Wall clock time and date at job start Tue Mar 31 2020 05:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31285 * 1 3 3 Si 1.86799 * 120.00107 * 2 1 4 4 H 1.48496 * 109.47603 * 240.00021 * 3 2 1 5 5 H 1.48497 * 109.47143 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46974 * 120.00109 * 3 2 1 7 7 C 1.38993 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00201 * 180.02562 * 7 2 1 9 9 N 1.37317 * 119.99904 * 359.97438 * 7 2 1 10 10 C 1.36499 * 126.06287 * 180.02562 * 9 7 2 11 11 C 1.35701 * 107.50058 * 179.97438 * 10 9 7 12 12 N 1.40540 * 126.08402 * 180.26870 * 11 10 9 13 13 C 1.34773 * 120.00330 * 179.71107 * 12 11 10 14 14 O 1.21623 * 119.99823 * 359.97438 * 13 12 11 15 15 C 1.47513 * 120.00313 * 179.97438 * 13 12 11 16 16 C 1.39718 * 120.18967 * 359.97438 * 15 13 12 17 17 C 1.37789 * 119.90449 * 180.02562 * 16 15 13 18 18 C 1.38546 * 120.30019 * 0.02562 * 17 16 15 19 19 C 1.38058 * 120.39494 * 0.02562 * 18 17 16 20 20 C 1.38704 * 120.08461 * 359.67508 * 19 18 17 21 21 O 1.35654 * 120.15517 * 180.30201 * 20 19 18 22 22 C 1.42899 * 116.99983 * 0.29362 * 21 20 19 23 23 C 1.50697 * 109.47350 * 179.97438 * 22 21 20 24 24 N 1.34780 * 120.00025 * 179.97438 * 23 22 21 25 25 O 1.21278 * 120.00074 * 0.02562 * 23 22 21 26 26 C 1.40665 * 107.83127 * 359.97438 * 11 10 9 27 27 N 1.30901 * 108.39014 * 0.02562 * 26 11 10 28 28 H 0.97004 * 120.00410 * 359.97438 * 1 2 3 29 29 H 1.07996 * 126.25296 * 359.97438 * 10 9 7 30 30 H 0.97008 * 119.99443 * 359.70309 * 12 11 10 31 31 H 1.07997 * 120.04989 * 0.02909 * 16 15 13 32 32 H 1.08001 * 119.84678 * 179.97438 * 17 16 15 33 33 H 1.08005 * 119.80530 * 179.97438 * 18 17 16 34 34 H 1.07997 * 119.96104 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.47381 * 300.00390 * 22 21 20 36 36 H 1.09004 * 109.46908 * 59.99607 * 22 21 20 37 37 H 0.97003 * 119.99819 * 0.02562 * 24 23 22 38 38 H 0.96996 * 120.00003 * 179.97438 * 24 23 22 39 39 H 1.08001 * 125.80441 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.1006 1.6965 -1.2124 5 1 1.2819 2.7464 0.0006 6 1 3.1007 1.6963 1.2125 7 6 2.0078 -1.2037 -0.0005 8 1 3.0878 -1.2038 -0.0001 9 7 1.3212 -2.3929 -0.0005 10 6 1.8749 -3.6405 -0.0005 11 6 0.8576 -4.5385 0.0000 12 7 0.9887 -5.9378 0.0056 13 6 -0.1105 -6.7176 0.0114 14 8 -1.2159 -6.2104 0.0123 15 6 0.0271 -8.1863 0.0166 16 6 1.2950 -8.7732 0.0150 17 6 1.4167 -10.1457 0.0194 18 6 0.2869 -10.9476 0.0248 19 6 -0.9720 -10.3808 0.0254 20 6 -1.1133 -9.0010 0.0273 21 8 -2.3495 -8.4426 0.0340 22 6 -3.4648 -9.3359 0.0454 23 6 -4.7451 -8.5410 0.0522 24 7 -5.9332 -9.1771 0.0627 25 8 -4.7063 -7.3288 0.0473 26 6 -0.3515 -3.8197 0.0010 27 7 -0.0717 -2.5409 0.0004 28 1 -0.4851 0.8400 0.0004 29 1 2.9300 -3.8709 -0.0009 30 1 1.8704 -6.3423 0.0051 31 1 2.1784 -8.1521 0.0104 32 1 2.3972 -10.5984 0.0177 33 1 0.3915 -12.0226 0.0278 34 1 -1.8479 -11.0126 0.0292 35 1 -3.4336 -9.9675 -0.8423 36 1 -3.4207 -9.9607 0.9375 37 1 -5.9643 -10.1467 0.0663 38 1 -6.7573 -8.6655 0.0675 39 1 -1.3422 -4.2497 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139589721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:51 Heat of formation + Delta-G solvation = 17.197779 kcal Electronic energy + Delta-G solvation = -26921.489173 eV Core-core repulsion = 22832.289715 eV Total energy + Delta-G solvation = -4089.199458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71358 -39.72769 -39.23964 -38.02625 -37.20134 -34.04691 -33.91861 -33.07703 -31.45566 -30.37731 -30.06457 -28.44335 -27.49032 -24.94090 -23.73108 -22.60771 -21.08617 -20.78282 -20.34709 -19.22422 -18.55488 -17.85875 -17.44688 -16.83243 -16.52817 -16.40796 -15.81249 -15.37741 -15.09231 -14.79146 -14.63433 -14.60526 -14.04872 -14.04406 -13.74624 -13.13059 -13.06701 -12.83829 -12.73943 -12.51531 -11.87445 -11.59972 -11.40309 -11.30797 -11.26602 -11.16621 -10.84102 -10.48844 -10.06256 -9.99412 -9.93587 -9.18434 -9.03507 -8.95945 -8.66346 -8.36990 -7.91977 -6.54167 -6.44844 -4.10916 0.82848 1.22934 2.42214 2.52035 2.99516 3.10932 3.13978 3.15188 3.61534 3.65695 3.69710 3.96747 4.04322 4.42184 4.56083 4.63096 4.66718 4.67219 4.74116 4.84280 4.99457 5.08815 5.12670 5.28863 5.39166 5.65829 5.98951 6.07516 6.25219 6.36385 6.46436 6.53898 6.61321 6.96532 7.02219 7.11763 7.24390 7.29611 7.39689 7.97709 8.05826 8.35460 8.42882 8.77686 9.06593 9.50544 9.80849 10.51125 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.002864 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.630441 B = 9774.185474 C =11613.628479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.115 0.885 9 N -0.145 5.145 10 C -0.086 4.086 11 C -0.055 4.055 12 N -0.623 5.623 13 C 0.534 3.466 14 O -0.501 6.501 15 C -0.148 4.148 16 C -0.052 4.052 17 C -0.165 4.165 18 C -0.062 4.062 19 C -0.223 4.223 20 C 0.179 3.821 21 O -0.249 6.249 22 C 0.033 3.967 23 C 0.512 3.488 24 N -0.856 5.856 25 O -0.493 6.493 26 C -0.031 4.031 27 N -0.260 5.260 28 H 0.274 0.726 29 H 0.145 0.855 30 H 0.393 0.607 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.399 0.601 38 H 0.408 0.592 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 -25.527 0.112 25.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.132 0.868 9 N 0.087 4.913 10 C -0.237 4.237 11 C -0.160 4.160 12 N -0.267 5.267 13 C 0.321 3.679 14 O -0.376 6.376 15 C -0.152 4.152 16 C -0.070 4.070 17 C -0.184 4.184 18 C -0.080 4.080 19 C -0.242 4.242 20 C 0.131 3.869 21 O -0.159 6.159 22 C -0.046 4.046 23 C 0.294 3.706 24 N -0.424 5.424 25 O -0.364 6.364 26 C -0.207 4.207 27 N -0.091 5.091 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.226 0.774 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.227 0.773 38 H 0.239 0.761 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.534 -22.751 0.107 23.024 hybrid contribution 0.933 -1.107 0.007 1.448 sum -2.601 -23.858 0.114 23.999 Atomic orbital electron populations 1.70215 1.06088 1.27957 1.35408 1.25631 0.95679 1.00185 0.95634 0.85914 0.79117 0.79813 0.79370 1.19230 1.20198 1.19236 1.19788 0.91563 0.80626 1.53617 0.86776 1.44534 1.04084 1.03224 1.39410 1.21230 0.96717 0.85435 1.20300 1.17251 0.94298 0.81171 1.23293 1.42396 1.07888 1.04475 1.71965 1.17807 0.84888 0.85419 0.79825 1.90813 1.24907 1.73852 1.48029 1.19551 0.91512 0.93710 1.10447 1.21245 0.95567 0.95309 0.94923 1.20977 0.98953 0.93291 1.05146 1.21039 0.91702 0.99899 0.95398 1.21179 0.99211 0.92865 1.10950 1.19028 0.84512 0.90908 0.92496 1.86522 1.10504 1.32101 1.86775 1.22502 0.85786 0.92756 1.03556 1.20038 0.84992 0.88590 0.76981 1.43656 1.07928 1.11171 1.79630 1.90941 1.86727 1.13472 1.45247 1.24192 0.98236 0.90649 1.07588 1.78255 0.90008 1.15155 1.25671 0.91485 0.83789 0.77370 0.84806 0.85345 0.85495 0.85085 0.89029 0.89037 0.77280 0.76061 0.80520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.49 11.81 55.50 0.66 -21.84 16 2 C 0.05 1.23 5.50 -17.51 -0.10 1.13 16 3 Si 0.93 19.66 29.55 -169.99 -5.02 14.64 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.32 -8.92 10.25 -14.81 -0.15 -9.07 16 8 H 0.11 2.79 7.83 -52.48 -0.41 2.38 16 9 N -0.14 -4.17 3.74 -11.40 -0.04 -4.21 16 10 C -0.09 -2.13 11.49 -16.38 -0.19 -2.32 16 11 C -0.05 -1.35 6.90 -83.85 -0.58 -1.93 16 12 N -0.62 -12.26 5.41 -10.94 -0.06 -12.32 16 13 C 0.53 10.85 7.73 -12.48 -0.10 10.76 16 14 O -0.50 -12.46 12.31 -16.62 -0.20 -12.66 16 15 C -0.15 -2.28 5.89 -104.85 -0.62 -2.90 16 16 C -0.05 -0.58 9.54 -39.19 -0.37 -0.96 16 17 C -0.17 -1.46 10.02 -39.63 -0.40 -1.86 16 18 C -0.06 -0.51 10.03 -39.53 -0.40 -0.90 16 19 C -0.22 -2.13 9.03 -39.48 -0.36 -2.48 16 20 C 0.18 2.51 6.70 -38.69 -0.26 2.26 16 21 O -0.25 -4.01 7.74 -48.92 -0.38 -4.39 16 22 C 0.03 0.33 5.22 36.00 0.19 0.52 16 23 C 0.51 6.21 8.18 -10.99 -0.09 6.12 16 24 N -0.86 -5.48 8.87 31.22 0.28 -5.20 16 25 O -0.49 -9.48 17.34 -14.35 -0.25 -9.73 16 26 C -0.03 -0.89 10.85 -17.03 -0.18 -1.07 16 27 N -0.26 -8.03 10.40 30.80 0.32 -7.71 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.14 2.96 8.06 -52.49 -0.42 2.54 16 30 H 0.39 5.92 6.86 -40.82 -0.28 5.64 16 31 H 0.13 1.23 6.40 -52.49 -0.34 0.89 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.13 0.80 6.30 -52.49 -0.33 0.47 16 35 H 0.09 0.60 7.65 -51.93 -0.40 0.20 16 36 H 0.09 0.60 7.68 -51.93 -0.40 0.20 16 37 H 0.40 0.89 8.83 -40.82 -0.36 0.53 16 38 H 0.41 2.42 8.93 -40.82 -0.36 2.06 16 39 H 0.18 5.17 5.91 -52.49 -0.31 4.86 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -42.34 344.68 -6.70 -49.04 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -3.59 Total: 11.89 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -3.60 Total: -2.70 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 1.15 Total: -51.28 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.83 Total: -26.78 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -42.34 -6.70 -49.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139589721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.239 kcal (2) G-P(sol) polarization free energy of solvation -42.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds