Wall clock time and date at job start Tue Mar 31 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00118 * 2 1 4 4 H 1.48493 * 109.47448 * 240.00381 * 3 2 1 5 5 H 1.48503 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46990 * 120.00098 * 3 2 1 7 7 C 1.37873 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47338 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.47333 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54525 * 68.37244 * 11 10 9 13 13 O 1.42104 * 110.53967 * 291.62376 * 11 10 9 14 14 N 1.65601 * 104.45240 * 180.02562 * 11 10 9 15 15 C 1.46919 * 120.63434 * 89.99545 * 14 11 10 16 16 C 1.53195 * 108.89273 * 126.34385 * 15 14 11 17 17 C 1.53346 * 109.14901 * 54.57640 * 16 15 14 18 18 C 1.53034 * 109.61010 * 298.71225 * 17 16 15 19 19 H 1.08994 * 109.50232 * 301.42239 * 18 17 16 20 20 C 1.50700 * 109.52573 * 181.34079 * 18 17 16 21 21 N 1.30738 * 125.54101 * 265.17309 * 20 18 17 22 22 C 1.34444 * 109.94794 * 179.97438 * 21 20 18 23 23 O 1.21724 * 125.92588 * 180.02562 * 22 21 20 24 24 N 1.34995 * 108.14736 * 359.97438 * 22 21 20 25 25 H 0.97003 * 126.85962 * 180.02562 * 24 22 21 26 26 N 1.35149 * 125.54075 * 84.86400 * 20 18 17 27 27 H 0.97005 * 126.65002 * 0.03887 * 26 20 18 28 28 C 1.46933 * 120.62562 * 270.01620 * 14 11 10 29 29 H 0.97000 * 119.99794 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.46673 * 60.00159 * 9 7 2 31 31 H 1.08994 * 109.47056 * 300.00237 * 9 7 2 32 32 H 1.09001 * 109.47261 * 59.99997 * 10 9 7 33 33 H 1.09010 * 109.47002 * 300.00304 * 10 9 7 34 34 H 1.09002 * 109.58751 * 246.20335 * 15 14 11 35 35 H 1.08996 * 109.58750 * 6.48520 * 15 14 11 36 36 H 1.08997 * 109.49914 * 174.65962 * 16 15 14 37 37 H 1.09002 * 109.49585 * 294.75599 * 16 15 14 38 38 H 1.08999 * 109.41979 * 178.67448 * 17 16 15 39 39 H 1.09001 * 109.42242 * 58.75065 * 17 16 15 40 40 H 1.08994 * 109.58580 * 353.37875 * 28 14 11 41 41 H 1.09002 * 109.58042 * 113.79954 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 8 0.6647 -5.4194 -1.2385 13 8 0.6640 -5.4200 1.2355 14 7 2.5206 -6.3927 -0.0005 15 6 3.0541 -6.9170 1.2640 16 6 2.9446 -8.4450 1.2530 17 6 3.6401 -8.9901 -0.0002 18 6 2.9469 -8.4445 -1.2507 19 1 1.8962 -8.7340 -1.2399 20 6 3.6110 -9.0073 -2.4809 21 7 4.5595 -8.4245 -3.1664 22 6 4.9221 -9.2028 -4.2010 23 8 5.7793 -8.9419 -5.0249 24 7 4.1714 -10.3242 -4.1669 25 1 4.2098 -11.0693 -4.7869 26 7 3.3270 -10.1991 -3.0513 27 1 2.6666 -10.8426 -2.7499 28 6 3.0561 -6.9165 -1.2645 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8896 32 1 2.8720 -3.6043 0.8894 33 1 2.8720 -3.6043 -0.8906 34 1 4.0995 -6.6263 1.3680 35 1 2.4786 -6.5154 2.0979 36 1 3.4234 -8.8504 2.1443 37 1 1.8938 -8.7343 1.2403 38 1 3.5853 -10.0787 -0.0005 39 1 4.6848 -8.6791 0.0007 40 1 2.4802 -6.5165 -2.0990 41 1 4.1016 -6.6258 -1.3667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288909985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:05 Heat of formation + Delta-G solvation = -23.790655 kcal Electronic energy + Delta-G solvation = -26440.366048 eV Core-core repulsion = 22484.833149 eV Total energy + Delta-G solvation = -3955.532898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.67608 -38.94075 -37.41189 -36.72387 -35.49288 -33.99188 -33.87210 -32.80033 -31.79800 -31.14222 -30.47727 -25.61805 -25.03530 -24.54622 -22.36578 -21.93933 -21.52484 -20.74109 -19.45830 -18.49515 -17.65898 -17.00900 -16.59245 -16.55055 -15.99499 -15.71972 -15.51030 -14.91704 -14.80755 -14.68778 -14.50119 -14.20638 -13.79563 -13.38338 -12.97272 -12.93906 -12.49439 -11.99857 -11.87052 -11.75350 -11.74066 -11.63650 -11.39161 -11.35777 -11.15557 -11.04429 -10.96306 -10.90423 -10.59931 -10.42218 -10.36098 -10.23459 -9.75403 -9.35751 -9.05518 -8.85893 -8.48292 -6.10839 -4.16289 0.67596 0.98227 1.11213 2.89294 3.14859 3.26966 3.29916 3.34495 3.36682 3.88104 4.18109 4.26443 4.33135 4.40523 4.51947 4.60145 4.74129 4.91419 4.95625 5.00297 5.19603 5.24506 5.28365 5.50363 5.53250 5.57033 5.61959 5.65543 5.74768 5.75575 5.81197 5.98410 6.05435 6.50644 6.55291 6.75609 7.30613 7.36563 7.59983 7.82458 7.93114 8.19131 8.87067 9.48628 11.00158 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.003017 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.194362 B = 9277.784429 C =10305.474977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.587 4.587 11 S 2.589 3.411 12 O -0.963 6.963 13 O -0.963 6.963 14 N -1.007 6.007 15 C 0.112 3.888 16 C -0.128 4.128 17 C -0.108 4.108 18 C -0.035 4.035 19 H 0.110 0.890 20 C 0.415 3.585 21 N -0.564 5.564 22 C 0.638 3.362 23 O -0.534 6.534 24 N -0.544 5.544 25 H 0.442 0.558 26 N -0.497 5.497 27 H 0.448 0.552 28 C 0.132 3.868 29 H 0.265 0.735 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.431 -25.170 0.923 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.721 4.721 11 S 2.688 3.312 12 O -0.954 6.954 13 O -0.953 6.953 14 N -0.842 5.842 15 C -0.013 4.013 16 C -0.167 4.167 17 C -0.147 4.147 18 C -0.058 4.058 19 H 0.128 0.872 20 C 0.140 3.860 21 N -0.314 5.314 22 C 0.336 3.664 23 O -0.404 6.404 24 N -0.304 5.304 25 H 0.290 0.710 26 N -0.229 5.229 27 H 0.296 0.704 28 C 0.006 3.994 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.414 -24.412 0.271 25.007 hybrid contribution 0.328 -0.417 -0.487 0.720 sum 5.741 -24.829 -0.216 25.485 Atomic orbital electron populations 1.69942 1.06124 1.27306 1.49583 1.25061 0.94970 0.99538 0.94874 0.86528 0.79498 0.82482 0.78769 1.20009 1.21113 1.20069 1.20978 0.93099 0.89752 1.52179 0.92007 1.18962 0.92700 0.90623 0.98811 1.30477 1.13642 1.17674 1.10320 1.05771 0.74773 0.76541 0.74086 1.93532 1.71279 1.85240 1.45317 1.93530 1.71176 1.85253 1.45357 1.58026 1.59219 1.56146 1.10832 1.21478 1.00158 0.93969 0.85712 1.21910 1.01674 0.95873 0.97260 1.21620 1.00693 1.00071 0.92337 1.20515 0.99916 0.97979 0.87372 0.87192 1.23923 0.89144 0.80466 0.92478 1.71872 1.18233 1.30744 1.10519 1.18370 0.82737 0.79160 0.86132 1.91017 1.33294 1.74611 1.41504 1.47085 1.35694 1.25132 1.22510 0.70962 1.44836 1.35857 1.21082 1.21164 0.70409 1.21263 1.02149 0.89854 0.86174 0.92490 0.94866 0.94904 0.86121 0.85991 0.91025 0.88298 0.89925 0.90886 0.91318 0.90102 0.87861 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.59 -10.87 6.11 37.16 0.23 -10.64 16 11 S 2.59 42.90 5.45 -107.50 -0.59 42.31 16 12 O -0.96 -18.46 16.59 -57.54 -0.95 -19.41 16 13 O -0.96 -18.16 16.59 -57.54 -0.95 -19.11 16 14 N -1.01 -11.62 3.22 -113.52 -0.37 -11.98 16 15 C 0.11 1.00 6.42 -3.71 -0.02 0.98 16 16 C -0.13 -0.79 6.11 -26.45 -0.16 -0.95 16 17 C -0.11 -0.58 5.15 -26.53 -0.14 -0.72 16 18 C -0.03 -0.25 2.81 -91.66 -0.26 -0.51 16 19 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 20 C 0.42 3.41 7.05 -155.12 -1.09 2.32 16 21 N -0.56 -7.07 10.49 -13.83 -0.14 -7.22 16 22 C 0.64 8.54 9.35 -87.02 -0.81 7.73 16 23 O -0.53 -9.41 18.06 5.17 0.09 -9.32 16 24 N -0.54 -4.14 7.48 27.63 0.21 -3.94 16 25 H 0.44 1.97 8.96 -182.31 -1.63 0.33 16 26 N -0.50 -2.55 7.46 32.73 0.24 -2.31 16 27 H 0.45 0.37 8.96 -182.31 -1.63 -1.27 16 28 C 0.13 1.38 5.44 -3.71 -0.02 1.36 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 33 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.97 6.86 -51.93 -0.36 0.61 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 1.23 6.86 -51.93 -0.36 0.87 16 41 H 0.09 0.94 7.85 -51.93 -0.41 0.53 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -40.23 354.43 -12.39 -52.62 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -8.16 Total: -4.58 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.83 Total: -12.96 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.68 Total: -51.10 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -1.82 Total: -47.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 42.90 SS G_CDS: -0.59 Total: 42.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -40.23 -12.39 -52.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288909985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.832 kcal (2) G-P(sol) polarization free energy of solvation -40.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds