Wall clock time and date at job start Tue Mar 31 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34221 * 117.00191 * 2 1 4 4 O 1.20824 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00065 * 180.02562 * 3 2 1 6 6 C 1.50695 * 109.47126 * 179.97438 * 5 3 2 7 7 N 1.30639 * 125.45081 * 269.68990 * 6 5 3 8 8 N 1.40424 * 106.97706 * 179.86203 * 7 6 5 9 9 H 0.96995 * 126.83712 * 180.14362 * 8 7 6 10 10 C 1.34963 * 106.32760 * 0.39557 * 8 7 6 11 11 N 1.38668 * 126.06096 * 179.75916 * 10 8 7 12 12 C 1.34775 * 119.99982 * 359.97438 * 11 10 8 13 13 O 1.21585 * 120.00104 * 0.02562 * 12 11 10 14 14 C 1.47565 * 119.99605 * 179.97438 * 12 11 10 15 15 C 1.40052 * 119.90308 * 359.72647 * 14 12 11 16 16 C 1.36294 * 120.10490 * 179.71641 * 15 14 12 17 17 C 1.40902 * 119.89420 * 0.56006 * 16 15 14 18 18 C 1.41085 * 120.09939 * 179.69840 * 17 16 15 19 19 H 1.07999 * 120.00136 * 205.08943 * 18 17 16 20 20 C 1.40233 * 120.00271 * 25.08511 * 18 17 16 21 21 N 1.30642 * 119.99710 * 18.02664 * 20 18 17 22 22 Si 1.86798 * 120.00154 * 198.02263 * 20 18 17 23 23 H 1.48500 * 109.47299 * 94.53110 * 22 20 18 24 24 H 1.48506 * 109.47085 * 214.52706 * 22 20 18 25 25 H 1.48499 * 109.47213 * 334.53045 * 22 20 18 26 26 C 1.40900 * 119.79740 * 359.71499 * 17 16 15 27 27 C 1.36288 * 119.89831 * 0.02562 * 26 17 16 28 28 N 1.31524 * 107.87203 * 359.76630 * 10 8 7 29 29 H 1.09002 * 109.47011 * 300.00409 * 1 2 3 30 30 H 1.08999 * 109.46975 * 60.00779 * 1 2 3 31 31 H 1.09001 * 109.47128 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46548 * 299.98990 * 5 3 2 33 33 H 1.09003 * 109.47523 * 59.99207 * 5 3 2 34 34 H 0.96996 * 119.99615 * 179.97438 * 11 10 8 35 35 H 1.08000 * 119.94172 * 0.02562 * 15 14 12 36 36 H 1.08006 * 120.04863 * 180.27493 * 16 15 14 37 37 H 0.97006 * 120.00052 * 180.02562 * 21 20 18 38 38 H 1.08003 * 120.04596 * 179.97438 * 26 17 16 39 39 H 1.08002 * 119.95208 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 3.9937 2.7198 -0.0011 7 7 4.2137 3.4446 -1.0655 8 7 4.5861 4.7235 -0.6211 9 1 4.8123 5.4881 -1.1734 10 6 4.5721 4.6754 0.7276 11 7 4.8814 5.7205 1.5849 12 6 5.2367 6.9203 1.0841 13 8 5.2856 7.0864 -0.1194 14 6 5.5652 8.0326 1.9965 15 6 5.5016 7.8409 3.3823 16 6 5.8098 8.8637 4.2288 17 6 6.1814 10.1189 3.7076 18 6 6.4951 11.1825 4.5798 19 1 6.3839 12.2041 4.2476 20 6 6.9513 10.9133 5.8783 21 7 7.4197 9.7301 6.1737 22 14 6.8891 12.2464 7.1853 23 1 5.6349 12.1131 7.9691 24 1 8.0567 12.1054 8.0921 25 1 6.9264 13.5804 6.5339 26 6 6.2384 10.3087 2.3126 27 6 5.9336 9.2786 1.4738 28 7 4.2133 3.4614 1.0846 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.9564 0.7805 0.8893 33 1 3.9559 0.7807 -0.8908 34 1 4.8420 5.5881 2.5450 35 1 5.2127 6.8796 3.7809 36 1 5.7647 8.7136 5.2974 37 1 7.7349 9.5436 7.0720 38 1 6.5223 11.2693 1.9087 39 1 5.9766 9.4233 0.4044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340158383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:19 Heat of formation + Delta-G solvation = -28.824552 kcal Electronic energy + Delta-G solvation = -26131.192845 eV Core-core repulsion = 22039.997709 eV Total energy + Delta-G solvation = -4091.195136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.47965 -41.50490 -41.06182 -39.10457 -37.61245 -36.37585 -35.78069 -34.32924 -32.73536 -32.01024 -31.38058 -30.35421 -28.21281 -27.89567 -24.98355 -23.51036 -23.14123 -22.60834 -22.02123 -20.99971 -19.49074 -19.29074 -18.80816 -18.65068 -17.96467 -17.63247 -17.40033 -17.19136 -17.01073 -16.16411 -15.80264 -15.71816 -15.19899 -14.85850 -14.64589 -14.57995 -14.44473 -14.00023 -13.81127 -13.47327 -13.33390 -13.17127 -12.94772 -12.90904 -12.73131 -12.47936 -12.40570 -11.84606 -11.81417 -11.74528 -11.46620 -11.38302 -11.27195 -11.21295 -11.13220 -10.05024 -9.64612 -9.50566 -8.87026 -6.55606 0.01526 0.53400 1.00273 1.12428 1.12754 1.21684 1.39691 1.44539 1.54059 1.79341 1.97011 2.13530 2.15614 2.67114 3.07225 3.45769 3.61294 3.82428 3.90803 4.23320 4.33298 4.33851 4.36035 4.38905 4.42653 4.59395 4.73723 4.86699 4.89562 4.96525 5.07564 5.20227 5.24524 5.36256 5.51107 5.66523 5.79192 5.93611 6.04416 6.06950 6.15216 6.47425 6.66500 6.69534 6.79841 6.81741 6.92261 8.07564 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.002085 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.305985 B =13426.459345 C =14144.017408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.471 3.529 4 O -0.541 6.541 5 C -0.012 4.012 6 C 0.243 3.757 7 N -0.321 5.321 8 N -0.475 5.475 9 H 0.451 0.549 10 C 0.510 3.490 11 N -0.621 5.621 12 C 0.586 3.414 13 O -0.576 6.576 14 C -0.298 4.298 15 C -0.050 4.050 16 C -0.196 4.196 17 C 0.103 3.897 18 C -0.457 4.457 19 H 0.090 0.910 20 C 0.037 3.963 21 N -0.787 5.787 22 Si 0.988 3.012 23 H -0.259 1.259 24 H -0.265 1.265 25 H -0.256 1.256 26 C -0.250 4.250 27 C -0.019 4.019 28 N -0.565 5.565 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.138 0.862 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.441 0.559 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.300 0.700 38 H 0.109 0.891 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.188 -15.461 -3.216 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.314 3.686 4 O -0.431 6.431 5 C -0.051 4.051 6 C -0.040 4.040 7 N -0.153 5.153 8 N -0.204 5.204 9 H 0.305 0.695 10 C 0.143 3.857 11 N -0.275 5.275 12 C 0.384 3.616 13 O -0.457 6.457 14 C -0.302 4.302 15 C -0.069 4.069 16 C -0.215 4.215 17 C 0.100 3.900 18 C -0.484 4.484 19 H 0.108 0.892 20 C -0.183 4.183 21 N -0.410 5.410 22 Si 0.807 3.193 23 H -0.184 1.184 24 H -0.190 1.190 25 H -0.180 1.180 26 C -0.269 4.269 27 C -0.039 4.039 28 N -0.303 5.303 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.156 0.844 32 H 0.185 0.815 33 H 0.184 0.816 34 H 0.284 0.716 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.339 -15.508 -4.209 17.274 hybrid contribution 0.041 1.516 0.720 1.679 sum -6.298 -13.992 -3.489 15.736 Atomic orbital electron populations 1.23565 0.74669 1.05912 1.02273 1.86467 1.24922 1.31627 1.83746 1.23628 0.92072 0.81412 0.71460 1.90731 1.68048 1.37896 1.46421 1.19679 0.87377 0.86683 1.11322 1.23697 0.97403 0.97772 0.85159 1.77877 1.25380 0.89662 1.22386 1.48413 1.54625 1.12500 1.04904 0.69480 1.20463 0.94181 0.89079 0.81951 1.42657 1.66985 1.07191 1.10705 1.18724 0.73816 0.81171 0.87890 1.90455 1.55948 1.82541 1.16716 1.18620 1.25298 0.93880 0.92436 1.20742 0.96178 0.98364 0.91611 1.20996 1.06824 0.94334 0.99360 1.18204 0.86126 0.93437 0.92241 1.20249 1.35867 0.95185 0.97061 0.89153 1.26962 0.91193 0.98990 1.01190 1.69742 1.24319 1.23646 1.23264 0.85082 0.79294 0.78179 0.76708 1.18373 1.18960 1.17977 1.20861 1.13476 0.99312 0.93290 1.20508 0.93098 0.91659 0.98606 1.70424 1.28525 1.00308 1.31021 0.92374 0.92326 0.84354 0.81474 0.81569 0.71613 0.85669 0.86695 0.88837 0.87285 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -5.96 10.56 -51.33 -0.54 -6.50 16 3 C 0.47 10.44 7.95 71.24 0.57 11.01 16 4 O -0.54 -17.12 15.78 21.97 0.35 -16.77 16 5 C -0.01 -0.20 6.44 29.10 0.19 -0.01 16 6 C 0.24 7.00 6.62 138.63 0.92 7.92 16 7 N -0.32 -10.35 12.78 -51.34 -0.66 -11.01 16 8 N -0.48 -16.43 7.05 -58.72 -0.41 -16.85 16 9 H 0.45 15.70 6.47 -213.12 -1.38 14.32 16 10 C 0.51 17.52 8.84 260.65 2.30 19.82 16 11 N -0.62 -20.49 5.34 -315.48 -1.68 -22.18 16 12 C 0.59 22.37 7.72 86.70 0.67 23.04 16 13 O -0.58 -23.55 13.85 -3.98 -0.06 -23.61 16 14 C -0.30 -12.25 5.89 -19.94 -0.12 -12.37 16 15 C -0.05 -2.00 9.47 22.26 0.21 -1.79 16 16 C -0.20 -8.96 8.63 22.47 0.19 -8.76 16 17 C 0.10 4.97 5.57 -21.28 -0.12 4.86 16 18 C -0.46 -21.42 9.04 23.45 0.21 -21.21 16 19 H 0.09 4.04 7.91 -2.91 -0.02 4.02 16 20 C 0.04 1.62 5.13 85.35 0.44 2.05 16 21 N -0.79 -35.19 10.99 21.87 0.24 -34.95 16 22 Si 0.99 32.50 29.60 68.60 2.03 34.53 16 23 H -0.26 -8.32 7.11 99.48 0.71 -7.62 16 24 H -0.27 -8.33 7.11 99.48 0.71 -7.62 16 25 H -0.26 -8.31 7.11 99.48 0.71 -7.61 16 26 C -0.25 -11.31 9.73 22.47 0.22 -11.10 16 27 C -0.02 -0.84 9.52 22.26 0.21 -0.63 16 28 N -0.56 -18.22 11.23 -189.65 -2.13 -20.35 16 29 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 31 H 0.14 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.17 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.17 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.44 12.56 6.82 -92.71 -0.63 11.93 16 35 H 0.13 4.05 6.37 -2.91 -0.02 4.03 16 36 H 0.12 5.36 6.19 -2.91 -0.02 5.34 16 37 H 0.30 11.88 8.29 -92.70 -0.77 11.12 16 38 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 39 H 0.11 4.56 7.63 -2.91 -0.02 4.53 16 Total: -1.00 -63.74 348.06 3.36 -60.38 By element: Atomic # 1 Polarization: 43.77 SS G_CDS: -0.86 Total: 42.90 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 7.09 Total: 14.40 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -4.64 Total: -105.33 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -0.25 Total: -46.88 kcal Atomic # 14 Polarization: 32.50 SS G_CDS: 2.03 Total: 34.53 kcal Total: -63.74 3.36 -60.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340158383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.553 kcal (2) G-P(sol) polarization free energy of solvation -63.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds