Wall clock time and date at job start Tue Mar 31 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47247 * 2 1 4 4 C 1.34893 * 117.00098 * 180.02562 * 3 2 1 5 5 O 1.21619 * 119.99590 * 359.97438 * 4 3 2 6 6 C 1.46489 * 119.99657 * 179.97438 * 4 3 2 7 7 C 1.37998 * 126.26123 * 179.97438 * 6 4 3 8 8 C 1.39795 * 106.96952 * 180.02562 * 7 6 4 9 9 S 1.76197 * 126.07736 * 179.97438 * 8 7 6 10 10 O 1.42101 * 106.40487 * 336.48740 * 9 8 7 11 11 O 1.42106 * 106.40322 * 203.56532 * 9 8 7 12 12 N 1.65605 * 107.21776 * 90.02634 * 9 8 7 13 13 C 1.46497 * 120.00032 * 65.00008 * 12 9 8 14 14 H 1.09007 * 109.47078 * 24.99629 * 13 12 9 15 15 C 1.53000 * 109.47021 * 265.00209 * 13 12 9 16 16 C 1.50694 * 109.47115 * 144.99990 * 13 12 9 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.35483 * 107.84179 * 0.22729 * 8 7 6 25 25 N 1.34955 * 108.98479 * 359.63022 * 24 8 7 26 26 C 1.46507 * 125.63556 * 180.14791 * 25 24 8 27 27 H 1.08996 * 109.47039 * 60.00030 * 1 2 3 28 28 H 1.09006 * 109.47021 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46455 * 299.99842 * 1 2 3 30 30 H 1.09003 * 109.46726 * 239.99684 * 2 1 3 31 31 H 1.08996 * 109.47039 * 119.99970 * 2 1 3 32 32 H 1.08002 * 126.51270 * 0.02562 * 7 6 4 33 33 H 0.96997 * 119.99799 * 244.99417 * 12 9 8 34 34 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 35 35 H 1.09002 * 109.47106 * 299.99878 * 15 13 12 36 36 H 1.08998 * 109.47089 * 59.99825 * 15 13 12 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.08001 * 125.50668 * 179.76908 * 24 8 7 39 39 H 1.08995 * 109.47168 * 270.26257 * 26 25 24 40 40 H 1.09002 * 109.46924 * 30.26239 * 26 25 24 41 41 H 1.09002 * 109.46815 * 150.25929 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3513 1.5457 -0.0005 5 8 4.0921 0.5811 -0.0005 6 6 3.9112 2.8994 -0.0011 7 6 5.2514 3.2284 -0.0012 8 6 5.3288 4.6242 -0.0013 9 16 6.8082 5.5813 -0.0007 10 8 7.8239 4.7498 0.5435 11 8 6.4662 6.8484 0.5441 12 7 7.2200 5.8481 -1.5824 13 6 6.3476 6.6534 -2.4407 14 1 5.7594 7.3337 -1.8247 15 6 5.4086 5.7317 -3.2215 16 6 7.1880 7.4489 -3.4059 17 1 8.2643 7.3636 -3.3823 18 6 6.5828 8.2866 -4.3187 19 7 5.2721 8.3909 -4.3473 20 14 7.6246 9.2733 -5.5148 21 1 6.7402 10.0895 -6.3848 22 1 8.5358 10.1675 -4.7564 23 1 8.4258 8.3468 -6.3543 24 6 4.0642 5.1101 0.0039 25 7 3.1966 4.0764 -0.0010 26 6 1.7358 4.1880 -0.0009 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 6.0824 2.5386 -0.0013 33 1 8.0389 5.4712 -1.9406 34 1 4.7592 6.3308 -3.8597 35 1 5.9967 5.0513 -3.8375 36 1 4.8008 5.1562 -2.5233 37 1 4.8464 8.9805 -4.9892 38 1 3.7940 6.1558 0.0087 39 1 1.3736 4.2157 1.0267 40 1 1.4413 5.1031 -0.5148 41 1 1.3057 3.3282 -0.5148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354629596.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:23 Heat of formation + Delta-G solvation = -115.855300 kcal Electronic energy + Delta-G solvation = -26721.189049 eV Core-core repulsion = 22729.371177 eV Total energy + Delta-G solvation = -3991.817872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64949 -40.06927 -36.80218 -36.52342 -35.38783 -35.15230 -33.21738 -32.14644 -32.09826 -29.79088 -28.24666 -26.91250 -25.23784 -24.58520 -22.64750 -21.51032 -20.90091 -20.16758 -19.00142 -18.11882 -17.24898 -17.17557 -16.89383 -16.03977 -15.68440 -15.48592 -15.27166 -15.12850 -14.52176 -14.25749 -14.05001 -13.64578 -13.53541 -13.07319 -12.80900 -12.71649 -12.61963 -12.46283 -12.24521 -12.13084 -11.87150 -11.67666 -11.45643 -11.35575 -11.15614 -10.97359 -10.95284 -10.85642 -10.71942 -10.58865 -10.32790 -10.07088 -9.27825 -9.14216 -8.61309 -8.56116 -8.23550 -6.12684 -4.18555 1.10196 1.18419 2.08724 2.29514 2.64804 2.93473 3.29004 3.32926 3.36426 3.94950 4.37022 4.40912 4.47255 4.54606 4.57209 4.62965 4.80480 4.90843 4.97605 5.07967 5.20386 5.20669 5.31674 5.39123 5.45978 5.54571 5.62667 5.89435 6.11475 6.39923 6.40763 6.63570 6.79981 6.85499 6.92668 7.02816 7.55688 7.59156 7.68784 7.90736 8.02640 8.29757 8.84132 9.47087 10.93590 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.015834 B = 0.003479 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.936937 B = 8046.815716 C = 8939.111867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.362 6.362 4 C 0.544 3.456 5 O -0.500 6.500 6 C -0.066 4.066 7 C 0.002 3.998 8 C -0.749 4.749 9 S 2.716 3.284 10 O -0.982 6.982 11 O -0.967 6.967 12 N -1.100 6.100 13 C 0.270 3.730 14 H 0.050 0.950 15 C -0.158 4.158 16 C -0.519 4.519 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.891 5.891 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.275 1.275 23 H -0.277 1.277 24 C 0.164 3.836 25 N -0.411 5.411 26 C 0.060 3.940 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.165 0.835 33 H 0.409 0.591 34 H 0.091 0.909 35 H 0.033 0.967 36 H 0.013 0.987 37 H 0.264 0.736 38 H 0.193 0.807 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.938 -12.137 7.719 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.280 6.280 4 C 0.389 3.611 5 O -0.387 6.387 6 C -0.173 4.173 7 C -0.023 4.023 8 C -0.840 4.840 9 S 2.803 3.197 10 O -0.973 6.973 11 O -0.957 6.957 12 N -0.861 5.861 13 C 0.166 3.834 14 H 0.068 0.932 15 C -0.217 4.217 16 C -0.559 4.559 17 H 0.082 0.918 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.729 3.271 21 H -0.213 1.213 22 H -0.201 1.201 23 H -0.202 1.202 24 C 0.020 3.980 25 N -0.084 5.084 26 C -0.081 4.081 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.182 0.818 33 H 0.243 0.757 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.210 0.790 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.085 -12.088 8.432 19.060 hybrid contribution 0.105 -0.172 -1.277 1.293 sum -11.981 -12.260 7.155 18.575 Atomic orbital electron populations 1.21818 0.92482 1.03137 1.03499 1.23053 0.95296 0.79876 1.02897 1.86584 1.23902 1.32678 1.84882 1.19635 0.80455 0.87888 0.73090 1.90909 1.60284 1.40840 1.46708 1.19406 0.91422 0.83209 1.23291 1.20941 0.93890 0.93116 0.94389 1.31417 1.18004 1.07090 1.27509 1.01018 0.72560 0.73083 0.73070 1.93512 1.55985 1.69899 1.77859 1.93554 1.84824 1.39909 1.77429 1.55516 1.34033 1.66299 1.30273 1.18560 0.88116 0.87714 0.89023 0.93190 1.22288 0.99997 0.99061 1.00397 1.21219 0.93453 1.24511 1.16692 0.91754 1.24897 0.95116 0.96580 0.97277 1.69845 1.08264 1.38125 1.36708 0.86510 0.80005 0.79979 0.80631 1.21268 1.20082 1.20223 1.21873 0.87403 0.93743 0.95000 1.44192 1.07358 1.05301 1.51499 1.22428 0.75722 1.05630 1.04306 0.91401 0.90098 0.91488 0.90980 0.91055 0.81796 0.75719 0.89059 0.94775 0.96820 0.92648 0.79048 0.90009 0.88686 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.16 0.38 -0.45 16 2 C 0.06 0.53 6.20 37.16 0.23 0.76 16 3 O -0.36 -3.99 7.65 -41.02 -0.31 -4.31 16 4 C 0.54 7.66 7.92 34.05 0.27 7.93 16 5 O -0.50 -8.12 16.68 -19.36 -0.32 -8.44 16 6 C -0.07 -0.97 6.89 -82.00 -0.56 -1.54 16 7 C 0.00 0.03 10.46 -39.09 -0.41 -0.37 16 8 C -0.75 -12.43 5.25 -39.98 -0.21 -12.64 16 9 S 2.72 51.31 5.86 -107.50 -0.63 50.68 16 10 O -0.98 -19.86 17.87 -57.17 -1.02 -20.88 16 11 O -0.97 -20.66 17.18 -57.17 -0.98 -21.64 16 12 N -1.10 -22.03 5.46 -5.88 -0.03 -22.06 16 13 C 0.27 6.30 2.89 -69.09 -0.20 6.10 16 14 H 0.05 1.25 7.50 -51.92 -0.39 0.86 16 15 C -0.16 -3.48 9.29 37.16 0.35 -3.14 16 16 C -0.52 -13.45 8.76 -34.44 -0.30 -13.75 16 17 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -23.76 11.32 55.43 0.63 -23.13 16 20 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.16 2.39 10.20 -17.16 -0.18 2.21 16 25 N -0.41 -5.30 3.15 -120.40 -0.38 -5.68 16 26 C 0.06 0.51 10.56 59.85 0.63 1.14 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.16 2.50 8.06 -52.49 -0.42 2.08 16 33 H 0.41 7.53 8.83 -34.47 -0.30 7.23 16 34 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.01 0.25 6.22 -51.93 -0.32 -0.07 16 37 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.83 6.15 -51.93 -0.32 0.51 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -33.45 362.18 -8.14 -41.59 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.42 Total: 5.16 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.09 Total: -12.19 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.22 Total: -50.87 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -2.64 Total: -55.27 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 51.31 SS G_CDS: -0.63 Total: 50.68 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.45 -8.14 -41.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354629596.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.268 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds