Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47335 * 2 1 4 4 N 1.46502 * 109.47123 * 180.02562 * 3 2 1 5 5 C 1.36965 * 119.99939 * 274.42086 * 4 3 2 6 6 H 1.08004 * 119.99509 * 306.46962 * 5 4 3 7 7 C 1.38976 * 120.00120 * 126.46730 * 5 4 3 8 8 N 1.31405 * 119.99802 * 352.34857 * 7 5 4 9 9 Si 1.86797 * 119.99803 * 172.34375 * 7 5 4 10 10 H 1.48502 * 109.47188 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46959 * 120.00425 * 9 7 5 12 12 H 1.48501 * 109.47281 * 240.00327 * 9 7 5 13 13 C 1.34775 * 120.00114 * 94.42334 * 4 3 2 14 14 O 1.21643 * 119.99977 * 182.26807 * 13 4 3 15 15 C 1.47302 * 120.00087 * 2.26396 * 13 4 3 16 16 C 1.36500 * 127.19626 * 311.08673 * 15 13 4 17 17 O 1.33676 * 108.37560 * 179.97438 * 16 15 13 18 18 C 1.34215 * 110.91191 * 359.97438 * 17 16 15 19 19 S 1.76202 * 125.42807 * 179.97438 * 18 17 16 20 20 O 1.42098 * 106.39867 * 23.56522 * 19 18 17 21 21 O 1.42096 * 106.40293 * 156.48706 * 19 18 17 22 22 N 1.65600 * 107.21656 * 270.02901 * 19 18 17 23 23 C 1.46502 * 119.99984 * 90.00162 * 22 19 18 24 24 C 1.46500 * 119.99717 * 269.99741 * 22 19 18 25 25 C 1.34173 * 109.14548 * 0.02562 * 18 17 16 26 26 H 1.09004 * 109.46976 * 60.00182 * 1 2 3 27 27 H 1.08996 * 109.47556 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47093 * 300.00519 * 1 2 3 29 29 H 1.09003 * 109.47346 * 239.99948 * 2 1 3 30 30 H 1.09004 * 109.46976 * 119.99818 * 2 1 3 31 31 H 1.09000 * 109.47454 * 59.99702 * 3 2 1 32 32 H 1.09003 * 109.46663 * 299.99368 * 3 2 1 33 33 H 0.97008 * 119.99601 * 185.00734 * 8 7 5 34 34 H 1.07995 * 125.80890 * 359.97438 * 16 15 13 35 35 H 1.08998 * 109.47101 * 89.99861 * 23 22 19 36 36 H 1.09003 * 109.46532 * 209.99583 * 23 22 19 37 37 H 1.08992 * 109.46961 * 329.99410 * 23 22 19 38 38 H 1.08993 * 109.47335 * 0.02562 * 24 22 19 39 39 H 1.08998 * 109.47325 * 120.00811 * 24 22 19 40 40 H 1.09004 * 109.46992 * 239.99877 * 24 22 19 41 41 H 1.07997 * 127.02410 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1903 1.3508 1.1817 6 1 3.9792 2.0432 1.9833 7 6 5.1573 0.3669 1.3500 8 7 5.3104 -0.5666 0.4379 9 14 6.2395 0.3717 2.8725 10 1 5.8692 1.5191 3.7395 11 1 6.0462 -0.8963 3.6211 12 1 7.6629 0.4956 2.4679 13 6 4.1784 1.5326 -1.1646 14 8 5.3942 1.4911 -1.1687 15 6 3.4423 1.6814 -2.4318 16 6 2.3833 0.9361 -2.8634 17 8 2.0071 1.3930 -4.0620 18 6 2.7796 2.4208 -4.4470 19 16 2.6196 3.3077 -5.9610 20 8 1.2762 3.1311 -6.3894 21 8 3.2040 4.5843 -5.7420 22 7 3.5715 2.5433 -7.0799 23 6 3.0140 1.4676 -7.9035 24 6 4.9711 2.9429 -7.2461 25 6 3.6939 2.6645 -3.4957 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 5.9341 -1.2941 0.5885 34 1 1.9272 0.1168 -2.3277 35 1 2.5949 1.8894 -8.8170 36 1 3.8025 0.7595 -8.1586 37 1 2.2299 0.9536 -7.3476 38 1 5.2030 3.7512 -6.5527 39 1 5.6191 2.0909 -7.0404 40 1 5.1327 3.2835 -8.2689 41 1 4.4582 3.4275 -3.5085 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121783788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = -70.621934 kcal Electronic energy + Delta-G solvation = -27194.657330 eV Core-core repulsion = 23204.800924 eV Total energy + Delta-G solvation = -3989.856406 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.26422 -38.30424 -37.46962 -36.40307 -36.03098 -35.06977 -33.05098 -32.35246 -31.16512 -29.87191 -28.35516 -25.88105 -24.95219 -24.90367 -22.44111 -22.16055 -21.06339 -20.00040 -18.92538 -18.12845 -17.68727 -16.60947 -16.28402 -16.24649 -15.93735 -15.34570 -14.93827 -14.65246 -14.60029 -14.21030 -13.89844 -13.59959 -13.33360 -13.21177 -12.81106 -12.77746 -12.67130 -12.63598 -12.28598 -12.07457 -11.90460 -11.79474 -11.68259 -11.53006 -11.42805 -11.09183 -11.03397 -10.80744 -10.52907 -10.28907 -10.06626 -9.72157 -9.43013 -8.86542 -8.77100 -8.30414 -7.18157 -6.19678 -4.06042 0.08272 1.32890 2.28630 2.68946 3.12718 3.23160 3.32236 3.34511 3.53580 4.15456 4.28542 4.34417 4.50843 4.80253 5.02994 5.07728 5.10835 5.15170 5.16076 5.34638 5.46707 5.53155 5.56352 5.57282 5.66050 5.69552 5.74186 5.92276 5.96119 6.01726 6.19483 6.20655 6.30670 6.35652 6.48845 6.67464 6.96761 6.99579 7.55442 8.24561 8.97395 9.03068 9.49451 10.15431 10.89091 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.003757 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.477870 B = 7450.577483 C = 8328.396222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C 0.101 3.899 4 N -0.446 5.446 5 C -0.343 4.343 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.839 5.839 9 Si 0.915 3.085 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.544 3.456 14 O -0.524 6.524 15 C -0.205 4.205 16 C 0.025 3.975 17 O -0.131 6.131 18 C -0.597 4.597 19 S 2.727 3.273 20 O -0.941 6.941 21 O -0.936 6.936 22 N -1.000 6.000 23 C 0.092 3.908 24 C 0.082 3.918 25 C -0.045 4.045 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.264 0.736 34 H 0.223 0.777 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.616 1.916 -13.386 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.175 4.175 3 C -0.023 4.023 4 N -0.168 5.168 5 C -0.470 4.470 6 H 0.097 0.903 7 C -0.141 4.141 8 N -0.472 5.472 9 Si 0.742 3.258 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.206 1.206 13 C 0.330 3.670 14 O -0.402 6.402 15 C -0.210 4.210 16 C -0.047 4.047 17 O -0.025 6.025 18 C -0.726 4.726 19 S 2.811 3.189 20 O -0.931 6.931 21 O -0.927 6.927 22 N -0.840 5.840 23 C -0.054 4.054 24 C -0.064 4.064 25 C -0.067 4.067 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.534 2.360 -13.754 15.409 hybrid contribution 1.037 -0.880 1.445 1.985 sum -5.496 1.480 -12.309 13.561 Atomic orbital electron populations 1.21790 0.96507 1.01169 1.01495 1.22002 0.94082 0.98590 1.02793 1.21674 0.84301 0.95531 1.00797 1.43066 1.02693 1.65952 1.05114 1.19025 1.20329 1.15628 0.92049 0.90342 1.25467 0.97301 0.94424 0.96900 1.69815 1.34091 1.10469 1.32844 0.86100 0.80476 0.77899 0.81363 1.19389 1.20951 1.20643 1.17114 0.86884 0.81237 0.81767 1.90647 1.13108 1.50732 1.85673 1.22463 0.99628 0.99400 0.99532 1.25552 0.95573 0.99149 0.84393 1.83857 1.48369 1.38330 1.31966 1.35405 1.06311 1.07769 1.23145 1.01464 0.73183 0.72880 0.71414 1.93579 1.33401 1.85969 1.80180 1.93636 1.78740 1.34616 1.85668 1.57341 1.23529 1.51782 1.51340 1.21547 0.99313 0.89270 0.95234 1.21678 0.79955 1.01331 1.03398 1.22938 0.96017 0.97129 0.90606 0.93184 0.93057 0.92695 0.92810 0.90436 0.91626 0.92763 0.92566 0.76070 0.91881 0.90626 0.90510 0.89341 0.91589 0.91228 0.81412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.15 0.37 -1.63 16 2 C -0.14 -2.36 5.71 -26.73 -0.15 -2.52 16 3 C 0.10 1.96 4.91 -4.04 -0.02 1.94 16 4 N -0.45 -11.03 2.44 -116.06 -0.28 -11.32 16 5 C -0.34 -9.23 9.05 -14.99 -0.14 -9.36 16 6 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 7 C 0.07 1.89 4.73 -17.46 -0.08 1.81 16 8 N -0.84 -24.11 11.80 55.50 0.66 -23.46 16 9 Si 0.91 21.24 29.56 -169.99 -5.03 16.21 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.54 14.00 6.90 -12.58 -0.09 13.91 16 14 O -0.52 -15.71 15.24 5.24 0.08 -15.63 16 15 C -0.20 -4.30 5.15 -103.28 -0.53 -4.83 16 16 C 0.03 0.45 9.98 30.11 0.30 0.75 16 17 O -0.13 -2.18 10.52 7.59 0.08 -2.10 16 18 C -0.60 -9.63 7.32 29.30 0.21 -9.42 16 19 S 2.73 37.01 5.79 -107.50 -0.62 36.39 16 20 O -0.94 -14.51 17.09 -57.28 -0.98 -15.48 16 21 O -0.94 -14.16 16.38 -57.17 -0.94 -15.10 16 22 N -1.00 -10.45 3.58 -129.21 -0.46 -10.91 16 23 C 0.09 0.76 10.33 59.85 0.62 1.38 16 24 C 0.08 0.70 10.67 59.85 0.64 1.34 16 25 C -0.04 -0.82 10.84 -37.45 -0.41 -1.22 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.95 5.52 -51.93 -0.29 0.66 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 32 H 0.05 0.97 5.77 -51.93 -0.30 0.67 16 33 H 0.26 7.25 8.32 -40.82 -0.34 6.91 16 34 H 0.22 3.50 4.72 -52.49 -0.25 3.25 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 37 H 0.08 0.66 7.79 -51.93 -0.40 0.25 16 38 H 0.09 0.80 6.91 -51.93 -0.36 0.44 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -36.16 357.32 -6.75 -42.91 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.36 Total: 0.96 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 0.73 Total: -7.85 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.09 Total: -45.69 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -1.76 Total: -48.31 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 16 Polarization: 37.01 SS G_CDS: -0.62 Total: 36.39 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.16 -6.75 -42.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121783788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.716 kcal (2) G-P(sol) polarization free energy of solvation -36.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds