Wall clock time and date at job start Tue Mar 31 2020 04:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37105 * 120.00565 * 2 1 4 4 H 1.07995 * 120.00309 * 202.41107 * 3 2 1 5 5 C 1.38949 * 119.99308 * 22.40055 * 3 2 1 6 6 N 1.31411 * 120.00473 * 11.60311 * 5 3 2 7 7 Si 1.86801 * 119.99807 * 191.59876 * 5 3 2 8 8 H 1.48501 * 109.47289 * 59.99946 * 7 5 3 9 9 H 1.48500 * 109.47297 * 180.02562 * 7 5 3 10 10 H 1.48510 * 109.47068 * 300.00374 * 7 5 3 11 11 C 1.34778 * 120.00176 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00383 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99741 * 0.02562 * 11 2 1 14 14 C 1.53000 * 109.47193 * 179.97438 * 13 11 2 15 15 N 1.46498 * 109.47180 * 179.97438 * 14 13 11 16 16 S 1.65596 * 120.00123 * 164.99876 * 15 14 13 17 17 O 1.42101 * 106.40347 * 178.54016 * 16 15 14 18 18 O 1.42092 * 106.40277 * 311.46368 * 16 15 14 19 19 C 1.76202 * 107.21721 * 65.00439 * 16 15 14 20 20 C 1.38218 * 120.01777 * 115.00131 * 19 16 15 21 21 C 1.38222 * 120.03083 * 179.97438 * 20 19 16 22 22 C 1.38271 * 120.04601 * 0.02562 * 21 20 19 23 23 C 1.38172 * 120.02783 * 0.02562 * 22 21 20 24 24 C 1.38445 * 120.01152 * 294.72318 * 19 16 15 25 25 F 1.35094 * 120.02361 * 359.97438 * 24 19 16 26 26 H 1.09002 * 109.47153 * 272.16510 * 1 2 3 27 27 H 1.09001 * 109.47170 * 32.15711 * 1 2 3 28 28 H 1.08998 * 109.47304 * 152.16121 * 1 2 3 29 29 H 0.96996 * 120.00166 * 179.97438 * 6 5 3 30 30 H 1.08999 * 109.47381 * 59.99211 * 13 11 2 31 31 H 1.09004 * 109.47065 * 299.99898 * 13 11 2 32 32 H 1.09007 * 109.46783 * 59.99956 * 14 13 11 33 33 H 1.08994 * 109.47201 * 299.99642 * 14 13 11 34 34 H 0.97002 * 120.00196 * 344.72836 * 15 14 13 35 35 H 1.07998 * 119.98108 * 359.97438 * 20 19 16 36 36 H 1.07994 * 119.97807 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.98639 * 179.97438 * 22 21 20 38 38 H 1.08006 * 120.01246 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1694 1.2226 -0.3566 5 6 1.5345 2.3452 0.4586 6 7 0.3896 2.2708 1.0995 7 14 2.3336 4.0078 0.1642 8 1 2.4816 4.2343 -1.2959 9 1 1.4831 5.0761 0.7477 10 1 3.6720 4.0345 0.8074 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3853 -2.4723 0.0005 14 6 2.3795 -3.6352 0.0005 15 7 1.6470 -4.9039 0.0011 16 16 2.4325 -6.3138 -0.3699 17 8 1.4706 -7.3528 -0.2493 18 8 3.1618 -6.0645 -1.5636 19 6 3.6277 -6.5932 0.8942 20 6 3.5077 -7.6878 1.7296 21 6 4.4454 -7.9076 2.7210 22 6 5.5042 -7.0324 2.8787 23 6 5.6258 -5.9369 2.0455 24 6 4.6907 -5.7195 1.0475 25 9 4.8124 -4.6526 0.2278 26 1 -0.3633 0.0388 1.0269 27 1 -0.3633 0.8700 -0.5470 28 1 -0.3634 -0.9087 -0.4799 29 1 -0.0403 3.0791 1.4199 30 1 0.7589 -2.5302 -0.8896 31 1 0.7583 -2.5298 0.8903 32 1 3.0062 -3.5775 0.8906 33 1 3.0061 -3.5776 -0.8894 34 1 0.7028 -4.9187 0.2227 35 1 2.6808 -8.3717 1.6075 36 1 4.3510 -8.7633 3.3729 37 1 6.2361 -7.2048 3.6539 38 1 6.4527 -5.2532 2.1692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101515744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:54 Heat of formation + Delta-G solvation = -112.351790 kcal Electronic energy + Delta-G solvation = -26176.519766 eV Core-core repulsion = 22061.393513 eV Total energy + Delta-G solvation = -4115.126254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.32450 -39.22403 -38.59772 -37.28256 -35.94452 -35.61951 -34.55003 -31.78146 -31.68804 -30.86717 -29.79503 -26.29659 -24.73469 -23.90249 -23.13882 -22.82133 -19.81264 -19.01635 -18.47562 -17.54393 -17.11387 -16.90574 -16.76305 -16.41652 -15.96962 -15.42015 -15.34340 -15.02749 -14.62366 -14.49108 -14.15989 -14.02184 -13.65268 -13.43415 -12.96173 -12.79391 -12.61971 -12.20853 -12.11986 -11.99763 -11.95851 -11.82285 -11.50996 -11.34280 -11.17229 -11.06869 -10.94828 -10.82617 -10.40744 -10.23324 -9.88846 -9.46028 -9.17626 -9.02877 -8.42520 -7.69742 -6.32271 -3.88809 0.17254 0.43192 0.78433 2.79599 3.08656 3.18489 3.24044 3.28412 3.54166 3.77370 3.87260 4.10420 4.15382 4.42536 4.53601 4.76980 4.86734 4.95297 5.06598 5.11214 5.22249 5.44876 5.48126 5.59379 5.66313 5.67147 5.76691 5.87554 5.99849 6.21022 6.38042 6.38983 6.40464 6.86650 6.93939 7.20847 7.55880 8.11490 8.47037 9.17434 9.41389 9.96164 10.71342 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.003088 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.035572 B = 9064.868328 C = 9769.365322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.446 5.446 3 C -0.307 4.307 4 H 0.099 0.901 5 C 0.030 3.970 6 N -0.884 5.884 7 Si 0.928 3.072 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.447 3.553 12 O -0.588 6.588 13 C -0.137 4.137 14 C 0.132 3.868 15 N -1.114 6.114 16 S 2.701 3.299 17 O -0.960 6.960 18 O -0.944 6.944 19 C -0.718 4.718 20 C 0.004 3.996 21 C -0.155 4.155 22 C -0.038 4.038 23 C -0.173 4.173 24 C 0.199 3.801 25 F -0.108 7.108 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.268 0.732 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.419 0.581 35 H 0.152 0.848 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -18.794 4.237 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.164 5.164 3 C -0.435 4.435 4 H 0.117 0.883 5 C -0.173 4.173 6 N -0.524 5.524 7 Si 0.754 3.246 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.234 3.766 12 O -0.473 6.473 13 C -0.179 4.179 14 C 0.006 3.994 15 N -0.875 5.875 16 S 2.787 3.213 17 O -0.950 6.950 18 O -0.934 6.934 19 C -0.803 4.803 20 C -0.015 4.015 21 C -0.174 4.174 22 C -0.056 4.056 23 C -0.192 4.192 24 C 0.178 3.822 25 F -0.086 7.086 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.254 0.746 35 H 0.170 0.830 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.171 -19.096 3.532 19.677 hybrid contribution 0.128 1.337 0.729 1.528 sum 3.299 -17.759 4.261 18.558 Atomic orbital electron populations 1.21526 0.81114 0.98900 1.01722 1.43581 1.05550 1.04759 1.62539 1.19638 0.99530 0.83830 1.40452 0.88328 1.25339 0.96499 1.00079 0.95361 1.69985 1.17377 1.29386 1.35649 0.85979 0.78996 0.80814 0.78785 1.19895 1.20981 1.19797 1.19814 0.88010 0.84594 0.84196 1.90538 1.13787 1.87101 1.55894 1.21685 0.98864 0.93715 1.03608 1.21281 0.93864 0.80529 1.03718 1.55480 1.21650 1.22119 1.88292 1.01765 0.73339 0.72321 0.73847 1.93573 1.59725 1.54797 1.86946 1.93637 1.73347 1.84646 1.41761 1.31102 1.17743 1.06607 1.24866 1.20883 0.97477 0.92834 0.90313 1.21353 0.95514 1.00979 0.99578 1.21365 0.96367 0.91744 0.96145 1.21353 1.00668 1.00711 0.96503 1.17191 0.93508 0.83012 0.88465 1.91727 1.95175 1.52046 1.69646 0.92375 0.91264 0.95424 0.92225 0.89563 0.89649 0.91087 0.88999 0.74647 0.83024 0.84346 0.84185 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.41 8.52 59.84 0.51 2.92 16 2 N -0.45 -11.25 3.02 -122.20 -0.37 -11.62 16 3 C -0.31 -8.50 9.29 -14.93 -0.14 -8.64 16 4 H 0.10 2.86 7.41 -52.49 -0.39 2.47 16 5 C 0.03 0.79 5.11 -17.47 -0.09 0.70 16 6 N -0.88 -23.29 10.62 55.50 0.59 -22.71 16 7 Si 0.93 20.68 29.57 -169.99 -5.03 15.65 16 8 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 C 0.45 10.60 7.63 -10.98 -0.08 10.51 16 12 O -0.59 -15.88 15.67 5.55 0.09 -15.80 16 13 C -0.14 -2.36 4.36 -27.88 -0.12 -2.48 16 14 C 0.13 2.13 3.86 -4.04 -0.02 2.11 16 15 N -1.11 -14.08 6.00 -10.61 -0.06 -14.14 16 16 S 2.70 36.09 5.48 -107.50 -0.59 35.50 16 17 O -0.96 -13.35 16.97 -57.17 -0.97 -14.32 16 18 O -0.94 -15.91 16.88 -57.17 -0.97 -16.88 16 19 C -0.72 -8.75 5.89 -39.51 -0.23 -8.99 16 20 C 0.00 0.04 9.55 -39.59 -0.38 -0.34 16 21 C -0.16 -1.19 10.05 -39.58 -0.40 -1.59 16 22 C -0.04 -0.29 10.04 -39.59 -0.40 -0.69 16 23 C -0.17 -1.78 10.03 -39.52 -0.40 -2.18 16 24 C 0.20 2.61 6.80 -39.42 -0.27 2.34 16 25 F -0.11 -1.70 12.97 2.25 0.03 -1.67 16 26 H 0.06 1.30 7.54 -51.93 -0.39 0.91 16 27 H 0.07 1.59 7.06 -51.93 -0.37 1.23 16 28 H 0.03 0.48 6.36 -51.93 -0.33 0.15 16 29 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.09 1.32 7.41 -51.93 -0.38 0.93 16 31 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 32 H 0.07 1.18 6.73 -51.92 -0.35 0.83 16 33 H 0.09 1.65 7.21 -51.93 -0.37 1.27 16 34 H 0.42 4.14 8.66 -34.46 -0.30 3.84 16 35 H 0.15 1.21 7.33 -52.49 -0.38 0.82 16 36 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 335.91 15.07 5.06 5.06 Total: -1.00 -35.07 335.91 -8.32 -43.39 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.09 Total: 3.84 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.01 Total: -6.31 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.16 Total: -48.47 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -1.85 Total: -47.00 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.03 Total: -1.67 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Atomic # 16 Polarization: 36.09 SS G_CDS: -0.59 Total: 35.50 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.07 -8.32 -43.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.960 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds