Wall clock time and date at job start Tue Mar 31 2020 06:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34718 * 116.99993 * 2 1 4 4 O 1.21473 * 120.00022 * 0.02562 * 3 2 1 5 5 C 1.47755 * 119.99837 * 179.97438 * 3 2 1 6 6 N 1.34580 * 126.05427 * 0.02938 * 5 3 2 7 7 C 1.30857 * 107.27120 * 179.97438 * 6 5 3 8 8 N 1.34605 * 107.63168 * 0.02562 * 7 6 5 9 9 C 1.46503 * 125.74241 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47288 * 124.99808 * 9 8 7 11 11 O 1.21284 * 119.99916 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00325 * 179.97438 * 10 9 8 13 13 C 1.39237 * 119.99918 * 175.70670 * 12 10 9 14 14 C 1.39477 * 119.83215 * 215.01705 * 13 12 10 15 15 C 1.36383 * 120.17022 * 179.72267 * 14 13 12 16 16 C 1.40873 * 119.82284 * 0.57284 * 15 14 13 17 17 C 1.41147 * 120.16278 * 179.67465 * 16 15 14 18 18 H 1.07997 * 120.00333 * 214.80226 * 17 16 15 19 19 C 1.39915 * 119.99780 * 34.80725 * 17 16 15 20 20 N 1.30873 * 119.99944 * 355.55737 * 19 17 16 21 21 Si 1.86794 * 119.99716 * 175.55520 * 19 17 16 22 22 H 1.48494 * 109.47685 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47160 * 120.00245 * 21 19 17 24 24 H 1.48503 * 109.47287 * 239.99775 * 21 19 17 25 25 C 1.40869 * 119.67177 * 359.70162 * 16 15 14 26 26 C 1.36368 * 119.82968 * 0.02562 * 25 16 15 27 27 N 1.28844 * 108.51375 * 359.97438 * 8 7 6 28 28 H 1.08997 * 109.46758 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46722 * 299.99812 * 1 2 3 30 30 H 1.08996 * 109.47115 * 59.99838 * 1 2 3 31 31 H 1.07995 * 126.18481 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47406 * 244.99826 * 9 8 7 33 33 H 1.09002 * 109.47332 * 4.99977 * 9 8 7 34 34 H 0.97002 * 119.99378 * 355.71318 * 12 10 9 35 35 H 1.08004 * 119.92115 * 0.02562 * 14 13 12 36 36 H 1.07993 * 120.08643 * 180.25403 * 15 14 13 37 37 H 0.96998 * 119.99927 * 180.02562 * 20 19 17 38 38 H 1.08008 * 120.08368 * 179.97438 * 25 16 15 39 39 H 1.08008 * 119.91807 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5391 1.2776 0.0006 6 7 4.3870 0.2325 0.0006 7 6 5.6022 0.7181 0.0006 8 7 5.5048 2.0606 0.0012 9 6 6.6288 3.0002 0.0020 10 6 6.4920 3.9482 -1.1615 11 8 5.5482 3.8491 -1.9167 12 7 7.4178 4.9068 -1.3622 13 6 7.3405 5.7249 -2.4862 14 6 8.5099 6.1591 -3.1102 15 6 8.4422 6.9559 -4.2149 16 6 7.1869 7.3502 -4.7184 17 6 7.1086 8.1803 -5.8572 18 1 6.3216 8.9157 -5.9364 19 6 8.0505 8.0505 -6.8837 20 7 9.0539 7.2210 -6.7500 21 14 7.8756 9.0611 -8.4449 22 1 6.6651 9.9157 -8.3486 23 1 9.0756 9.9191 -8.6162 24 1 7.7470 8.1514 -9.6117 25 6 6.0104 6.9123 -4.0793 26 6 6.0941 6.1113 -2.9789 27 7 4.2566 2.3803 0.0010 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 6.5177 0.1453 0.0002 32 1 6.6288 3.5661 0.9337 33 1 7.5642 2.4478 -0.0875 34 1 8.1381 5.0267 -0.7236 35 1 9.4716 5.8595 -2.7204 36 1 9.3484 7.2879 -4.6994 37 1 9.7071 7.1313 -7.4614 38 1 5.0445 7.2109 -4.4594 39 1 5.1930 5.7744 -2.4880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342155696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:13 Heat of formation + Delta-G solvation = 14.858199 kcal Electronic energy + Delta-G solvation = -26409.714687 eV Core-core repulsion = 22320.413777 eV Total energy + Delta-G solvation = -4089.300910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.69563 -40.35074 -39.85715 -37.43445 -36.61071 -34.84445 -34.48694 -33.06936 -32.02905 -29.92268 -29.58334 -28.71585 -27.68221 -25.18073 -24.37406 -22.80845 -21.79479 -21.14714 -20.81947 -19.92120 -18.54124 -17.74168 -17.34268 -17.28218 -17.09209 -16.59468 -16.02794 -15.93256 -15.28462 -15.20182 -15.09795 -14.03068 -13.94158 -13.80929 -13.48494 -13.30433 -12.82217 -12.75002 -12.33883 -12.23541 -12.09121 -11.79435 -11.46095 -11.23964 -11.04419 -10.99899 -10.97244 -10.82593 -10.71352 -10.64266 -10.19496 -9.89485 -9.57174 -9.55395 -9.24169 -9.01318 -7.63717 -6.97969 -6.69528 -4.42030 1.05596 1.62594 1.79330 2.30972 2.42988 2.85539 3.00804 3.01635 3.06304 3.11608 3.18170 3.33739 3.89937 3.93104 4.13493 4.46064 4.56988 4.61233 4.69369 4.80478 4.89548 4.98520 5.28776 5.56852 5.64308 5.98188 6.06861 6.08727 6.19819 6.35837 6.59021 6.79100 6.98073 7.09621 7.20564 7.41607 7.55470 7.59365 7.73570 7.86807 7.97617 8.09461 8.23220 8.44029 8.58166 8.85380 8.90472 10.21496 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.002329 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.484561 B =12017.199823 C =12996.369687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.337 6.337 3 C 0.572 3.428 4 O -0.480 6.480 5 C 0.145 3.855 6 N -0.465 5.465 7 C 0.194 3.806 8 N -0.282 5.282 9 C 0.099 3.901 10 C 0.482 3.518 11 O -0.499 6.499 12 N -0.641 5.641 13 C -0.005 4.005 14 C -0.116 4.116 15 C -0.143 4.143 16 C 0.102 3.898 17 C -0.458 4.458 18 H 0.077 0.923 19 C 0.069 3.931 20 N -0.810 5.810 21 Si 0.916 3.084 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.206 4.206 26 C -0.082 4.082 27 N -0.204 5.204 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.231 0.769 32 H 0.128 0.872 33 H 0.141 0.859 34 H 0.398 0.602 35 H 0.092 0.908 36 H 0.133 0.867 37 H 0.278 0.722 38 H 0.097 0.903 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.776 -12.413 14.714 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.252 6.252 3 C 0.411 3.589 4 O -0.363 6.363 5 C -0.131 4.131 6 N -0.190 5.190 7 C -0.101 4.101 8 N -0.078 5.078 9 C -0.025 4.025 10 C 0.265 3.735 11 O -0.373 6.373 12 N -0.285 5.285 13 C -0.096 4.096 14 C -0.137 4.137 15 C -0.163 4.163 16 C 0.099 3.901 17 C -0.488 4.488 18 H 0.096 0.904 19 C -0.146 4.146 20 N -0.437 5.437 21 Si 0.741 3.259 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.226 4.226 26 C -0.102 4.102 27 N -0.046 5.046 28 H 0.125 0.875 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.247 0.753 32 H 0.146 0.854 33 H 0.159 0.841 34 H 0.232 0.768 35 H 0.110 0.890 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.950 -12.012 14.030 18.704 hybrid contribution 0.677 0.343 -0.544 0.934 sum -2.273 -11.670 13.486 17.979 Atomic orbital electron populations 1.23384 0.75301 1.04088 1.02935 1.86604 1.23613 1.30952 1.84010 1.18732 0.84851 0.81973 0.73350 1.90920 1.65132 1.35974 1.44266 1.22109 0.93527 0.85889 1.11586 1.71338 0.98893 1.29865 1.18865 1.26622 0.99195 0.82192 1.02100 1.46974 1.04655 1.07309 1.48875 1.21989 0.86622 0.92333 1.01605 1.20150 0.84655 0.82203 0.86524 1.90839 1.30159 1.70753 1.45549 1.42788 1.28616 1.32333 1.24812 1.17183 0.94529 1.04216 0.93721 1.20287 0.94411 1.01560 0.97395 1.21199 0.99279 1.01165 0.94655 1.17762 0.90751 0.90418 0.91129 1.19571 1.10646 1.17236 1.01393 0.90443 1.25906 0.93714 0.94477 1.00542 1.69761 1.10353 1.30387 1.33197 0.86125 0.79234 0.79870 0.80652 1.18521 1.19925 1.19931 1.20827 0.97642 1.04145 0.99964 1.20418 0.95358 0.97160 0.97221 1.74460 0.90059 1.24765 1.15276 0.87545 0.91586 0.91472 0.75254 0.85388 0.84132 0.76841 0.88966 0.84935 0.91111 0.88501 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.34 -4.36 10.58 -40.54 -0.43 -4.78 16 3 C 0.57 8.95 7.97 34.62 0.28 9.22 16 4 O -0.48 -8.54 16.88 -19.25 -0.32 -8.86 16 5 C 0.15 2.30 7.99 -156.34 -1.25 1.05 16 6 N -0.46 -6.34 11.42 -12.38 -0.14 -6.49 16 7 C 0.19 1.93 12.57 -90.47 -1.14 0.79 16 8 N -0.28 -3.36 3.18 -63.76 -0.20 -3.56 16 9 C 0.10 0.83 6.93 -5.19 -0.04 0.80 16 10 C 0.48 7.20 7.67 -10.99 -0.08 7.11 16 11 O -0.50 -10.41 13.09 5.55 0.07 -10.34 16 12 N -0.64 -9.53 5.30 -9.74 -0.05 -9.58 16 13 C 0.00 -0.09 6.30 -83.57 -0.53 -0.62 16 14 C -0.12 -2.49 9.90 -39.79 -0.39 -2.88 16 15 C -0.14 -3.55 8.62 -39.25 -0.34 -3.89 16 16 C 0.10 2.69 5.55 -106.80 -0.59 2.09 16 17 C -0.46 -12.07 9.02 -37.85 -0.34 -12.41 16 18 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 19 C 0.07 1.72 5.42 -17.33 -0.09 1.62 16 20 N -0.81 -20.63 10.60 55.55 0.59 -20.04 16 21 Si 0.92 18.79 29.56 -169.99 -5.03 13.77 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 25 C -0.21 -5.18 9.74 -39.26 -0.38 -5.57 16 26 C -0.08 -1.92 8.61 -39.79 -0.34 -2.27 16 27 N -0.20 -3.32 11.04 32.06 0.35 -2.97 16 28 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.23 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.14 0.45 8.06 -51.93 -0.42 0.03 16 34 H 0.40 3.99 8.82 -40.82 -0.36 3.63 16 35 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.13 3.40 6.13 -52.49 -0.32 3.08 16 37 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 38 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 39 H 0.11 2.58 6.22 -52.48 -0.33 2.25 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -37.33 351.94 -7.96 -45.30 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -3.93 Total: 5.82 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -4.18 Total: -3.55 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.55 Total: -42.64 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.68 Total: -23.99 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.33 -7.96 -45.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342155696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.155 kcal (2) G-P(sol) polarization free energy of solvation -37.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds