 -13.37 9.38 -34.44 -0.32 -13.69 16 8 H 0.06 1.47 6.12 -52.49 -0.32 1.15 16 9 C 0.24 5.90 5.40 -5.19 -0.03 5.88 16 10 N -0.99 -19.54 2.81 -116.95 -0.33 -19.86 16 11 C 0.21 3.56 5.90 -5.20 -0.03 3.53 16 12 C -0.02 -0.36 6.88 -35.63 -0.25 -0.61 16 13 C -0.20 -3.38 10.51 -39.71 -0.42 -3.80 16 14 C -0.22 -3.25 10.91 -39.70 -0.43 -3.68 16 15 C -0.05 -0.67 12.09 29.42 0.36 -0.32 16 16 O -0.17 -2.98 10.65 5.69 0.06 -2.92 16 17 S 2.78 53.57 6.03 -107.50 -0.65 52.93 16 18 O -0.99 -18.94 15.24 -57.17 -0.87 -19.81 16 19 O -0.97 -22.13 15.22 -57.17 -0.87 -23.00 16 20 N -1.01 -16.23 3.39 -112.82 -0.38 -16.61 16 21 C 0.10 1.50 6.63 -3.32 -0.02 1.48 16 22 C 0.04 0.63 7.00 37.53 0.26 0.90 16 23 O -0.38 -5.65 10.74 -35.23 -0.38 -6.02 16 24 C 0.05 0.59 6.98 37.31 0.26 0.85 16 25 C 0.09 1.18 6.55 -3.53 -0.02 1.15 16 26 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.05 1.40 6.88 -51.93 -0.36 1.04 16 28 H 0.04 1.06 8.11 -51.93 -0.42 0.63 16 29 H 0.10 1.64 8.12 -51.92 -0.42 1.22 16 30 H 0.09 1.27 7.04 -51.93 -0.37 0.90 16 31 H 0.16 2.55 7.31 -52.49 -0.38 2.17 16 32 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.11 1.87 7.08 -51.93 -0.37 1.51 16 36 H 0.08 1.33 6.45 -51.93 -0.33 0.99 16 37 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.02 6.77 -51.93 -0.35 0.67 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -31.96 350.94 -8.58 -40.54 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.42 Total: 5.27 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -0.74 Total: -6.67 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.02 Total: -60.43 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -2.06 Total: -51.75 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 53.57 SS G_CDS: -0.65 Total: 52.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.96 -8.58 -40.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097258793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.150 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds