Wall clock time and date at job start Tue Mar 31 2020 06:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00588 * 2 1 4 4 O 1.20833 * 119.99720 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00399 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47137 * 179.97438 * 5 3 2 7 7 C 1.36909 * 120.00348 * 262.81630 * 6 5 3 8 8 H 1.08000 * 120.00385 * 204.94697 * 7 6 5 9 9 C 1.39025 * 119.99627 * 24.94981 * 7 6 5 10 10 N 1.31376 * 120.00337 * 9.12551 * 9 7 6 11 11 Si 1.86801 * 120.00101 * 189.13008 * 9 7 6 12 12 H 1.48509 * 109.46873 * 59.99414 * 11 9 7 13 13 H 1.48494 * 109.47503 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47026 * 300.00148 * 11 9 7 15 15 C 1.34781 * 120.00056 * 82.81854 * 6 5 3 16 16 O 1.21598 * 119.99493 * 5.23857 * 15 6 5 17 17 C 1.47654 * 120.00186 * 185.23380 * 15 6 5 18 18 C 1.40652 * 126.05193 * 186.18654 * 17 15 6 19 19 N 1.31244 * 106.62083 * 179.97438 * 18 17 15 20 20 N 1.40102 * 107.18753 * 359.97438 * 19 18 17 21 21 C 1.40128 * 125.55964 * 179.97438 * 20 19 18 22 22 C 1.38873 * 120.06749 * 0.03119 * 21 20 19 23 23 C 1.38106 * 119.92970 * 179.97438 * 22 21 20 24 24 C 1.38289 * 120.07260 * 0.02562 * 23 22 21 25 25 C 1.38288 * 120.13710 * 0.02562 * 24 23 22 26 26 C 1.38113 * 120.06689 * 359.97438 * 25 24 23 27 27 N 1.28706 * 108.88305 * 0.24422 * 20 19 18 28 28 H 1.08997 * 109.46824 * 300.00412 * 1 2 3 29 29 H 1.09003 * 109.46640 * 60.00127 * 1 2 3 30 30 H 1.08993 * 109.47340 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47142 * 59.99495 * 5 3 2 32 32 H 1.08995 * 109.47204 * 299.99831 * 5 3 2 33 33 H 0.96998 * 120.00288 * 180.02562 * 10 9 7 34 34 H 1.08003 * 126.69301 * 359.94757 * 18 17 15 35 35 H 1.07996 * 120.03176 * 0.27639 * 22 21 20 36 36 H 1.07999 * 119.96336 * 179.97438 * 23 22 21 37 37 H 1.07993 * 119.93331 * 180.02562 * 24 23 22 38 38 H 1.07994 * 119.96590 * 179.97438 * 25 24 23 39 39 H 1.08001 * 120.03143 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.3177 3.2938 -1.1777 8 1 4.9831 4.1444 -1.1721 9 6 3.8022 2.8224 -2.3797 10 7 2.8584 1.9085 -2.3763 11 14 4.4515 3.4883 -3.9997 12 1 5.9071 3.2120 -4.1005 13 1 3.7435 2.8281 -5.1257 14 1 4.2206 4.9540 -4.0605 15 6 4.0334 3.3675 1.1568 16 8 3.8280 2.7985 2.2116 17 6 4.3395 4.8119 1.1444 18 6 4.5453 5.6242 2.2741 19 7 4.7893 6.8338 1.8273 20 7 4.7368 6.7769 0.4285 21 6 4.9408 7.8581 -0.4393 22 6 5.2232 9.1176 0.0728 23 6 5.4242 10.1811 -0.7851 24 6 5.3441 9.9928 -2.1528 25 6 5.0620 8.7400 -2.6659 26 6 4.8599 7.6725 -1.8131 27 7 4.4650 5.5709 0.0706 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9558 0.7807 -0.8908 32 1 3.9565 0.7805 0.8891 33 1 2.4989 1.5793 -3.2149 34 1 4.5092 5.3132 3.3078 35 1 5.2903 9.2644 1.1406 36 1 5.6435 11.1610 -0.3875 37 1 5.5021 10.8259 -2.8216 38 1 4.9997 8.5962 -3.7344 39 1 4.6401 6.6942 -2.2145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120522125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:16 Heat of formation + Delta-G solvation = 49.406983 kcal Electronic energy + Delta-G solvation = -28260.197249 eV Core-core repulsion = 24172.394487 eV Total energy + Delta-G solvation = -4087.802762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.06308 -39.47260 -39.04226 -38.08747 -35.47232 -34.68473 -33.46589 -32.04909 -31.56620 -30.86386 -29.47259 -28.29531 -26.32077 -25.17481 -23.95476 -23.20314 -21.70942 -21.01826 -20.28023 -19.32683 -18.29325 -17.36239 -16.62567 -16.19034 -16.04236 -15.80531 -15.43790 -15.22320 -15.01237 -14.66419 -14.36820 -14.24325 -13.83942 -13.52606 -13.45718 -13.07555 -12.78700 -12.51317 -12.29754 -11.86461 -11.62876 -11.45387 -11.36359 -11.31566 -11.19758 -10.91155 -10.78335 -10.53016 -10.35733 -10.02172 -9.82952 -9.70199 -9.46017 -9.07694 -9.04569 -8.97217 -8.07196 -7.92881 -6.57101 -4.07985 0.82112 1.30628 2.20445 2.37756 2.43196 3.09186 3.12269 3.14628 3.57219 3.68681 3.77977 4.01499 4.22055 4.28088 4.51210 4.86020 4.93152 5.00829 5.09483 5.31179 5.39447 5.50675 5.60618 5.69162 5.77245 5.92473 5.94540 5.97057 6.13034 6.19009 6.26885 6.35418 6.37488 6.44761 6.57421 6.62059 6.73195 7.17724 7.40083 7.43518 7.54015 8.25267 8.38650 8.89783 9.07687 9.22823 9.61281 10.49755 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.004494 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.816522 B = 6229.277216 C = 7622.305774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.487 3.513 4 O -0.500 6.500 5 C 0.157 3.843 6 N -0.403 5.403 7 C -0.313 4.313 8 H 0.122 0.878 9 C 0.039 3.961 10 N -0.871 5.871 11 Si 0.930 3.070 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.538 3.462 16 O -0.595 6.595 17 C -0.011 4.011 18 C 0.069 3.931 19 N -0.299 5.299 20 N -0.191 5.191 21 C 0.175 3.825 22 C -0.119 4.119 23 C -0.103 4.103 24 C -0.130 4.130 25 C -0.099 4.099 26 C -0.116 4.116 27 N -0.177 5.177 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.275 0.725 34 H 0.211 0.789 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.341 7.302 -0.722 8.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.292 6.292 3 C 0.328 3.672 4 O -0.384 6.384 5 C 0.032 3.968 6 N -0.120 5.120 7 C -0.442 4.442 8 H 0.139 0.861 9 C -0.166 4.166 10 N -0.510 5.510 11 Si 0.756 3.244 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.194 1.194 15 C 0.326 3.674 16 O -0.480 6.480 17 C -0.178 4.178 18 C -0.123 4.123 19 N -0.126 5.126 20 N -0.081 5.081 21 C 0.083 3.917 22 C -0.140 4.140 23 C -0.122 4.122 24 C -0.149 4.149 25 C -0.118 4.118 26 C -0.137 4.137 27 N -0.019 5.019 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.146 0.854 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.227 0.773 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.085 8.264 -1.102 8.889 hybrid contribution -0.412 -0.375 -0.483 0.737 sum 2.673 7.888 -1.585 8.478 Atomic orbital electron populations 1.22932 0.78635 1.01819 1.01649 1.86442 1.21692 1.35319 1.85725 1.23754 0.92117 0.80623 0.70660 1.90535 1.66464 1.36352 1.45073 1.20515 0.87476 0.84807 1.04034 1.43229 1.54299 1.08032 1.06455 1.20199 1.26329 1.15455 0.82236 0.86067 1.25374 0.94584 0.96490 1.00188 1.69645 1.24057 1.28780 1.28476 0.85939 0.78909 0.79385 0.80183 1.19566 1.20775 1.19407 1.16703 0.83305 0.82975 0.84452 1.90654 1.57717 1.68599 1.31033 1.23094 1.09304 0.97408 0.87978 1.25031 0.96992 0.88930 1.01356 1.77772 1.22717 1.21884 0.90263 1.48544 1.51253 1.05535 1.02779 1.17370 1.01927 0.84380 0.87988 1.20887 1.01502 0.90358 1.01266 1.20967 0.99763 0.98307 0.93146 1.21220 1.00905 0.97358 0.95386 1.21040 0.98767 0.92048 0.99896 1.21156 1.00541 1.01472 0.90538 1.74557 1.11133 0.90438 1.25735 0.93129 0.92649 0.89568 0.85402 0.89644 0.91387 0.77256 0.84445 0.85175 0.85596 0.85024 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.37 -7.94 10.56 -39.25 -0.41 -8.35 16 3 C 0.49 11.93 6.03 36.00 0.22 12.15 16 4 O -0.50 -13.87 15.60 -18.76 -0.29 -14.16 16 5 C 0.16 3.68 5.16 -5.20 -0.03 3.66 16 6 N -0.40 -10.17 2.18 -117.24 -0.26 -10.43 16 7 C -0.31 -7.84 8.46 -14.99 -0.13 -7.97 16 8 H 0.12 3.00 5.38 -52.49 -0.28 2.71 16 9 C 0.04 0.95 5.11 -17.45 -0.09 0.86 16 10 N -0.87 -22.05 8.87 55.50 0.49 -21.56 16 11 Si 0.93 19.13 29.56 -169.99 -5.03 14.10 16 12 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 13 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 15 C 0.54 13.46 7.36 -12.41 -0.09 13.37 16 16 O -0.59 -15.40 16.58 5.28 0.09 -15.31 16 17 C -0.01 -0.24 6.78 -83.00 -0.56 -0.81 16 18 C 0.07 1.32 11.92 -16.89 -0.20 1.12 16 19 N -0.30 -5.67 11.90 30.86 0.37 -5.30 16 20 N -0.19 -3.81 4.44 32.48 0.14 -3.67 16 21 C 0.18 2.99 6.74 -83.60 -0.56 2.43 16 22 C -0.12 -1.65 9.65 -39.39 -0.38 -2.03 16 23 C -0.10 -1.13 10.04 -39.61 -0.40 -1.53 16 24 C -0.13 -1.37 10.04 -39.54 -0.40 -1.77 16 25 C -0.10 -1.23 10.04 -39.61 -0.40 -1.63 16 26 C -0.12 -1.87 9.61 -39.40 -0.38 -2.24 16 27 N -0.18 -3.98 7.96 33.28 0.26 -3.71 16 28 H 0.05 0.86 8.13 -51.93 -0.42 0.43 16 29 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.13 2.94 6.52 -51.93 -0.34 2.60 16 32 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 33 H 0.28 6.70 8.31 -40.82 -0.34 6.37 16 34 H 0.21 3.28 8.06 -52.48 -0.42 2.85 16 35 H 0.14 1.83 7.67 -52.49 -0.40 1.43 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.15 2.60 7.67 -52.49 -0.40 2.20 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -32.13 346.23 -5.66 -37.79 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -3.91 Total: 7.94 kcal Atomic # 6 Polarization: 19.77 SS G_CDS: -2.33 Total: 17.44 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 1.01 Total: -44.67 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.62 Total: -37.82 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.13 -5.66 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120522125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.194 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds