Wall clock time and date at job start Tue Mar 31 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34221 * 117.00191 * 2 1 4 4 O 1.20824 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00065 * 180.02562 * 3 2 1 6 6 C 1.50695 * 109.47126 * 179.97438 * 5 3 2 7 7 N 1.30639 * 125.45081 * 269.68990 * 6 5 3 8 8 N 1.40424 * 106.97706 * 179.86203 * 7 6 5 9 9 H 0.96995 * 126.83712 * 180.14362 * 8 7 6 10 10 C 1.34963 * 106.32760 * 0.39557 * 8 7 6 11 11 N 1.38668 * 126.06096 * 179.75916 * 10 8 7 12 12 C 1.34775 * 119.99982 * 359.97438 * 11 10 8 13 13 O 1.21585 * 120.00104 * 0.02562 * 12 11 10 14 14 C 1.47565 * 119.99605 * 179.97438 * 12 11 10 15 15 C 1.40052 * 119.90308 * 359.72647 * 14 12 11 16 16 C 1.36294 * 120.10490 * 179.71641 * 15 14 12 17 17 C 1.40902 * 119.89420 * 0.56006 * 16 15 14 18 18 C 1.41085 * 120.09939 * 179.69840 * 17 16 15 19 19 H 1.07999 * 120.00136 * 205.08943 * 18 17 16 20 20 C 1.40233 * 120.00271 * 25.08511 * 18 17 16 21 21 N 1.30642 * 119.99710 * 18.02664 * 20 18 17 22 22 Si 1.86798 * 120.00154 * 198.02263 * 20 18 17 23 23 H 1.48500 * 109.47299 * 94.53110 * 22 20 18 24 24 H 1.48506 * 109.47085 * 214.52706 * 22 20 18 25 25 H 1.48499 * 109.47213 * 334.53045 * 22 20 18 26 26 C 1.40900 * 119.79740 * 359.71499 * 17 16 15 27 27 C 1.36288 * 119.89831 * 0.02562 * 26 17 16 28 28 N 1.31524 * 107.87203 * 359.76630 * 10 8 7 29 29 H 1.09002 * 109.47011 * 300.00409 * 1 2 3 30 30 H 1.08999 * 109.46975 * 60.00779 * 1 2 3 31 31 H 1.09001 * 109.47128 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46548 * 299.98990 * 5 3 2 33 33 H 1.09003 * 109.47523 * 59.99207 * 5 3 2 34 34 H 0.96996 * 119.99615 * 179.97438 * 11 10 8 35 35 H 1.08000 * 119.94172 * 0.02562 * 15 14 12 36 36 H 1.08006 * 120.04863 * 180.27493 * 16 15 14 37 37 H 0.97006 * 120.00052 * 180.02562 * 21 20 18 38 38 H 1.08003 * 120.04596 * 179.97438 * 26 17 16 39 39 H 1.08002 * 119.95208 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 3.9937 2.7198 -0.0011 7 7 4.2137 3.4446 -1.0655 8 7 4.5861 4.7235 -0.6211 9 1 4.8123 5.4881 -1.1734 10 6 4.5721 4.6754 0.7276 11 7 4.8814 5.7205 1.5849 12 6 5.2367 6.9203 1.0841 13 8 5.2856 7.0864 -0.1194 14 6 5.5652 8.0326 1.9965 15 6 5.5016 7.8409 3.3823 16 6 5.8098 8.8637 4.2288 17 6 6.1814 10.1189 3.7076 18 6 6.4951 11.1825 4.5798 19 1 6.3839 12.2041 4.2476 20 6 6.9513 10.9133 5.8783 21 7 7.4197 9.7301 6.1737 22 14 6.8891 12.2464 7.1853 23 1 5.6349 12.1131 7.9691 24 1 8.0567 12.1054 8.0921 25 1 6.9264 13.5804 6.5339 26 6 6.2384 10.3087 2.3126 27 6 5.9336 9.2786 1.4738 28 7 4.2133 3.4614 1.0846 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.9564 0.7805 0.8893 33 1 3.9559 0.7807 -0.8908 34 1 4.8420 5.5881 2.5450 35 1 5.2127 6.8796 3.7809 36 1 5.7647 8.7136 5.2974 37 1 7.7349 9.5436 7.0720 38 1 6.5223 11.2693 1.9087 39 1 5.9766 9.4233 0.4044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340158383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:20 Heat of formation + Delta-G solvation = -13.648220 kcal Electronic energy + Delta-G solvation = -26130.534750 eV Core-core repulsion = 22039.997709 eV Total energy + Delta-G solvation = -4090.537041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.18187 -40.55210 -39.56193 -37.45577 -36.70958 -34.91937 -34.14546 -33.14641 -31.41818 -30.51278 -29.69471 -29.18408 -27.45582 -26.29180 -23.48534 -22.32864 -21.67814 -21.05970 -20.66491 -19.72419 -17.98742 -17.91059 -17.70597 -17.25544 -16.86190 -16.63752 -16.24430 -15.71141 -15.62858 -14.60387 -14.30145 -14.22149 -13.88798 -13.87241 -13.60440 -13.46462 -13.01306 -12.50896 -12.34543 -12.29727 -12.21166 -12.02378 -11.65222 -11.45089 -11.20003 -11.05308 -11.03635 -10.86377 -10.70671 -10.31603 -10.05233 -10.00738 -9.78651 -9.63178 -9.54026 -8.66933 -7.96161 -7.80275 -7.25992 -4.83286 1.50275 1.90760 2.02757 2.34647 2.37794 2.76669 2.83470 2.85390 2.87912 3.03137 3.24256 3.55786 3.59905 4.18320 4.30349 4.55441 4.65935 4.86033 4.93898 5.09733 5.21838 5.27137 5.32989 5.48966 5.81322 5.92809 6.07373 6.10929 6.18516 6.48711 6.56687 6.61136 6.76876 6.87318 7.13562 7.24302 7.42495 7.48083 7.53832 7.63675 7.64183 7.83682 8.16916 8.23093 8.36030 8.39576 8.51252 9.65273 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.002085 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.305985 B =13426.459345 C =14144.017408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.467 3.533 4 O -0.492 6.492 5 C -0.012 4.012 6 C 0.244 3.756 7 N -0.307 5.307 8 N -0.467 5.467 9 H 0.453 0.547 10 C 0.524 3.476 11 N -0.634 5.634 12 C 0.579 3.421 13 O -0.564 6.564 14 C -0.293 4.293 15 C -0.058 4.058 16 C -0.175 4.175 17 C 0.130 3.870 18 C -0.427 4.427 19 H 0.090 0.910 20 C 0.072 3.928 21 N -0.760 5.760 22 Si 0.918 3.082 23 H -0.263 1.263 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.237 4.237 27 C -0.011 4.011 28 N -0.561 5.561 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.432 0.568 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.291 0.709 38 H 0.102 0.898 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 -13.629 -3.721 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.377 6.377 5 C -0.052 4.052 6 C -0.040 4.040 7 N -0.141 5.141 8 N -0.197 5.197 9 H 0.308 0.692 10 C 0.158 3.842 11 N -0.288 5.288 12 C 0.379 3.621 13 O -0.444 6.444 14 C -0.298 4.298 15 C -0.077 4.077 16 C -0.194 4.194 17 C 0.126 3.874 18 C -0.454 4.454 19 H 0.108 0.892 20 C -0.152 4.152 21 N -0.382 5.382 22 Si 0.741 3.259 23 H -0.188 1.188 24 H -0.198 1.198 25 H -0.181 1.181 26 C -0.257 4.257 27 C -0.031 4.031 28 N -0.299 5.299 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.273 0.727 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.048 -13.615 -4.709 15.625 hybrid contribution 0.016 1.129 0.984 1.498 sum -6.032 -12.486 -3.725 14.358 Atomic orbital electron populations 1.23275 0.76033 1.03662 1.02747 1.86465 1.23627 1.33061 1.84494 1.23321 0.91486 0.81558 0.72933 1.90740 1.66899 1.36269 1.43812 1.19330 0.88436 0.89406 1.08046 1.22761 0.98940 0.96092 0.86173 1.77874 1.24692 0.89891 1.21594 1.48380 1.54402 1.12070 1.04880 0.69217 1.20311 0.93448 0.88661 0.81775 1.42952 1.67642 1.07902 1.10276 1.18982 0.73961 0.80790 0.88378 1.90454 1.55563 1.82095 1.16259 1.18436 1.25855 0.93609 0.91918 1.20478 0.97744 0.97512 0.92011 1.20970 1.05292 0.93745 0.99380 1.17857 0.85440 0.92586 0.91498 1.20004 1.34468 0.95168 0.95738 0.89232 1.26194 0.92181 0.96900 0.99898 1.69726 1.24064 1.22102 1.22267 0.86119 0.79160 0.81135 0.79527 1.18762 1.19766 1.18054 1.20716 1.12920 0.98624 0.93397 1.20339 0.93145 0.91371 0.98223 1.70374 1.28678 1.00554 1.30337 0.91773 0.91867 0.87981 0.84666 0.85077 0.72723 0.88945 0.85956 0.89771 0.87975 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.49 10.56 -39.23 -0.41 -3.90 16 3 C 0.47 5.62 7.95 36.01 0.29 5.91 16 4 O -0.49 -7.95 15.78 -18.75 -0.30 -8.24 16 5 C -0.01 -0.13 6.44 -29.04 -0.19 -0.31 16 6 C 0.24 3.74 6.62 -156.87 -1.04 2.70 16 7 N -0.31 -5.14 12.78 32.42 0.41 -4.73 16 8 N -0.47 -8.23 7.05 30.09 0.21 -8.01 16 9 H 0.45 7.91 6.47 -182.36 -1.18 6.73 16 10 C 0.52 9.28 8.84 -320.40 -2.83 6.45 16 11 N -0.63 -10.81 5.34 -13.69 -0.07 -10.88 16 12 C 0.58 11.26 7.72 -12.46 -0.10 11.17 16 13 O -0.56 -11.64 13.85 5.29 0.07 -11.56 16 14 C -0.29 -6.09 5.89 -104.73 -0.62 -6.70 16 15 C -0.06 -1.18 9.47 -39.60 -0.38 -1.55 16 16 C -0.17 -3.94 8.63 -39.27 -0.34 -4.28 16 17 C 0.13 3.05 5.57 -106.80 -0.59 2.46 16 18 C -0.43 -9.80 9.04 -37.75 -0.34 -10.14 16 19 H 0.09 1.95 7.91 -52.49 -0.42 1.54 16 20 C 0.07 1.54 5.13 -17.31 -0.09 1.45 16 21 N -0.76 -16.88 10.99 55.56 0.61 -16.27 16 22 Si 0.92 16.03 29.60 -169.99 -5.03 11.00 16 23 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 24 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 25 H -0.26 -4.47 7.11 56.52 0.40 -4.07 16 26 C -0.24 -5.25 9.73 -39.28 -0.38 -5.64 16 27 C -0.01 -0.25 9.52 -39.60 -0.38 -0.62 16 28 N -0.56 -9.49 11.23 -11.30 -0.13 -9.62 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.14 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.43 6.48 6.82 -40.82 -0.28 6.21 16 35 H 0.09 1.57 6.37 -52.49 -0.33 1.23 16 36 H 0.12 2.80 6.19 -52.48 -0.33 2.48 16 37 H 0.29 5.78 8.29 -40.82 -0.34 5.44 16 38 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 39 H 0.10 2.11 7.63 -52.49 -0.40 1.71 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -29.12 348.06 -9.91 -39.03 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -4.60 Total: 15.74 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -5.92 Total: 2.21 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 1.04 Total: -49.51 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.64 Total: -23.71 kcal Atomic # 14 Polarization: 16.03 SS G_CDS: -5.03 Total: 11.00 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.12 -9.91 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340158383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.377 kcal (2) G-P(sol) polarization free energy of solvation -29.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds