Wall clock time and date at job start Tue Mar 31 2020 05:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31285 * 1 3 3 Si 1.86799 * 120.00107 * 2 1 4 4 H 1.48496 * 109.47603 * 240.00021 * 3 2 1 5 5 H 1.48497 * 109.47143 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46974 * 120.00109 * 3 2 1 7 7 C 1.38993 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00201 * 180.02562 * 7 2 1 9 9 N 1.37317 * 119.99904 * 359.97438 * 7 2 1 10 10 C 1.36499 * 126.06287 * 180.02562 * 9 7 2 11 11 C 1.35701 * 107.50058 * 179.97438 * 10 9 7 12 12 N 1.40540 * 126.08402 * 180.26870 * 11 10 9 13 13 C 1.34773 * 120.00330 * 179.71107 * 12 11 10 14 14 O 1.21623 * 119.99823 * 359.97438 * 13 12 11 15 15 C 1.47513 * 120.00313 * 179.97438 * 13 12 11 16 16 C 1.39718 * 120.18967 * 359.97438 * 15 13 12 17 17 C 1.37789 * 119.90449 * 180.02562 * 16 15 13 18 18 C 1.38546 * 120.30019 * 0.02562 * 17 16 15 19 19 C 1.38058 * 120.39494 * 0.02562 * 18 17 16 20 20 C 1.38704 * 120.08461 * 359.67508 * 19 18 17 21 21 O 1.35654 * 120.15517 * 180.30201 * 20 19 18 22 22 C 1.42899 * 116.99983 * 0.29362 * 21 20 19 23 23 C 1.50697 * 109.47350 * 179.97438 * 22 21 20 24 24 N 1.34780 * 120.00025 * 179.97438 * 23 22 21 25 25 O 1.21278 * 120.00074 * 0.02562 * 23 22 21 26 26 C 1.40665 * 107.83127 * 359.97438 * 11 10 9 27 27 N 1.30901 * 108.39014 * 0.02562 * 26 11 10 28 28 H 0.97004 * 120.00410 * 359.97438 * 1 2 3 29 29 H 1.07996 * 126.25296 * 359.97438 * 10 9 7 30 30 H 0.97008 * 119.99443 * 359.70309 * 12 11 10 31 31 H 1.07997 * 120.04989 * 0.02909 * 16 15 13 32 32 H 1.08001 * 119.84678 * 179.97438 * 17 16 15 33 33 H 1.08005 * 119.80530 * 179.97438 * 18 17 16 34 34 H 1.07997 * 119.96104 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.47381 * 300.00390 * 22 21 20 36 36 H 1.09004 * 109.46908 * 59.99607 * 22 21 20 37 37 H 0.97003 * 119.99819 * 0.02562 * 24 23 22 38 38 H 0.96996 * 120.00003 * 179.97438 * 24 23 22 39 39 H 1.08001 * 125.80441 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.1006 1.6965 -1.2124 5 1 1.2819 2.7464 0.0006 6 1 3.1007 1.6963 1.2125 7 6 2.0078 -1.2037 -0.0005 8 1 3.0878 -1.2038 -0.0001 9 7 1.3212 -2.3929 -0.0005 10 6 1.8749 -3.6405 -0.0005 11 6 0.8576 -4.5385 0.0000 12 7 0.9887 -5.9378 0.0056 13 6 -0.1105 -6.7176 0.0114 14 8 -1.2159 -6.2104 0.0123 15 6 0.0271 -8.1863 0.0166 16 6 1.2950 -8.7732 0.0150 17 6 1.4167 -10.1457 0.0194 18 6 0.2869 -10.9476 0.0248 19 6 -0.9720 -10.3808 0.0254 20 6 -1.1133 -9.0010 0.0273 21 8 -2.3495 -8.4426 0.0340 22 6 -3.4648 -9.3359 0.0454 23 6 -4.7451 -8.5410 0.0522 24 7 -5.9332 -9.1771 0.0627 25 8 -4.7063 -7.3288 0.0473 26 6 -0.3515 -3.8197 0.0010 27 7 -0.0717 -2.5409 0.0004 28 1 -0.4851 0.8400 0.0004 29 1 2.9300 -3.8709 -0.0009 30 1 1.8704 -6.3423 0.0051 31 1 2.1784 -8.1521 0.0104 32 1 2.3972 -10.5984 0.0177 33 1 0.3915 -12.0226 0.0278 34 1 -1.8479 -11.0126 0.0292 35 1 -3.4336 -9.9675 -0.8423 36 1 -3.4207 -9.9607 0.9375 37 1 -5.9643 -10.1467 0.0663 38 1 -6.7573 -8.6655 0.0675 39 1 -1.3422 -4.2497 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139589721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:51 Heat of formation + Delta-G solvation = -17.679754 kcal Electronic energy + Delta-G solvation = -26923.001576 eV Core-core repulsion = 22832.289715 eV Total energy + Delta-G solvation = -4090.711861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.88158 -41.37736 -40.45759 -39.50030 -38.13180 -35.89432 -34.97358 -34.80182 -32.59062 -32.04542 -31.17224 -29.66150 -29.00709 -26.87580 -24.90064 -23.52612 -22.85244 -21.98019 -21.68206 -21.09652 -19.58031 -19.25789 -18.64614 -18.07003 -17.42758 -17.37917 -17.31368 -17.03022 -16.33742 -16.07622 -15.99421 -15.63469 -15.43395 -15.37359 -14.94382 -14.88806 -14.70168 -14.42132 -13.65445 -13.48406 -13.42511 -13.30723 -12.88546 -12.85761 -12.62289 -12.16159 -12.13525 -12.06093 -11.80351 -11.10638 -10.98671 -10.82591 -10.75415 -10.57494 -10.11019 -10.00904 -9.23274 -8.49283 -8.46047 -6.23820 -0.07672 0.45545 1.29097 1.38991 1.51304 1.56699 1.68975 1.75574 1.96134 2.06694 2.32539 2.50333 2.83627 2.93190 2.97392 3.10380 3.73076 3.84406 3.90511 4.03442 4.11799 4.15014 4.31944 4.42376 4.49801 4.56067 4.60712 4.89562 5.00296 5.07746 5.25293 5.29933 5.37738 5.49792 5.52603 5.77869 5.85284 5.96076 6.29083 6.33113 6.50643 6.73228 6.81489 7.31214 7.45629 7.50493 7.68688 8.53449 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.002864 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.630441 B = 9774.185474 C =11613.628479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.010 4.010 3 Si 1.024 2.976 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.354 4.354 8 H 0.144 0.856 9 N -0.167 5.167 10 C -0.081 4.081 11 C -0.040 4.040 12 N -0.616 5.616 13 C 0.529 3.471 14 O -0.558 6.558 15 C -0.192 4.192 16 C -0.051 4.051 17 C -0.159 4.159 18 C -0.043 4.043 19 C -0.216 4.216 20 C 0.157 3.843 21 O -0.304 6.304 22 C 0.028 3.972 23 C 0.505 3.495 24 N -0.824 5.824 25 O -0.583 6.583 26 C -0.065 4.065 27 N -0.310 5.310 28 H 0.276 0.724 29 H 0.193 0.807 30 H 0.416 0.584 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.424 0.576 38 H 0.411 0.589 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 -29.745 0.125 29.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.222 4.222 3 Si 0.842 3.158 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.175 1.175 7 C -0.485 4.485 8 H 0.162 0.838 9 N 0.064 4.936 10 C -0.231 4.231 11 C -0.146 4.146 12 N -0.262 5.262 13 C 0.319 3.681 14 O -0.437 6.437 15 C -0.196 4.196 16 C -0.070 4.070 17 C -0.177 4.177 18 C -0.061 4.061 19 C -0.234 4.234 20 C 0.109 3.891 21 O -0.215 6.215 22 C -0.050 4.050 23 C 0.289 3.711 24 N -0.392 5.392 25 O -0.461 6.461 26 C -0.240 4.240 27 N -0.143 5.143 28 H 0.086 0.914 29 H 0.210 0.790 30 H 0.254 0.746 31 H 0.166 0.834 32 H 0.183 0.817 33 H 0.190 0.810 34 H 0.187 0.813 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.257 0.743 38 H 0.244 0.756 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.522 -27.132 0.120 27.137 hybrid contribution -0.064 -0.145 0.004 0.159 sum -0.586 -27.277 0.125 27.284 Atomic orbital electron populations 1.70429 1.08644 1.29165 1.37304 1.26989 0.96469 1.04613 0.94084 0.84599 0.77455 0.73367 0.80394 1.17495 1.20417 1.17510 1.20646 0.93055 0.80801 1.54014 0.83826 1.44869 1.03513 1.04905 1.40304 1.21988 0.98728 0.84036 1.18396 1.17348 0.92763 0.83728 1.20765 1.42329 1.09457 1.02294 1.72167 1.18814 0.83845 0.87870 0.77580 1.90793 1.27097 1.75507 1.50323 1.19363 0.94327 0.90259 1.15678 1.21462 0.94161 0.97031 0.94307 1.21443 1.01132 0.91962 1.03184 1.21660 0.90573 1.02129 0.91748 1.21596 1.01616 0.90808 1.09366 1.19409 0.83501 0.92765 0.93434 1.86458 1.12376 1.35396 1.87303 1.22883 0.82917 0.92059 1.07150 1.20708 0.87094 0.87768 0.75499 1.43425 1.06503 1.12532 1.76739 1.90913 1.88046 1.17251 1.49934 1.24064 0.98933 0.91148 1.09843 1.78145 0.92185 1.16281 1.27667 0.91449 0.78994 0.74563 0.83378 0.81739 0.80960 0.81275 0.85071 0.85084 0.74333 0.75649 0.82678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.84 11.81 21.66 0.26 -50.58 16 2 C -0.01 -0.57 5.50 84.96 0.47 -0.10 16 3 Si 1.02 40.50 29.55 68.60 2.03 42.53 16 4 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.35 -19.76 10.25 84.02 0.86 -18.90 16 8 H 0.14 6.85 7.83 -2.91 -0.02 6.83 16 9 N -0.17 -9.94 3.74 -189.99 -0.71 -10.65 16 10 C -0.08 -4.08 11.49 83.38 0.96 -3.12 16 11 C -0.04 -2.06 6.90 37.75 0.26 -1.80 16 12 N -0.62 -24.96 5.41 -306.78 -1.66 -26.62 16 13 C 0.53 22.82 7.73 86.69 0.67 23.49 16 14 O -0.56 -30.56 12.31 16.82 0.21 -30.36 16 15 C -0.19 -5.94 5.89 -20.01 -0.12 -6.06 16 16 C -0.05 -1.03 9.54 22.52 0.21 -0.81 16 17 C -0.16 -2.01 10.02 22.24 0.22 -1.79 16 18 C -0.04 -0.45 10.03 22.30 0.22 -0.22 16 19 C -0.22 -3.19 9.03 22.34 0.20 -2.99 16 20 C 0.16 4.30 6.70 22.85 0.15 4.45 16 21 O -0.30 -10.17 7.74 -60.76 -0.47 -10.64 16 22 C 0.03 0.52 5.22 71.24 0.37 0.89 16 23 C 0.51 12.72 8.18 87.66 0.72 13.44 16 24 N -0.82 -9.84 8.87 -173.53 -1.54 -11.38 16 25 O -0.58 -24.77 17.34 16.01 0.28 -24.49 16 26 C -0.07 -4.04 10.85 85.42 0.93 -3.12 16 27 N -0.31 -20.54 10.40 -56.46 -0.59 -21.13 16 28 H 0.28 15.62 8.31 -92.70 -0.77 14.85 16 29 H 0.19 7.46 8.06 -2.91 -0.02 7.44 16 30 H 0.42 12.30 6.86 -92.70 -0.64 11.66 16 31 H 0.15 2.34 6.40 -2.91 -0.02 2.33 16 32 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 34 H 0.17 1.08 6.30 -2.91 -0.02 1.06 16 35 H 0.13 1.30 7.65 -2.39 -0.02 1.28 16 36 H 0.13 1.30 7.68 -2.39 -0.02 1.28 16 37 H 0.42 0.76 8.83 -92.71 -0.82 -0.06 16 38 H 0.41 4.81 8.93 -92.71 -0.83 3.99 16 39 H 0.16 10.20 5.91 -2.91 -0.02 10.18 16 Total: -1.00 -108.00 344.68 2.82 -105.19 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -1.12 Total: 34.78 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 6.13 Total: 3.36 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -4.24 Total: -120.36 kcal Atomic # 8 Polarization: -65.51 SS G_CDS: 0.01 Total: -65.49 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -108.00 2.82 -105.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139589721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.507 kcal (2) G-P(sol) polarization free energy of solvation -108.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds