Wall clock time and date at job start Tue Mar 31 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00487 * 2 1 4 4 H 1.48498 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47081 * 300.00093 * 3 2 1 6 6 H 1.48502 * 109.47072 * 60.00292 * 3 2 1 7 7 C 1.37883 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00233 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99622 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47044 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47315 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54513 * 68.37479 * 11 10 9 13 13 O 1.42104 * 110.54153 * 291.62648 * 11 10 9 14 14 N 1.65602 * 104.45258 * 180.02562 * 11 10 9 15 15 C 1.46922 * 120.62841 * 89.99906 * 14 11 10 16 16 C 1.53201 * 108.77453 * 233.63136 * 15 14 11 17 17 C 1.53037 * 109.31105 * 305.36887 * 16 15 14 18 18 C 1.53033 * 109.54055 * 61.36473 * 17 16 15 19 19 H 1.08996 * 109.49923 * 58.61517 * 18 17 16 20 20 C 1.50706 * 109.49856 * 178.68515 * 18 17 16 21 21 N 1.30721 * 125.54158 * 94.69350 * 20 18 17 22 22 C 1.34452 * 109.94712 * 179.89265 * 21 20 18 23 23 O 1.21722 * 125.92390 * 180.15582 * 22 21 20 24 24 N 1.34994 * 108.14516 * 0.36598 * 22 21 20 25 25 H 0.97004 * 126.85440 * 179.74357 * 24 22 21 26 26 N 1.35152 * 125.53318 * 274.99882 * 20 18 17 27 27 H 0.96999 * 126.65338 * 359.92722 * 26 20 18 28 28 C 1.46925 * 120.62953 * 270.02539 * 14 11 10 29 29 H 0.97003 * 119.99493 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47551 * 60.00096 * 9 7 2 31 31 H 1.09001 * 109.47218 * 299.99613 * 9 7 2 32 32 H 1.09006 * 109.47084 * 59.99946 * 10 9 7 33 33 H 1.08999 * 109.47400 * 300.00055 * 10 9 7 34 34 H 1.09002 * 109.58914 * 113.84716 * 15 14 11 35 35 H 1.08994 * 109.70799 * 353.48918 * 15 14 11 36 36 H 1.09000 * 109.49793 * 185.41587 * 16 15 14 37 37 H 1.09000 * 109.49336 * 65.31969 * 16 15 14 38 38 H 1.08999 * 109.46134 * 301.34032 * 17 16 15 39 39 H 1.09003 * 109.45797 * 181.39003 * 17 16 15 40 40 H 1.09000 * 109.58795 * 6.58039 * 28 14 11 41 41 H 1.09003 * 109.58476 * 246.15469 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2450 -3.6621 -0.0027 11 16 1.3380 -5.2330 -0.0034 12 8 0.6635 -5.4190 -1.2402 13 8 0.6644 -5.4204 1.2337 14 7 2.5200 -6.3928 -0.0038 15 6 3.0543 -6.9175 1.2603 16 6 4.5799 -6.7781 1.2465 17 6 5.1392 -7.4606 -0.0038 18 6 4.5803 -6.7768 -1.2536 19 1 4.8494 -5.7206 -1.2415 20 6 5.1567 -7.4287 -2.4841 21 7 4.5942 -8.3894 -3.1692 22 6 5.3783 -8.7333 -4.2059 23 8 5.1337 -9.5933 -5.0319 24 7 6.4859 -7.9626 -4.1690 25 1 7.2325 -7.9869 -4.7879 26 7 6.3419 -7.1191 -3.0550 27 1 6.9709 -6.4447 -2.7542 28 6 3.0548 -6.9162 -1.2682 29 1 -0.4849 0.8401 -0.0004 30 1 0.6246 -2.5563 -0.8919 31 1 0.6239 -2.5575 0.8880 32 1 2.8717 -3.6052 0.8873 33 1 2.8717 -3.6036 -0.8926 34 1 2.7844 -7.9686 1.3629 35 1 2.6432 -6.3515 2.0962 36 1 4.9965 -7.2505 2.1361 37 1 4.8485 -5.7218 1.2353 38 1 4.8492 -8.5114 -0.0045 39 1 6.2265 -7.3843 -0.0036 40 1 2.6438 -6.3472 -2.1022 41 1 2.7849 -7.9672 -1.3719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288909982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:01 Heat of formation + Delta-G solvation = -24.453944 kcal Electronic energy + Delta-G solvation = -26642.816870 eV Core-core repulsion = 22687.255209 eV Total energy + Delta-G solvation = -3955.561661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.67052 -38.97021 -37.40958 -36.71376 -35.48564 -34.00211 -33.92789 -32.78654 -31.81057 -31.21285 -30.47817 -25.68927 -25.04844 -24.54396 -22.36062 -21.99766 -21.62094 -20.57779 -19.42804 -18.59188 -17.66321 -16.99516 -16.59338 -16.56166 -16.01894 -15.71756 -15.55332 -14.95855 -14.84260 -14.62827 -14.59300 -14.26626 -13.72137 -13.44019 -12.96249 -12.93723 -12.58869 -11.99136 -11.85977 -11.80466 -11.68871 -11.62454 -11.41234 -11.35923 -11.20883 -11.14712 -11.01466 -10.92716 -10.61430 -10.44709 -10.43247 -10.23019 -9.82706 -9.38684 -9.04586 -8.87496 -8.55795 -6.17450 -4.23382 0.66631 0.98449 1.11869 2.87931 3.15202 3.20527 3.27539 3.27980 3.30236 3.88105 4.18288 4.27403 4.29531 4.34716 4.52854 4.57984 4.72483 4.90085 4.93194 4.98940 5.17808 5.18252 5.29184 5.47697 5.52831 5.55198 5.58445 5.60454 5.67684 5.75916 5.84522 5.98954 6.04360 6.41944 6.53983 6.76841 7.25312 7.31166 7.60676 7.74955 7.93635 8.11880 8.80138 9.41609 10.93542 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.003321 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.382358 B = 8428.297066 C = 9272.969560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.590 4.590 11 S 2.588 3.412 12 O -0.959 6.959 13 O -0.960 6.960 14 N -1.005 6.005 15 C 0.117 3.883 16 C -0.135 4.135 17 C -0.107 4.107 18 C -0.042 4.042 19 H 0.112 0.888 20 C 0.414 3.586 21 N -0.564 5.564 22 C 0.638 3.362 23 O -0.535 6.535 24 N -0.544 5.544 25 H 0.442 0.558 26 N -0.496 5.496 27 H 0.449 0.551 28 C 0.137 3.863 29 H 0.265 0.735 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.368 -12.988 0.929 21.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.687 3.313 12 O -0.949 6.949 13 O -0.951 6.951 14 N -0.841 5.841 15 C -0.009 4.009 16 C -0.174 4.174 17 C -0.146 4.146 18 C -0.065 4.065 19 H 0.130 0.870 20 C 0.139 3.861 21 N -0.314 5.314 22 C 0.336 3.664 23 O -0.405 6.405 24 N -0.304 5.304 25 H 0.291 0.709 26 N -0.228 5.228 27 H 0.297 0.703 28 C 0.010 3.990 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.422 -14.211 0.279 20.973 hybrid contribution 2.734 2.071 -0.485 3.464 sum 18.156 -12.140 -0.206 21.842 Atomic orbital electron populations 1.69961 1.06112 1.27133 1.49451 1.25074 0.94962 0.99540 0.94923 0.86432 0.79829 0.83281 0.77817 1.19722 1.20811 1.20777 1.21013 0.92997 0.89741 1.52221 0.92054 1.18971 0.92739 0.90564 0.98937 1.30516 1.13704 1.18259 1.09834 1.05868 0.74941 0.76308 0.74225 1.93560 1.71027 1.85090 1.45239 1.93544 1.71058 1.85163 1.45317 1.58076 1.58756 1.56382 1.10843 1.21434 0.93107 1.00865 0.85456 1.21962 0.96019 1.01917 0.97467 1.21543 1.00016 1.00778 0.92232 1.20643 0.98034 1.00272 0.87514 0.86988 1.23900 0.80654 0.89080 0.92469 1.71870 1.30784 1.18300 1.10439 1.18369 0.79206 0.82689 0.86144 1.91012 1.74755 1.33348 1.41424 1.47084 1.25735 1.34869 1.22672 0.70937 1.44851 1.21817 1.34935 1.21244 0.70321 1.21218 0.88974 1.02907 0.85852 0.92529 0.94842 0.94819 0.86231 0.86423 0.90865 0.88567 0.89886 0.90644 0.90181 0.91233 0.88155 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.67 9.11 -34.44 -0.31 -13.98 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.65 4.98 -27.89 -0.14 0.51 16 10 C -0.59 -10.10 6.12 37.16 0.23 -9.88 16 11 S 2.59 42.98 5.41 -107.50 -0.58 42.40 16 12 O -0.96 -19.04 16.73 -57.54 -0.96 -20.00 16 13 O -0.96 -18.59 16.72 -57.54 -0.96 -19.55 16 14 N -1.01 -11.60 3.22 -113.52 -0.37 -11.96 16 15 C 0.12 1.04 6.31 -3.71 -0.02 1.01 16 16 C -0.13 -0.76 6.08 -26.61 -0.16 -0.93 16 17 C -0.11 -0.55 5.15 -26.70 -0.14 -0.69 16 18 C -0.04 -0.28 2.81 -91.65 -0.26 -0.54 16 19 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 20 C 0.41 3.36 7.05 -155.13 -1.09 2.27 16 21 N -0.56 -7.07 10.49 -13.83 -0.14 -7.21 16 22 C 0.64 8.55 9.35 -87.01 -0.81 7.74 16 23 O -0.53 -9.42 18.06 5.17 0.09 -9.32 16 24 N -0.54 -4.20 7.48 27.64 0.21 -3.99 16 25 H 0.44 2.05 8.96 -182.31 -1.63 0.41 16 26 N -0.50 -2.58 7.46 32.73 0.24 -2.34 16 27 H 0.45 0.46 8.96 -182.31 -1.63 -1.17 16 28 C 0.14 1.43 5.33 -3.71 -0.02 1.41 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.12 1.76 8.14 -51.92 -0.42 1.34 16 33 H 0.12 1.74 8.14 -51.92 -0.42 1.31 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.92 7.10 -51.93 -0.37 0.55 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 1.16 7.10 -51.93 -0.37 0.80 16 41 H 0.09 1.03 7.85 -51.93 -0.41 0.62 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -40.18 354.89 -12.42 -52.60 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -8.18 Total: -4.75 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -2.83 Total: -11.59 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.68 Total: -50.49 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -1.83 Total: -48.87 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 42.98 SS G_CDS: -0.58 Total: 42.40 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -40.18 -12.42 -52.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288909982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.149 kcal (2) G-P(sol) polarization free energy of solvation -40.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds