Wall clock time and date at job start Tue Mar 31 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35668 * 117.00083 * 2 1 4 4 C 1.38798 * 119.65150 * 180.02562 * 3 2 1 5 5 C 1.38537 * 119.23470 * 179.97438 * 4 3 2 6 6 C 1.38573 * 118.55082 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.38141 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.47254 * 260.00035 * 7 6 5 9 9 S 1.65597 * 119.99942 * 165.00168 * 8 7 6 10 10 O 1.42101 * 104.27431 * 181.07413 * 9 8 7 11 11 O 1.42102 * 104.27493 * 308.92757 * 9 8 7 12 12 C 1.81389 * 104.45097 * 65.00174 * 9 8 7 13 13 C 1.53001 * 109.47229 * 180.02562 * 12 9 8 14 14 C 1.50702 * 109.47226 * 179.97438 * 13 12 9 15 15 H 1.08005 * 119.99819 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00147 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99950 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99887 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46984 * 90.00248 * 18 16 14 20 20 H 1.48496 * 109.47209 * 210.00312 * 18 16 14 21 21 H 1.48502 * 109.47208 * 330.00527 * 18 16 14 22 22 C 1.38759 * 119.23675 * 359.97438 * 6 5 4 23 23 O 1.35673 * 119.64898 * 180.02562 * 22 6 5 24 24 C 1.42902 * 116.99979 * 179.97438 * 23 22 6 25 25 N 1.32324 * 119.64607 * 0.02562 * 3 2 1 26 26 H 1.08990 * 109.47450 * 60.00139 * 1 2 3 27 27 H 1.09003 * 109.46785 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47203 * 299.99525 * 1 2 3 29 29 H 1.07995 * 120.37927 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.72351 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.46916 * 20.00097 * 7 6 5 32 32 H 1.09003 * 109.46710 * 140.00467 * 7 6 5 33 33 H 0.97005 * 119.99302 * 345.00426 * 8 7 6 34 34 H 1.09001 * 109.47252 * 300.00111 * 12 9 8 35 35 H 1.09001 * 109.47489 * 59.99489 * 12 9 8 36 36 H 1.09003 * 109.47227 * 299.99667 * 13 12 9 37 37 H 1.08997 * 109.46860 * 59.99856 * 13 12 9 38 38 H 0.97006 * 119.99875 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.47120 * 299.99933 * 24 23 22 40 40 H 1.08998 * 109.46978 * 60.00666 * 24 23 22 41 41 H 1.09007 * 109.47007 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4315 1.2730 -0.0005 5 6 4.0514 2.5119 -0.0011 6 6 3.2593 3.6489 -0.0005 7 6 3.8903 5.0174 -0.0005 8 7 3.8775 5.5611 1.3599 9 16 4.8218 6.8678 1.7382 10 8 4.5738 7.0911 3.1195 11 8 6.1167 6.5103 1.2749 12 6 4.1406 8.2221 0.7421 13 6 4.9384 9.5006 1.0060 14 6 4.3729 10.6256 0.1779 15 1 3.5291 10.4464 -0.4720 16 6 4.9334 11.8833 0.2491 17 7 4.4395 12.8651 -0.4732 18 14 6.3933 12.1930 1.3725 19 1 7.6532 11.9451 0.6266 20 1 6.3656 13.6011 1.8434 21 1 6.3216 11.2789 2.5407 22 6 1.8784 3.5128 0.0000 23 8 1.0948 4.6204 0.0001 24 6 -0.3193 4.4147 0.0001 25 7 1.3175 2.3141 0.0005 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.0201 0.3676 -0.0005 30 1 5.1287 2.5899 -0.0019 31 1 4.9192 4.9431 -0.3524 32 1 3.3271 5.6771 -0.6606 33 1 3.3160 5.1555 2.0390 34 1 4.2069 7.9645 -0.3150 35 1 3.0968 8.3824 1.0121 36 1 4.8725 9.7584 2.0630 37 1 5.9820 9.3399 0.7356 38 1 4.8336 13.7501 -0.4228 39 1 -0.6049 3.8539 -0.8899 40 1 -0.6049 3.8540 0.8901 41 1 -0.8268 5.3794 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289699245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:14 Heat of formation + Delta-G solvation = -110.939646 kcal Electronic energy + Delta-G solvation = -26001.488187 eV Core-core repulsion = 22009.883474 eV Total energy + Delta-G solvation = -3991.604713 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31698 -39.27200 -37.59675 -36.68144 -35.60998 -35.38445 -33.91766 -32.49191 -31.45379 -30.82907 -28.20662 -27.27528 -25.93613 -25.48457 -23.31418 -22.40157 -21.26752 -19.23765 -19.00725 -18.25594 -17.64361 -17.04620 -16.74573 -16.43549 -16.28683 -15.83040 -15.52657 -15.33453 -15.08069 -14.57590 -14.31186 -14.14648 -13.78940 -13.59703 -13.46682 -13.20061 -12.78159 -12.67724 -12.34385 -12.04453 -11.90158 -11.85397 -11.69341 -11.59762 -11.53017 -11.22398 -11.15490 -10.98897 -10.42845 -10.24232 -10.14741 -10.08445 -9.78235 -9.46256 -9.11690 -8.64303 -8.46055 -6.14590 -4.15517 0.60883 0.90591 0.93746 2.61921 2.79830 3.05607 3.28244 3.35563 3.40045 3.44383 3.86362 4.16603 4.37799 4.43653 4.55061 4.68018 4.78341 4.89360 4.89928 4.94720 5.01538 5.03211 5.17413 5.20077 5.28396 5.32840 5.37675 5.56648 5.57348 5.63134 5.90133 5.95024 6.00711 6.32804 6.49916 6.85462 6.95812 7.01664 7.07859 7.37131 7.57317 8.38964 8.87014 9.45282 10.97822 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.002758 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.893591 B =10149.719542 C =10830.161817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.305 6.305 3 C 0.361 3.639 4 C -0.229 4.229 5 C 0.009 3.991 6 C -0.202 4.202 7 C 0.175 3.825 8 N -1.120 6.120 9 S 2.591 3.409 10 O -0.968 6.968 11 O -0.967 6.967 12 C -0.582 4.582 13 C -0.008 4.008 14 C -0.518 4.518 15 H 0.078 0.922 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.869 3.131 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.262 1.262 22 C 0.375 3.625 23 O -0.293 6.293 24 C 0.039 3.961 25 N -0.596 5.596 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.413 0.587 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.032 0.968 37 H 0.028 0.972 38 H 0.266 0.734 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 -25.823 -0.468 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.183 3.817 4 C -0.250 4.250 5 C -0.016 4.016 6 C -0.207 4.207 7 C 0.049 3.951 8 N -0.877 5.877 9 S 2.689 3.311 10 O -0.958 6.958 11 O -0.957 6.957 12 C -0.715 4.715 13 C -0.047 4.047 14 C -0.557 4.557 15 H 0.096 0.904 16 C -0.132 4.132 17 N -0.534 5.534 18 Si 0.696 3.304 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.186 1.186 22 C 0.196 3.804 23 O -0.199 6.199 24 C -0.056 4.056 25 N -0.335 5.335 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.246 0.754 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.172 -25.632 -0.038 26.904 hybrid contribution 0.163 0.288 0.281 0.434 sum -8.009 -25.345 0.243 26.581 Atomic orbital electron populations 1.22872 0.77097 1.03081 1.02478 1.86269 1.23046 1.24371 1.87464 1.19439 0.89141 0.83347 0.89780 1.20921 0.91535 0.99698 1.12816 1.21284 1.00801 0.89704 0.89831 1.19687 0.90307 0.97099 1.13583 1.19875 1.01193 0.90502 0.83579 1.55767 1.64401 1.49346 1.18222 1.05541 0.74683 0.75448 0.75461 1.93558 1.85673 1.85472 1.31096 1.93539 1.37549 1.81754 1.82879 1.30284 1.12331 1.14640 1.14278 1.19412 0.95079 0.91429 0.98762 1.20861 1.17310 0.92118 1.25414 0.90395 1.24990 0.96932 0.95969 0.95280 1.69884 1.41470 1.01786 1.40308 0.86922 0.83403 0.78062 0.82039 1.19681 1.20820 1.18600 1.19234 0.88236 0.83817 0.89127 1.86359 1.19621 1.27017 1.86864 1.22918 0.77277 1.03273 1.02168 1.66832 1.41456 0.98424 1.26784 0.92266 0.88501 0.92262 0.83658 0.82782 0.89149 0.90269 0.75424 0.85672 0.85409 0.94966 0.95358 0.92419 0.92367 0.92340 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.38 101.05 1.05 1.30 16 2 O -0.31 -2.82 10.47 -18.71 -0.20 -3.01 16 3 C 0.36 3.67 7.48 -17.13 -0.13 3.54 16 4 C -0.23 -2.02 10.04 -39.26 -0.39 -2.41 16 5 C 0.01 0.08 9.80 -39.35 -0.39 -0.30 16 6 C -0.20 -2.12 5.31 -104.30 -0.55 -2.68 16 7 C 0.17 1.95 5.94 -5.19 -0.03 1.92 16 8 N -1.12 -14.22 5.88 -11.65 -0.07 -14.29 16 9 S 2.59 43.44 5.46 -107.50 -0.59 42.85 16 10 O -0.97 -19.08 18.08 -57.54 -1.04 -20.12 16 11 O -0.97 -18.42 17.50 -57.54 -1.01 -19.43 16 12 C -0.58 -10.55 6.01 37.16 0.22 -10.33 16 13 C -0.01 -0.18 4.05 -27.88 -0.11 -0.29 16 14 C -0.52 -14.44 9.66 -34.44 -0.33 -14.77 16 15 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 18 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 22 C 0.37 4.18 7.46 -17.14 -0.13 4.05 16 23 O -0.29 -3.21 9.71 -18.72 -0.18 -3.39 16 24 C 0.04 0.31 10.38 101.05 1.05 1.36 16 25 N -0.60 -6.39 8.06 -13.40 -0.11 -6.49 16 26 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 29 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 30 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 32 H 0.08 0.83 7.86 -51.93 -0.41 0.42 16 33 H 0.41 4.79 8.61 -34.48 -0.30 4.49 16 34 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 35 H 0.13 2.14 8.14 -51.92 -0.42 1.72 16 36 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 37 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 40 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 41 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -36.14 365.54 -7.09 -43.22 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.67 Total: 1.31 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 0.16 Total: -16.66 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.60 Total: -47.11 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -2.42 Total: -45.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: 43.44 SS G_CDS: -0.59 Total: 42.85 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.14 -7.09 -43.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289699245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.716 kcal (2) G-P(sol) polarization free energy of solvation -36.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds