Wall clock time and date at job start Tue Mar 31 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99858 * 2 1 4 4 O 1.20824 * 120.00139 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99922 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46943 * 180.02562 * 5 3 2 7 7 C 1.36884 * 119.99920 * 280.77128 * 6 5 3 8 8 H 1.07998 * 120.00274 * 316.00294 * 7 6 5 9 9 C 1.39036 * 119.99793 * 135.99209 * 7 6 5 10 10 N 1.31369 * 120.00340 * 338.44103 * 9 7 6 11 11 Si 1.86802 * 119.99778 * 158.43943 * 9 7 6 12 12 H 1.48502 * 109.47055 * 90.00326 * 11 9 7 13 13 H 1.48503 * 109.46890 * 210.00253 * 11 9 7 14 14 H 1.48497 * 109.47166 * 330.00086 * 11 9 7 15 15 C 1.34776 * 120.00193 * 100.77704 * 6 5 3 16 16 O 1.21622 * 119.99808 * 186.78322 * 15 6 5 17 17 C 1.47556 * 120.00077 * 6.78335 * 15 6 5 18 18 C 1.39772 * 120.08427 * 142.26276 * 17 15 6 19 19 C 1.37718 * 119.91054 * 180.02562 * 18 17 15 20 20 C 1.39042 * 120.08531 * 0.02562 * 19 18 17 21 21 N 1.39928 * 119.91030 * 180.02562 * 20 19 18 22 22 C 1.36353 * 127.11735 * 359.68878 * 21 20 19 23 23 N 1.30499 * 107.19430 * 179.83835 * 22 21 20 24 24 N 1.28540 * 109.92239 * 0.43809 * 23 22 21 25 25 C 1.30504 * 109.91587 * 359.72024 * 24 23 22 26 26 C 1.39046 * 120.17423 * 0.27658 * 20 19 18 27 27 C 1.37709 * 120.08547 * 359.44484 * 26 20 19 28 28 H 1.09000 * 109.47117 * 59.99779 * 1 2 3 29 29 H 1.09002 * 109.46735 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47069 * 299.99986 * 1 2 3 31 31 H 1.08992 * 109.47429 * 59.99746 * 5 3 2 32 32 H 1.09003 * 109.47255 * 299.99658 * 5 3 2 33 33 H 0.97000 * 120.00554 * 185.05068 * 10 9 7 34 34 H 1.07995 * 120.04501 * 0.02562 * 18 17 15 35 35 H 1.07995 * 119.95918 * 179.97438 * 19 18 17 36 36 H 1.08000 * 126.39883 * 359.95965 * 22 21 20 37 37 H 1.08006 * 126.40133 * 179.97438 * 25 24 23 38 38 H 1.07999 * 119.95172 * 179.70677 * 26 20 19 39 39 H 1.08002 * 120.04661 * 180.27239 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 3.9627 3.3997 -1.1639 8 1 4.3416 2.9621 -2.0757 9 6 3.4555 4.6942 -1.1726 10 7 2.6292 5.0823 -0.2278 11 14 3.9489 5.8816 -2.5276 12 1 2.9942 5.7659 -3.6591 13 1 3.9267 7.2701 -2.0012 14 1 5.3180 5.5530 -2.9994 15 6 4.3825 3.2635 1.1470 16 8 4.6089 4.4581 1.1744 17 6 4.5466 2.4531 2.3691 18 6 5.5975 2.7202 3.2510 19 6 5.7477 1.9613 4.3904 20 6 4.8558 0.9302 4.6636 21 7 5.0114 0.1618 5.8226 22 6 5.9806 0.2928 6.7727 23 7 5.7561 -0.6171 7.6808 24 7 4.7226 -1.3108 7.3597 25 6 4.2287 -0.8768 6.2324 26 6 3.8127 0.6574 3.7855 27 6 3.6525 1.4154 2.6471 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7810 -0.8907 32 1 3.9564 0.7807 0.8892 33 1 2.2182 5.9597 -0.2732 34 1 6.2909 3.5206 3.0392 35 1 6.5597 2.1667 5.0721 36 1 6.7828 1.0159 6.7744 37 1 3.3622 -1.2676 5.7196 38 1 3.1248 -0.1474 3.9989 39 1 2.8395 1.2057 1.9677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348796483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:42 Heat of formation + Delta-G solvation = 42.860464 kcal Electronic energy + Delta-G solvation = -28116.628045 eV Core-core repulsion = 24028.541405 eV Total energy + Delta-G solvation = -4088.086640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.35714 -40.37505 -39.40602 -37.94423 -35.88717 -34.88713 -34.35148 -32.23831 -31.50286 -30.53023 -29.82444 -28.61727 -26.47073 -25.46901 -23.96766 -23.70885 -21.97065 -21.26557 -20.86786 -19.77214 -18.79914 -17.43222 -17.13475 -16.63473 -16.29756 -16.21015 -15.75022 -15.51588 -15.44697 -14.79768 -14.65302 -14.31707 -14.23211 -13.69407 -13.57598 -13.32283 -13.13335 -12.82150 -12.51349 -12.25419 -11.81962 -11.73560 -11.63414 -11.27939 -11.17192 -10.94743 -10.89332 -10.78680 -10.66275 -10.35156 -10.31669 -9.80751 -9.66364 -9.12940 -8.96394 -8.63471 -8.31293 -7.43141 -6.22297 -4.01496 0.54245 1.21025 1.91609 2.22315 2.68154 2.82963 3.01812 3.22670 3.32255 3.34113 3.50391 4.10561 4.20337 4.32137 4.36163 4.49477 4.59112 4.66875 4.99698 5.03554 5.09239 5.24704 5.25819 5.33755 5.38848 5.43938 5.49655 5.56196 5.61178 5.76445 5.81453 5.82774 5.88725 6.15280 6.22563 6.47933 6.53575 6.86053 6.89108 7.44874 8.01944 8.42315 8.46576 8.75682 8.86114 9.37626 9.92352 10.82320 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.003826 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.202706 B = 7315.740417 C = 8835.346121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.377 6.377 3 C 0.416 3.584 4 O -0.444 6.444 5 C 0.092 3.908 6 N -0.417 5.417 7 C -0.362 4.362 8 H 0.086 0.914 9 C 0.081 3.919 10 N -0.789 5.789 11 Si 0.912 3.088 12 H -0.282 1.282 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.504 3.496 16 O -0.512 6.512 17 C -0.086 4.086 18 C -0.054 4.054 19 C -0.126 4.126 20 C 0.113 3.887 21 N -0.420 5.420 22 C 0.158 3.842 23 N -0.296 5.296 24 N -0.296 5.296 25 C 0.158 3.842 26 C -0.125 4.125 27 C -0.090 4.090 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.265 0.735 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.221 0.779 37 H 0.221 0.779 38 H 0.133 0.867 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 -10.589 4.821 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.296 6.296 3 C 0.253 3.747 4 O -0.324 6.324 5 C -0.034 4.034 6 N -0.138 5.138 7 C -0.488 4.488 8 H 0.104 0.896 9 C -0.135 4.135 10 N -0.419 5.419 11 Si 0.738 3.262 12 H -0.208 1.208 13 H -0.208 1.208 14 H -0.193 1.193 15 C 0.293 3.707 16 O -0.389 6.389 17 C -0.091 4.091 18 C -0.074 4.074 19 C -0.146 4.146 20 C 0.020 3.980 21 N -0.106 5.106 22 C -0.129 4.129 23 N -0.134 5.134 24 N -0.134 5.134 25 C -0.129 4.129 26 C -0.145 4.145 27 C -0.109 4.109 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.076 0.924 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.238 0.762 37 H 0.238 0.762 38 H 0.150 0.850 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.404 -10.290 6.261 12.127 hybrid contribution -0.607 1.372 -1.888 2.412 sum 0.796 -8.918 4.373 9.965 Atomic orbital electron populations 1.23092 0.77864 1.02570 1.02252 1.86541 1.22397 1.35137 1.85495 1.25057 0.93336 0.81525 0.74763 1.90847 1.65876 1.35319 1.40397 1.21834 0.86535 0.89935 1.05105 1.42968 1.55119 1.07246 1.08469 1.18996 1.45046 0.97085 0.87696 0.89623 1.25298 0.93216 0.98476 0.96484 1.69913 1.21106 1.19314 1.31558 0.86223 0.79238 0.80257 0.80446 1.20792 1.20802 1.19302 1.17696 0.82962 0.87558 0.82499 1.90679 1.51580 1.13660 1.82959 1.20801 0.95365 0.95718 0.97215 1.21078 0.96894 0.97812 0.91621 1.20730 0.99387 0.95457 0.99011 1.17747 0.99030 0.94699 0.86508 1.44234 1.22787 1.25509 1.18097 1.26747 0.96285 1.02659 0.87176 1.74206 1.11108 1.05350 1.22770 1.74212 1.06034 1.22136 1.11024 1.26757 1.00194 0.89921 0.95980 1.20700 0.97516 1.01849 0.94435 1.21565 0.99044 0.94175 0.96155 0.92328 0.88934 0.92497 0.88052 0.87165 0.92440 0.83878 0.84888 0.76238 0.76238 0.84951 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.38 -5.75 10.57 -39.26 -0.41 -6.17 16 3 C 0.42 7.82 5.98 36.01 0.22 8.04 16 4 O -0.44 -10.45 15.88 -18.75 -0.30 -10.75 16 5 C 0.09 1.64 5.47 -5.19 -0.03 1.61 16 6 N -0.42 -9.61 2.12 -117.27 -0.25 -9.86 16 7 C -0.36 -9.31 8.82 -15.00 -0.13 -9.44 16 8 H 0.09 2.08 7.92 -52.49 -0.42 1.67 16 9 C 0.08 2.18 4.28 -17.45 -0.07 2.10 16 10 N -0.79 -22.70 11.74 55.50 0.65 -22.04 16 11 Si 0.91 20.92 29.61 -169.99 -5.03 15.89 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 C 0.50 11.81 6.81 -12.46 -0.08 11.72 16 16 O -0.51 -14.11 14.38 5.26 0.08 -14.03 16 17 C -0.09 -1.54 5.39 -104.95 -0.57 -2.11 16 18 C -0.05 -0.80 9.61 -39.20 -0.38 -1.18 16 19 C -0.13 -1.47 9.46 -39.47 -0.37 -1.84 16 20 C 0.11 1.33 6.65 -83.56 -0.56 0.77 16 21 N -0.42 -4.73 2.99 -63.16 -0.19 -4.92 16 22 C 0.16 1.73 12.06 -89.17 -1.08 0.66 16 23 N -0.30 -4.14 12.19 29.85 0.36 -3.77 16 24 N -0.30 -4.14 12.19 29.85 0.36 -3.78 16 25 C 0.16 1.75 12.06 -89.16 -1.08 0.67 16 26 C -0.13 -1.50 9.46 -39.48 -0.37 -1.87 16 27 C -0.09 -1.36 7.35 -39.20 -0.29 -1.65 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.10 1.58 8.12 -51.93 -0.42 1.16 16 32 H 0.11 1.64 4.30 -51.93 -0.22 1.42 16 33 H 0.27 7.36 8.32 -40.82 -0.34 7.02 16 34 H 0.14 2.08 8.03 -52.49 -0.42 1.66 16 35 H 0.13 1.12 6.84 -52.49 -0.36 0.76 16 36 H 0.22 1.52 7.17 -52.49 -0.38 1.14 16 37 H 0.22 1.56 7.17 -52.48 -0.38 1.19 16 38 H 0.13 1.18 6.84 -52.49 -0.36 0.82 16 39 H 0.14 2.18 4.01 -52.49 -0.21 1.97 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -36.27 340.09 -6.89 -43.16 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.57 Total: 2.14 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -3.72 Total: 9.00 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.94 Total: -44.37 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.64 Total: -30.95 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.27 -6.89 -43.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348796483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.023 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds