Wall clock time and date at job start Tue Mar 31 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36712 * 126.60955 * 2 1 4 4 C 1.47423 * 125.77272 * 359.96554 * 3 2 1 5 5 O 1.21625 * 120.00162 * 359.72140 * 4 3 2 6 6 N 1.34778 * 119.99790 * 179.44059 * 4 3 2 7 7 C 1.36948 * 120.00358 * 180.28096 * 6 4 3 8 8 H 1.08007 * 119.99729 * 359.97438 * 7 6 4 9 9 C 1.38987 * 120.00472 * 180.02562 * 7 6 4 10 10 N 1.31404 * 119.99662 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00204 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47463 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47431 * 119.99586 * 11 9 7 14 14 H 1.48508 * 109.47296 * 239.99670 * 11 9 7 15 15 N 1.34420 * 108.44829 * 179.70545 * 3 2 1 16 16 N 1.28752 * 109.58112 * 0.26357 * 15 3 2 17 17 N 1.35073 * 126.60704 * 180.15161 * 2 1 3 18 18 C 1.40294 * 126.61313 * 0.02562 * 17 2 1 19 19 C 1.38832 * 120.01245 * 42.00441 * 18 17 2 20 20 C 1.38096 * 120.04129 * 180.02562 * 19 18 17 21 21 C 1.38739 * 120.15998 * 359.96728 * 20 19 18 22 22 C 1.39018 * 119.92139 * 359.95320 * 21 20 19 23 23 C 1.38619 * 119.88128 * 359.83298 * 22 21 20 24 24 O 1.36117 * 120.77806 * 180.20745 * 22 21 20 25 25 C 1.43174 * 116.70887 * 342.71254 * 24 22 21 26 26 C 1.53470 * 108.22943 * 46.26716 * 25 24 22 27 27 O 1.36158 * 119.32469 * 179.80453 * 21 20 19 28 28 H 1.08994 * 109.46926 * 84.61846 * 1 2 3 29 29 H 1.08997 * 109.46586 * 204.62518 * 1 2 3 30 30 H 1.08999 * 109.46931 * 324.61678 * 1 2 3 31 31 H 0.97002 * 119.99610 * 0.27360 * 6 4 3 32 32 H 0.97000 * 119.99758 * 179.97438 * 10 9 7 33 33 H 1.08004 * 119.97439 * 0.02738 * 19 18 17 34 34 H 1.08001 * 119.91844 * 179.97438 * 20 19 18 35 35 H 1.08006 * 119.98597 * 180.18021 * 23 22 21 36 36 H 1.08997 * 109.71166 * 286.58685 * 25 24 22 37 37 H 1.08998 * 109.74842 * 165.97003 * 25 24 22 38 38 H 1.08995 * 109.71059 * 180.54087 * 26 25 24 39 39 H 1.09011 * 109.74159 * 59.94127 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3224 1.0974 0.0000 4 6 1.8762 2.5025 -0.0007 5 8 0.6882 2.7633 -0.0065 6 7 2.7847 3.4980 0.0108 7 6 2.3702 4.8033 0.0159 8 1 1.3153 5.0349 0.0104 9 6 3.3071 5.8299 0.0272 10 7 4.5905 5.5480 0.0335 11 14 2.7418 7.6102 0.0335 12 1 1.2575 7.6584 0.0241 13 1 3.2517 8.2873 1.2529 14 1 3.2666 8.3006 -1.1721 15 7 3.5996 0.6784 0.0066 16 7 3.6315 -0.6087 0.0051 17 7 2.3126 -1.0843 -0.0029 18 6 1.9075 -2.4275 -0.0069 19 6 0.8521 -2.8321 -0.8130 20 6 0.4525 -4.1540 -0.8170 21 6 1.1041 -5.0816 -0.0171 22 6 2.1624 -4.6795 0.7898 23 6 2.5657 -3.3533 0.7899 24 8 2.8167 -5.5757 1.5782 25 6 2.1505 -6.8176 1.8305 26 6 1.6046 -7.3488 0.4982 27 8 0.6936 -6.3797 -0.0314 28 1 -0.3633 0.0964 -1.0231 29 1 -0.3632 -0.9342 0.4282 30 1 -0.3633 0.8379 0.5951 31 1 3.7321 3.2899 0.0155 32 1 5.2444 6.2645 0.0410 33 1 0.3432 -2.1125 -1.4372 34 1 -0.3690 -4.4665 -1.4445 35 1 3.3895 -3.0397 1.4139 36 1 1.3278 -6.6585 2.5276 37 1 2.8552 -7.5348 2.2511 38 1 1.0830 -8.2914 0.6643 39 1 2.4262 -7.5018 -0.2016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109122082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:31 Heat of formation + Delta-G solvation = 21.378552 kcal Electronic energy + Delta-G solvation = -26986.026723 eV Core-core repulsion = 22897.008557 eV Total energy + Delta-G solvation = -4089.018166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.10064 -41.56416 -38.48786 -37.74544 -37.70188 -34.39798 -33.97896 -32.11691 -31.45154 -31.25433 -30.33449 -28.50051 -27.62284 -25.36086 -24.97898 -23.89793 -22.34784 -22.24236 -20.51846 -19.50153 -19.01642 -18.16940 -17.92754 -17.64304 -16.85501 -15.92749 -15.79971 -15.43525 -15.29370 -14.85867 -14.73199 -14.41736 -14.29847 -14.09897 -13.92987 -13.67755 -13.48232 -13.07958 -12.90417 -12.78948 -12.49106 -12.22894 -11.87670 -11.60832 -11.57238 -11.47090 -11.12819 -11.02441 -10.73741 -10.34927 -10.31033 -10.23791 -9.57896 -9.05574 -8.71264 -8.58207 -8.29508 -8.00505 -6.46960 -3.83229 0.47170 0.81593 1.64819 2.11848 2.39696 2.50700 2.80607 3.19896 3.20693 3.26342 3.33494 3.70039 4.13146 4.13583 4.30798 4.31509 4.39603 4.50711 4.60296 4.65874 4.76695 4.87781 4.91288 4.96759 5.06399 5.21969 5.33699 5.42291 5.46467 5.63777 5.69607 5.72881 5.87955 5.98175 6.09083 6.27307 6.38758 6.64303 6.84679 6.96576 7.50107 7.99861 8.34641 8.59699 9.10461 9.51227 10.01926 10.69391 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.036130 B = 0.002319 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.785364 B =12069.849406 C =12585.597676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.101 3.899 3 C -0.056 4.056 4 C 0.506 3.494 5 O -0.595 6.595 6 N -0.529 5.529 7 C -0.298 4.298 8 H 0.110 0.890 9 C 0.024 3.976 10 N -0.883 5.883 11 Si 0.935 3.065 12 H -0.266 1.266 13 H -0.280 1.280 14 H -0.280 1.280 15 N -0.201 5.201 16 N -0.075 5.075 17 N -0.327 5.327 18 C 0.151 3.849 19 C -0.110 4.110 20 C -0.093 4.093 21 C 0.054 3.946 22 C 0.067 3.933 23 C -0.096 4.096 24 O -0.302 6.302 25 C 0.020 3.980 26 C 0.019 3.981 27 O -0.304 6.304 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.402 0.598 32 H 0.275 0.725 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.841 -26.611 1.060 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.033 4.033 3 C -0.195 4.195 4 C 0.290 3.710 5 O -0.481 6.481 6 N -0.162 5.162 7 C -0.428 4.428 8 H 0.127 0.873 9 C -0.180 4.180 10 N -0.523 5.523 11 Si 0.761 3.239 12 H -0.190 1.190 13 H -0.206 1.206 14 H -0.206 1.206 15 N -0.074 5.074 16 N -0.052 5.052 17 N -0.110 5.110 18 C 0.059 3.941 19 C -0.131 4.131 20 C -0.113 4.113 21 C 0.008 3.992 22 C 0.022 3.978 23 C -0.117 4.117 24 O -0.216 6.216 25 C -0.056 4.056 26 C -0.056 4.056 27 O -0.218 6.218 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.237 0.763 32 H 0.085 0.915 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.166 0.834 36 H 0.098 0.902 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.901 -26.668 1.093 27.335 hybrid contribution -0.310 0.581 0.092 0.665 sum -6.211 -26.087 1.185 26.842 Atomic orbital electron populations 1.20659 0.84896 1.04267 1.04662 1.21885 0.96063 0.85401 0.99926 1.21854 0.87707 0.96820 1.13083 1.16241 0.86244 0.81514 0.86957 1.90582 1.15783 1.82683 1.59040 1.41778 1.09036 1.05235 1.60165 1.19870 0.95072 0.80525 1.47363 0.87262 1.25422 0.94827 1.00964 0.96752 1.69665 1.00401 1.34258 1.47941 0.85726 0.79190 0.81151 0.77830 1.18968 1.20576 1.20578 1.74662 1.19834 1.03204 1.09724 1.82046 0.94905 1.04056 1.24222 1.47375 1.07309 1.04007 1.52284 1.16958 0.97452 0.80553 0.99181 1.20933 0.97248 0.96070 0.98856 1.20239 1.01515 0.90612 0.98896 1.18947 0.97177 0.85038 0.97989 1.18463 0.95311 0.89869 0.94191 1.20146 1.02220 0.88946 1.00352 1.86353 1.43712 1.26177 1.65384 1.23691 0.99551 0.85168 0.97151 1.23683 0.94715 0.91955 0.95267 1.86333 1.42649 1.13215 1.79609 0.89354 0.91425 0.86950 0.76304 0.91502 0.83606 0.83393 0.83382 0.90168 0.85731 0.85787 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 8.18 36.01 0.29 -0.93 16 2 C 0.10 1.82 6.84 -81.71 -0.56 1.26 16 3 C -0.06 -1.24 6.99 -83.55 -0.58 -1.82 16 4 C 0.51 12.84 7.77 -12.52 -0.10 12.75 16 5 O -0.59 -15.76 14.43 5.26 0.08 -15.69 16 6 N -0.53 -14.37 5.28 -11.95 -0.06 -14.43 16 7 C -0.30 -8.39 9.68 -14.99 -0.15 -8.54 16 8 H 0.11 3.13 7.15 -52.48 -0.38 2.75 16 9 C 0.02 0.66 5.50 -17.46 -0.10 0.56 16 10 N -0.88 -24.56 13.05 55.50 0.72 -23.83 16 11 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 N -0.20 -4.44 12.03 32.85 0.40 -4.04 16 16 N -0.08 -1.48 13.63 60.35 0.82 -0.66 16 17 N -0.33 -5.52 3.72 -6.70 -0.02 -5.55 16 18 C 0.15 2.02 6.13 -83.57 -0.51 1.51 16 19 C -0.11 -1.17 8.36 -39.41 -0.33 -1.50 16 20 C -0.09 -0.85 9.95 -39.45 -0.39 -1.24 16 21 C 0.05 0.54 6.50 -39.11 -0.25 0.28 16 22 C 0.07 0.75 6.49 -39.15 -0.25 0.49 16 23 C -0.10 -1.22 9.77 -39.25 -0.38 -1.60 16 24 O -0.30 -3.00 10.42 -32.90 -0.34 -3.35 16 25 C 0.02 0.11 7.26 37.40 0.27 0.38 16 26 C 0.02 0.10 7.26 37.40 0.27 0.37 16 27 O -0.30 -2.60 10.42 -33.03 -0.34 -2.94 16 28 H 0.09 1.12 8.12 -51.93 -0.42 0.70 16 29 H 0.07 0.75 6.99 -51.93 -0.36 0.39 16 30 H 0.11 1.83 6.75 -51.93 -0.35 1.48 16 31 H 0.40 10.97 7.58 -40.82 -0.31 10.66 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.15 1.36 7.01 -52.48 -0.37 1.00 16 34 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.15 1.95 8.06 -52.48 -0.42 1.52 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -33.71 341.11 -5.27 -38.98 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -3.86 Total: 8.60 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.77 Total: 1.97 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 1.85 Total: -48.51 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.61 Total: -21.98 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.71 -5.27 -38.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109122082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.354 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds