Wall clock time and date at job start Tue Mar 31 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99890 * 2 1 4 4 C 1.50696 * 109.46934 * 274.99980 * 3 2 1 5 5 H 1.08005 * 120.00231 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00078 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99349 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00299 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46932 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47092 * 120.00095 * 8 6 4 11 11 H 1.48498 * 109.47240 * 240.00394 * 8 6 4 12 12 S 1.65598 * 119.99852 * 179.97438 * 2 1 3 13 13 O 1.42093 * 106.40523 * 336.46286 * 12 2 1 14 14 O 1.42098 * 106.40382 * 203.53736 * 12 2 1 15 15 N 1.65606 * 107.21604 * 90.00176 * 12 2 1 16 16 C 1.47151 * 120.98098 * 90.00000 * 15 12 2 17 17 C 1.53298 * 108.38551 * 129.44862 * 16 15 12 18 18 O 1.42968 * 109.22197 * 52.29985 * 17 16 15 19 19 C 1.42964 * 114.16506 * 297.42214 * 18 17 16 20 20 H 1.09003 * 109.51016 * 302.60164 * 19 18 17 21 21 C 1.50706 * 109.50816 * 182.50209 * 19 18 17 22 22 C 1.34519 * 125.78445 * 145.09963 * 21 19 18 23 23 C 1.41382 * 106.83677 * 179.97438 * 22 21 19 24 24 C 1.34517 * 106.84094 * 0.02562 * 23 22 21 25 25 O 1.34295 * 125.79239 * 324.79248 * 21 19 18 26 26 C 1.47164 * 120.94153 * 269.94776 * 15 12 2 27 27 H 1.08999 * 109.47055 * 269.99859 * 1 2 3 28 28 H 1.08996 * 109.47218 * 30.00400 * 1 2 3 29 29 H 1.09005 * 109.46909 * 149.99672 * 1 2 3 30 30 H 1.08992 * 109.46874 * 34.99876 * 3 2 1 31 31 H 1.09000 * 109.46824 * 154.99986 * 3 2 1 32 32 H 0.96999 * 119.99557 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.68390 * 9.72399 * 16 15 12 34 34 H 1.08998 * 109.71350 * 249.18909 * 16 15 12 35 35 H 1.08995 * 109.51252 * 292.37791 * 17 16 15 36 36 H 1.08996 * 109.55512 * 172.24982 * 17 16 15 37 37 H 1.07994 * 126.57974 * 359.96390 * 22 21 19 38 38 H 1.08000 * 126.57979 * 179.97438 * 23 22 21 39 39 H 1.08008 * 125.78731 * 180.02562 * 24 23 22 40 40 H 1.08995 * 109.64603 * 110.80762 * 26 15 12 41 41 H 1.08997 * 109.73101 * 350.24509 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9282 1.1938 -2.2332 6 6 2.9997 2.9509 -1.6664 7 7 3.5024 3.6474 -0.6705 8 14 3.1787 3.5665 -3.4209 9 1 2.5312 2.6066 -4.3507 10 1 2.5270 4.8947 -3.5484 11 1 4.6198 3.6878 -3.7583 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4063 0.5454 14 8 3.5760 -1.1566 0.5449 15 7 2.5381 -1.8593 -1.5810 16 6 3.7428 -1.4230 -2.3047 17 6 4.3803 -2.6501 -2.9664 18 8 3.3909 -3.3370 -3.7365 19 6 2.3018 -3.8505 -2.9658 20 1 2.6845 -4.5223 -2.1974 21 6 1.3577 -4.6031 -3.8677 22 6 0.6610 -5.7043 -3.5339 23 6 -0.0914 -6.0737 -4.6724 24 6 0.1910 -5.1765 -5.6341 25 8 1.0648 -4.2848 -5.1391 26 6 1.5575 -2.6856 -2.3031 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6501 2.0042 0.5894 31 1 3.1858 1.1177 0.4343 32 1 3.9659 4.4810 -0.8471 33 1 4.4488 -0.9745 -1.6057 34 1 3.4695 -0.6948 -3.0682 35 1 4.7706 -3.3168 -2.1974 36 1 5.1932 -2.3317 -3.6189 37 1 0.6740 -6.2094 -2.5794 38 1 -0.7633 -6.9153 -4.7547 39 1 -0.2195 -5.1710 -6.6331 40 1 1.0629 -2.0846 -3.0661 41 1 0.8171 -3.0736 -1.6036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150845897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:31 Heat of formation + Delta-G solvation = -88.436413 kcal Electronic energy + Delta-G solvation = -27721.857195 eV Core-core repulsion = 23731.228295 eV Total energy + Delta-G solvation = -3990.628900 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.67069 -39.22672 -36.83179 -35.53889 -35.33438 -34.66117 -33.29190 -32.53043 -32.31273 -29.08003 -27.83555 -26.60970 -25.11840 -24.30323 -22.35639 -22.01467 -21.51557 -20.43309 -18.61524 -17.81803 -17.30514 -16.86814 -16.57191 -16.43270 -15.98798 -15.67636 -15.29750 -14.99192 -14.88788 -14.33673 -14.06439 -13.68601 -13.42550 -13.29451 -12.92086 -12.77446 -12.45745 -12.40172 -12.21599 -12.00595 -11.85173 -11.80382 -11.65095 -11.24000 -11.19508 -11.18182 -10.83858 -10.67877 -10.53755 -10.19820 -10.10923 -10.03001 -9.80830 -8.90136 -8.55171 -8.46751 -8.08076 -6.15433 -4.22448 1.09478 1.59570 2.46539 2.86323 3.21591 3.28658 3.30999 3.35395 3.55942 3.99104 4.33072 4.54514 4.68040 4.79141 4.91112 4.94379 4.96125 5.10759 5.18831 5.28948 5.34195 5.51586 5.53889 5.62677 5.66591 5.74205 5.81194 5.92465 6.02861 6.15139 6.25234 6.27387 6.33707 6.47135 6.69520 6.93495 7.13709 7.27921 7.37649 7.56805 7.81404 8.10228 8.83209 9.44230 10.92527 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.013311 B = 0.004571 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.968725 B = 6124.247253 C = 6992.322565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.995 5.995 3 C 0.243 3.757 4 C -0.540 4.540 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.786 3.214 13 O -0.996 6.996 14 O -0.973 6.973 15 N -1.006 6.006 16 C 0.089 3.911 17 C 0.051 3.949 18 O -0.370 6.370 19 C 0.164 3.836 20 H 0.093 0.907 21 C 0.002 3.998 22 C -0.200 4.200 23 C -0.216 4.216 24 C -0.039 4.039 25 O -0.159 6.159 26 C 0.097 3.903 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.264 0.736 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.202 0.798 40 H 0.079 0.921 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -15.617 -6.518 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.837 5.837 3 C 0.121 3.879 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 S 2.795 3.205 13 O -0.980 6.980 14 O -0.957 6.957 15 N -0.844 5.844 16 C -0.037 4.037 17 C -0.027 4.027 18 O -0.288 6.288 19 C 0.104 3.896 20 H 0.110 0.890 21 C -0.050 4.050 22 C -0.219 4.219 23 C -0.235 4.235 24 C -0.107 4.107 25 O -0.054 6.054 26 C -0.030 4.030 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.219 0.781 40 H 0.098 0.902 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.214 -15.662 -6.020 17.300 hybrid contribution -0.250 0.644 -1.094 1.294 sum -4.464 -15.017 -7.114 17.206 Atomic orbital electron populations 1.21230 0.80021 1.02117 1.00685 1.57649 1.14281 1.23451 1.88331 1.19247 0.92156 0.78824 0.97656 1.21581 1.36588 1.06882 0.92880 0.91861 1.24953 0.95167 0.96466 0.97230 1.69945 1.36736 1.15147 1.30878 0.86533 0.77982 0.78857 0.84620 1.19634 1.20949 1.20770 1.01794 0.73208 0.72744 0.72713 1.93527 1.67344 1.60473 1.76685 1.93571 1.40740 1.85255 1.76111 1.58348 1.29470 1.64655 1.31918 1.22108 0.86566 0.96652 0.98358 1.23069 0.90429 0.93256 0.95938 1.88005 1.33004 1.73761 1.34051 1.20741 0.85570 0.93524 0.89777 0.88982 1.21952 1.01442 0.97691 0.83897 1.21561 1.01426 0.97913 1.01043 1.21797 1.05114 1.02991 0.93576 1.24118 0.95354 0.91003 1.00264 1.84107 1.49818 1.46344 1.25126 1.21988 0.91342 0.91878 0.97787 0.93622 0.90709 0.93019 0.94363 0.93110 0.92598 0.87245 0.89741 0.92498 0.87213 0.83099 0.83327 0.78097 0.90245 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.82 10.31 59.85 0.62 2.43 16 2 N -0.99 -20.42 3.23 -123.05 -0.40 -20.81 16 3 C 0.24 5.95 5.41 -5.20 -0.03 5.92 16 4 C -0.54 -13.81 9.38 -34.44 -0.32 -14.13 16 5 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 6 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 8 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 S 2.79 54.49 6.12 -107.50 -0.66 53.84 16 13 O -1.00 -19.67 15.83 -57.17 -0.91 -20.58 16 14 O -0.97 -21.74 15.31 -57.17 -0.88 -22.62 16 15 N -1.01 -16.91 3.40 -113.05 -0.38 -17.30 16 16 C 0.09 1.43 6.71 -3.53 -0.02 1.41 16 17 C 0.05 0.67 6.99 37.31 0.26 0.94 16 18 O -0.37 -5.42 10.35 -39.79 -0.41 -5.84 16 19 C 0.16 2.22 3.24 -27.73 -0.09 2.13 16 20 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 21 C 0.00 0.02 6.22 -35.62 -0.22 -0.20 16 22 C -0.20 -2.25 10.81 -39.70 -0.43 -2.68 16 23 C -0.22 -2.13 10.91 -39.70 -0.43 -2.56 16 24 C -0.04 -0.39 12.09 29.42 0.36 -0.04 16 25 O -0.16 -2.14 10.63 1.18 0.01 -2.13 16 26 C 0.10 1.41 5.98 -3.53 -0.02 1.39 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 29 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 30 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 31 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.11 1.87 6.95 -51.93 -0.36 1.51 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.20 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 41 H 0.10 1.41 6.94 -51.93 -0.36 1.05 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -32.40 356.44 -8.64 -41.04 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.67 Total: 1.65 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -0.43 Total: -3.78 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.04 Total: -62.30 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -2.18 Total: -51.16 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 54.49 SS G_CDS: -0.66 Total: 53.84 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.40 -8.64 -41.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150845897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.393 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds