Wall clock time and date at job start Tue Mar 31 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46727 * 2 1 4 4 N 1.46498 * 109.47110 * 120.00035 * 2 1 3 5 5 S 1.65601 * 119.99919 * 265.00091 * 4 2 1 6 6 C 1.81403 * 104.44749 * 65.00022 * 5 4 2 7 7 O 1.42098 * 104.27567 * 181.07179 * 5 4 2 8 8 O 1.42100 * 104.27788 * 308.93015 * 5 4 2 9 9 C 1.50701 * 109.47018 * 240.00106 * 2 1 3 10 10 O 1.21274 * 120.00017 * 254.43525 * 9 2 1 11 11 N 1.34776 * 119.99875 * 74.44222 * 9 2 1 12 12 C 1.46498 * 120.00334 * 4.17854 * 11 9 2 13 13 C 1.50704 * 109.47174 * 95.41654 * 12 11 9 14 14 H 1.07993 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99905 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00403 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00009 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46786 * 59.99438 * 17 15 13 19 19 H 1.48490 * 109.47070 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46593 * 300.00179 * 17 15 13 21 21 C 1.46504 * 119.99813 * 184.18065 * 11 9 2 22 22 C 1.50703 * 109.46785 * 85.45179 * 21 11 9 23 23 C 1.34507 * 125.79174 * 90.00017 * 22 21 11 24 24 C 1.41384 * 106.84240 * 179.97438 * 23 22 21 25 25 C 1.34515 * 106.84044 * 359.97438 * 24 23 22 26 26 O 1.34302 * 108.41848 * 359.73721 * 25 24 23 27 27 H 1.09005 * 109.47319 * 65.92719 * 1 2 3 28 28 H 1.08999 * 109.47415 * 305.92351 * 1 2 3 29 29 H 1.09002 * 109.47252 * 185.91950 * 1 2 3 30 30 H 0.96998 * 120.00180 * 85.00592 * 4 2 1 31 31 H 1.08997 * 109.47029 * 60.00397 * 6 5 4 32 32 H 1.09004 * 109.46996 * 180.02562 * 6 5 4 33 33 H 1.08992 * 109.47117 * 299.99696 * 6 5 4 34 34 H 1.08998 * 109.47457 * 215.41957 * 12 11 9 35 35 H 1.09000 * 109.47215 * 335.41400 * 12 11 9 36 36 H 0.97000 * 120.00081 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.47156 * 205.44704 * 21 11 9 38 38 H 1.08996 * 109.47283 * 325.44958 * 21 11 9 39 39 H 1.08005 * 126.58302 * 0.03466 * 23 22 21 40 40 H 1.08000 * 126.58489 * 179.97438 * 24 23 22 41 41 H 1.08001 * 125.79052 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4122 0.1772 2.5505 6 6 0.8407 0.8989 3.0984 7 8 2.8606 -0.8029 3.4765 8 8 3.2874 1.1907 2.0751 9 6 2.0323 -0.7104 -1.2305 10 8 2.5001 -1.8255 -1.1384 11 7 1.9618 -0.1064 -2.4333 12 6 1.4822 1.2743 -2.5327 13 6 2.6591 2.2155 -2.5407 14 1 3.6638 1.8244 -2.4784 15 6 2.4531 3.5760 -2.6275 16 7 1.2296 4.0524 -2.7039 17 14 3.9119 4.7429 -2.6367 18 1 4.7831 4.4368 -3.7997 19 1 3.4257 6.1423 -2.7376 20 1 4.6865 4.5766 -1.3807 21 6 2.3647 -0.8307 -3.6413 22 6 1.2016 -1.6414 -4.1523 23 6 0.2751 -1.2202 -5.0317 24 6 -0.6222 -2.2952 -5.2277 25 6 -0.1899 -3.3091 -4.4567 26 8 0.9185 -2.9095 -3.8123 27 1 -0.3634 0.4192 -0.9383 28 1 -0.3634 0.6029 0.8322 29 1 -0.3634 -1.0222 0.1060 30 1 2.1111 -1.6561 1.1949 31 1 0.1315 0.1009 3.3184 32 1 1.0078 1.4946 3.9959 33 1 0.4386 1.5352 2.3101 34 1 0.9134 1.3959 -3.4545 35 1 0.8428 1.4992 -1.6790 36 1 1.0848 5.0096 -2.7646 37 1 2.6746 -0.1181 -4.4058 38 1 3.1957 -1.4956 -3.4062 39 1 0.2264 -0.2479 -5.4993 40 1 -1.4884 -2.3011 -5.8727 41 1 -0.6529 -4.2814 -4.3739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114178285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:32 Heat of formation + Delta-G solvation = -83.306365 kcal Electronic energy + Delta-G solvation = -27405.778581 eV Core-core repulsion = 23415.372136 eV Total energy + Delta-G solvation = -3990.406444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24035 -39.54689 -36.96315 -35.81555 -35.58174 -35.10197 -32.85684 -32.56292 -30.79152 -29.70287 -29.16822 -27.39008 -25.83606 -23.73107 -22.63681 -21.40103 -20.41708 -19.39182 -18.99484 -17.77308 -17.19880 -16.64556 -16.36287 -16.15569 -15.92709 -15.67749 -15.21989 -14.76408 -14.53978 -14.22696 -14.04802 -13.63192 -13.23955 -13.06923 -12.94403 -12.52926 -12.48023 -12.41813 -12.26820 -12.03570 -11.93831 -11.88051 -11.74454 -11.47148 -11.39114 -11.31645 -10.95674 -10.92282 -10.74588 -10.22603 -9.86734 -9.65243 -9.61667 -9.12878 -8.60482 -8.24119 -7.97274 -6.24502 -4.32136 0.35960 1.96204 2.76079 2.85270 3.08038 3.26530 3.30215 3.35642 3.42771 3.82205 3.92815 4.29845 4.33354 4.73423 4.87572 4.99438 5.03879 5.10330 5.25615 5.29232 5.33559 5.40766 5.51212 5.57258 5.73354 5.85043 6.01008 6.05425 6.16944 6.21912 6.24587 6.36684 6.55146 6.77259 7.02675 7.20514 7.32162 7.46426 7.70480 7.94474 8.12164 8.65375 8.81802 9.37196 10.82094 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.008209 B = 0.005932 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.082410 B = 4718.778548 C = 7254.939330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.127 3.873 3 H 0.132 0.868 4 N -1.101 6.101 5 S 2.612 3.388 6 C -0.677 4.677 7 O -0.965 6.965 8 O -0.946 6.946 9 C 0.522 3.478 10 O -0.554 6.554 11 N -0.588 5.588 12 C 0.228 3.772 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.069 3.931 16 N -0.891 5.891 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.271 1.271 21 C 0.197 3.803 22 C -0.015 4.015 23 C -0.202 4.202 24 C -0.217 4.217 25 C -0.052 4.052 26 O -0.166 6.166 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.422 0.578 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.040 0.960 35 H 0.048 0.952 36 H 0.267 0.733 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.540 -7.738 3.035 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.016 3.984 3 H 0.149 0.851 4 N -0.861 5.861 5 S 2.703 3.297 6 C -0.826 4.826 7 O -0.955 6.955 8 O -0.936 6.936 9 C 0.308 3.692 10 O -0.433 6.433 11 N -0.319 5.319 12 C 0.109 3.891 13 C -0.583 4.583 14 H 0.083 0.917 15 C -0.134 4.134 16 N -0.529 5.529 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.196 1.196 21 C 0.073 3.927 22 C -0.067 4.067 23 C -0.222 4.222 24 C -0.236 4.236 25 C -0.121 4.121 26 O -0.061 6.061 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.259 0.741 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.134 0.866 38 H 0.107 0.893 39 H 0.167 0.833 40 H 0.161 0.839 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.381 -8.002 3.653 10.312 hybrid contribution -0.374 0.639 -0.377 0.831 sum -5.756 -7.363 3.276 9.903 Atomic orbital electron populations 1.22407 0.93379 1.03004 1.04254 1.20745 0.95062 0.98415 0.84146 0.85088 1.55377 1.84011 1.20536 1.26192 1.04784 0.76777 0.74684 0.73447 1.30666 1.24742 1.14183 1.13058 1.93596 1.79635 1.59133 1.63125 1.93675 1.60468 1.60546 1.78889 1.20293 0.78344 0.85819 0.84743 1.90609 1.46480 1.20106 1.86070 1.48235 1.63678 1.15784 1.04185 1.19703 0.95615 0.74472 0.99291 1.21463 0.93360 0.91078 1.52400 0.91743 1.24900 0.96067 0.98129 0.94343 1.69898 1.19810 1.14020 1.49147 0.86581 0.82554 0.79476 0.79176 1.20074 1.21144 1.19613 1.19705 0.90938 0.93520 0.88553 1.23224 1.00970 0.83150 0.99365 1.21674 0.96640 1.00941 1.02928 1.21790 1.02906 0.94244 1.04637 1.23961 0.89279 1.00728 0.98106 1.84115 1.38216 1.27636 1.56178 0.89535 0.91436 0.91608 0.74124 0.85300 0.85453 0.84802 0.94223 0.93451 0.92380 0.86580 0.89304 0.83322 0.83896 0.78755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.02 37.16 0.34 -1.99 16 2 C 0.13 2.13 2.36 -69.08 -0.16 1.97 16 3 H 0.13 2.41 6.60 -51.93 -0.34 2.06 16 4 N -1.10 -16.34 5.25 -5.88 -0.03 -16.37 16 5 S 2.61 36.33 6.08 -107.50 -0.65 35.68 16 6 C -0.68 -6.25 10.17 101.05 1.03 -5.22 16 7 O -0.96 -15.56 18.08 -57.54 -1.04 -16.60 16 8 O -0.95 -17.51 17.39 -57.54 -1.00 -18.51 16 9 C 0.52 10.28 6.93 -10.99 -0.08 10.20 16 10 O -0.55 -11.80 15.61 5.56 0.09 -11.72 16 11 N -0.59 -11.58 2.45 -176.43 -0.43 -12.01 16 12 C 0.23 4.95 4.57 -5.19 -0.02 4.93 16 13 C -0.54 -13.47 9.38 -34.44 -0.32 -13.79 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -23.17 13.29 55.43 0.74 -22.43 16 17 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 21 C 0.20 3.50 5.95 -5.19 -0.03 3.47 16 22 C -0.02 -0.26 6.87 -35.63 -0.24 -0.51 16 23 C -0.20 -3.15 10.81 -39.70 -0.43 -3.58 16 24 C -0.22 -2.94 10.91 -39.70 -0.43 -3.37 16 25 C -0.05 -0.70 12.09 29.42 0.36 -0.35 16 26 O -0.17 -2.83 10.65 5.70 0.06 -2.77 16 27 H 0.09 1.28 6.28 -51.93 -0.33 0.96 16 28 H 0.07 0.72 5.91 -51.93 -0.31 0.41 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.42 6.11 8.05 -34.47 -0.28 5.83 16 31 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.13 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.13 1.20 6.69 -51.93 -0.35 0.85 16 34 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 35 H 0.05 1.01 4.56 -51.93 -0.24 0.78 16 36 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.12 1.94 8.04 -51.93 -0.42 1.52 16 38 H 0.09 1.60 7.51 -51.93 -0.39 1.21 16 39 H 0.15 2.21 8.06 -52.48 -0.42 1.79 16 40 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -33.80 360.62 -7.11 -40.91 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.15 Total: 9.73 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.10 Total: -6.59 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.27 Total: -50.82 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -1.89 Total: -49.60 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 36.33 SS G_CDS: -0.65 Total: 35.68 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.80 -7.11 -40.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114178285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.395 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds