Wall clock time and date at job start Tue Mar 31 2020 04:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00008 * 2 1 4 4 H 1.48495 * 109.47550 * 89.99775 * 3 2 1 5 5 H 1.48511 * 109.47116 * 209.99923 * 3 2 1 6 6 H 1.48499 * 109.47060 * 329.99353 * 3 2 1 7 7 C 1.37883 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00098 * 5.23736 * 7 2 1 9 9 C 1.50704 * 119.99782 * 185.23007 * 7 2 1 10 10 O 1.42891 * 112.94610 * 52.32111 * 9 7 2 11 11 C 1.53945 * 113.73960 * 280.58000 * 9 7 2 12 12 N 1.47582 * 86.11797 * 222.05041 * 11 9 7 13 13 C 1.34776 * 134.49131 * 204.64457 * 12 11 9 14 14 O 1.21281 * 119.99710 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00331 * 359.97438 * 13 12 11 16 16 N 1.46494 * 109.47210 * 180.02562 * 15 13 12 17 17 C 1.34531 * 124.46206 * 269.69855 * 16 15 13 18 18 O 1.21448 * 125.70664 * 0.04129 * 17 16 15 19 19 C 1.47812 * 108.58085 * 179.90665 * 17 16 15 20 20 C 1.38565 * 134.29885 * 180.13174 * 19 17 16 21 21 C 1.38614 * 119.71914 * 180.28588 * 20 19 17 22 22 C 1.38222 * 120.46115 * 359.95420 * 21 20 19 23 23 C 1.38620 * 120.45778 * 0.02562 * 22 21 20 24 24 C 1.38565 * 119.72107 * 359.97438 * 23 22 21 25 25 C 1.34528 * 124.46186 * 90.00178 * 16 15 13 26 26 O 1.21447 * 125.70697 * 359.94559 * 25 16 15 27 27 C 1.47579 * 91.01427 * 24.64505 * 12 11 9 28 28 H 0.97008 * 119.99681 * 174.95530 * 1 2 3 29 29 H 0.96707 * 113.99791 * 304.09314 * 10 9 7 30 30 H 1.09003 * 113.77282 * 336.35677 * 11 9 7 31 31 H 1.09009 * 113.76274 * 107.75196 * 11 9 7 32 32 H 1.08998 * 109.46957 * 300.00592 * 15 13 12 33 33 H 1.09008 * 109.46933 * 60.00266 * 15 13 12 34 34 H 1.08001 * 120.13700 * 0.24068 * 20 19 17 35 35 H 1.07998 * 119.76755 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.77282 * 180.02562 * 22 21 20 37 37 H 1.08005 * 120.13455 * 179.97438 * 23 22 21 38 38 H 1.08998 * 113.77112 * 221.06054 * 27 12 11 39 39 H 1.09000 * 113.87384 * 89.66748 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5468 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4680 -2.1275 -0.0844 9 6 3.5069 -1.1967 0.1195 10 8 3.9785 -0.4412 1.2369 11 6 4.2336 -0.8768 -1.1994 12 7 5.1662 -1.9598 -0.8316 13 6 6.4458 -2.2496 -1.1399 14 8 6.9722 -3.2389 -0.6760 15 6 7.2223 -1.3451 -2.0618 16 7 8.5770 -1.8739 -2.2379 17 6 9.6270 -1.5515 -1.4611 18 8 9.6022 -0.7882 -0.5168 19 6 10.8151 -2.2843 -1.9472 20 6 12.1411 -2.3498 -1.5504 21 6 13.0279 -3.1560 -2.2469 22 6 12.5982 -3.8950 -3.3331 23 6 11.2746 -3.8397 -3.7413 24 6 10.3768 -3.0382 -3.0546 25 6 8.9363 -2.7415 -3.2013 26 8 8.2000 -3.2039 -4.0492 27 6 4.1349 -2.5980 0.0092 28 1 -0.4850 -0.8369 -0.0739 29 1 3.6757 0.4772 1.2467 30 1 3.6421 -1.0897 -2.0898 31 1 4.6935 0.1113 -1.2190 32 1 6.7227 -1.2971 -3.0293 33 1 7.2753 -0.3455 -1.6303 34 1 12.4824 -1.7745 -0.7024 35 1 14.0616 -3.2073 -1.9385 36 1 13.2985 -4.5198 -3.8674 37 1 10.9446 -4.4190 -4.5910 38 1 4.5159 -2.9842 0.9546 39 1 3.5135 -3.3171 -0.5245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356549580.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:22 Heat of formation + Delta-G solvation = -40.601801 kcal Electronic energy + Delta-G solvation = -27641.191391 eV Core-core repulsion = 23517.192804 eV Total energy + Delta-G solvation = -4123.998587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.54505 -39.87118 -38.81181 -38.76441 -37.64692 -35.89058 -34.46897 -32.66581 -32.60744 -31.53607 -29.72154 -27.79310 -25.73898 -25.35617 -24.93418 -23.40190 -22.47747 -20.60604 -19.95962 -18.85011 -18.10534 -18.04237 -17.52789 -17.27245 -16.64937 -16.14053 -15.87436 -15.61272 -15.29045 -15.17764 -14.77331 -14.55985 -14.40436 -14.21686 -14.11023 -13.47036 -13.27547 -13.11718 -12.74047 -12.70495 -12.43113 -12.15583 -12.07767 -11.96421 -11.43632 -10.88150 -10.80377 -10.51627 -10.51385 -10.42571 -9.95274 -9.67123 -9.62383 -9.54522 -9.38532 -9.04733 -8.61579 -8.14793 -6.75060 -4.51613 -0.23705 0.57279 1.74670 1.98343 2.73299 2.82999 3.06517 3.09916 3.22065 3.28241 3.32463 3.35482 4.03922 4.13817 4.22212 4.44584 4.53778 4.64768 4.74277 4.80970 4.82957 5.02874 5.06280 5.10912 5.18178 5.36351 5.50989 5.54494 5.68487 5.76222 5.91029 5.97066 6.15529 6.16710 6.25847 6.30917 6.44848 6.54643 7.01632 7.44084 7.45149 8.02969 8.12127 8.37541 8.42539 8.55962 9.24103 10.60900 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.027460 B = 0.002872 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.416326 B = 9747.319146 C =10051.293631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.034 3.966 3 Si 1.032 2.968 4 H -0.275 1.275 5 H -0.268 1.268 6 H -0.279 1.279 7 C -0.610 4.610 8 H 0.072 0.928 9 C 0.198 3.802 10 O -0.553 6.553 11 C 0.055 3.945 12 N -0.629 5.629 13 C 0.518 3.482 14 O -0.550 6.550 15 C 0.097 3.903 16 N -0.559 5.559 17 C 0.578 3.422 18 O -0.456 6.456 19 C -0.132 4.132 20 C -0.046 4.046 21 C -0.097 4.097 22 C -0.098 4.098 23 C -0.046 4.046 24 C -0.133 4.133 25 C 0.579 3.421 26 O -0.460 6.460 27 C 0.130 3.870 28 H 0.274 0.726 29 H 0.355 0.645 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.075 0.925 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.365 -2.557 -8.727 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.173 4.173 3 Si 0.861 3.139 4 H -0.202 1.202 5 H -0.194 1.194 6 H -0.205 1.205 7 C -0.648 4.648 8 H 0.091 0.909 9 C 0.157 3.843 10 O -0.363 6.363 11 C -0.068 4.068 12 N -0.364 5.364 13 C 0.305 3.695 14 O -0.429 6.429 15 C -0.027 4.027 16 N -0.301 5.301 17 C 0.367 3.633 18 O -0.327 6.327 19 C -0.136 4.136 20 C -0.065 4.065 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.065 4.065 24 C -0.137 4.137 25 C 0.368 3.632 26 O -0.331 6.331 27 C 0.008 3.992 28 H 0.085 0.915 29 H 0.205 0.795 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.094 0.906 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 24.393 -1.846 -8.261 25.820 hybrid contribution -0.339 -1.168 -0.223 1.237 sum 24.054 -3.014 -8.485 25.684 Atomic orbital electron populations 1.70766 1.06663 1.31321 1.43474 1.25829 0.96534 1.02478 0.92502 0.84285 0.75685 0.76120 0.77859 1.20185 1.19388 1.20527 1.22255 0.89418 0.96241 1.56889 0.90950 1.20488 0.93299 0.88506 0.81988 1.86472 1.76311 1.25712 1.47802 1.24880 0.89005 0.89959 1.02935 1.50098 1.09044 1.29069 1.48148 1.20163 0.81625 0.85917 0.81793 1.90679 1.69040 1.28591 1.54597 1.21493 0.79888 0.98681 1.02603 1.46025 1.10384 1.43291 1.30350 1.18323 0.83461 0.80383 0.81143 1.90823 1.84776 1.32818 1.24263 1.20547 0.94901 1.00098 0.98037 1.20817 0.90082 0.96742 0.98829 1.21457 1.00170 0.95118 0.94811 1.21456 0.95221 0.98402 0.96529 1.20811 0.91864 0.95349 0.98447 1.20542 0.93909 1.00792 0.98439 1.18309 0.87724 0.77197 0.79923 1.90808 1.58948 1.49272 1.34037 1.23300 0.85159 0.97019 0.93718 0.91532 0.79464 0.88475 0.90644 0.85678 0.85676 0.83941 0.84044 0.84051 0.83972 0.90639 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 13.70 55.43 0.76 -24.31 16 2 C 0.03 0.89 5.47 -17.82 -0.10 0.80 16 3 Si 1.03 21.69 24.79 -169.99 -4.21 17.47 16 4 H -0.27 -5.53 6.95 56.52 0.39 -5.14 16 5 H -0.27 -4.90 4.86 56.52 0.27 -4.62 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.61 -15.58 9.04 -34.44 -0.31 -15.89 16 8 H 0.07 1.97 8.04 -52.49 -0.42 1.55 16 9 C 0.20 4.47 1.06 -90.84 -0.10 4.38 16 10 O -0.55 -12.83 13.42 -35.23 -0.47 -13.30 16 11 C 0.05 1.06 6.78 -2.97 -0.02 1.04 16 12 N -0.63 -12.66 3.61 -178.30 -0.64 -13.30 16 13 C 0.52 10.27 8.13 -10.99 -0.09 10.18 16 14 O -0.55 -12.64 17.16 5.56 0.10 -12.55 16 15 C 0.10 1.50 5.97 -5.20 -0.03 1.47 16 16 N -0.56 -8.58 2.11 -118.91 -0.25 -8.83 16 17 C 0.58 8.66 8.02 -12.45 -0.10 8.56 16 18 O -0.46 -7.86 17.67 5.41 0.10 -7.77 16 19 C -0.13 -1.54 6.40 -104.84 -0.67 -2.21 16 20 C -0.05 -0.38 10.09 -39.32 -0.40 -0.77 16 21 C -0.10 -0.53 10.03 -39.45 -0.40 -0.93 16 22 C -0.10 -0.53 10.04 -39.45 -0.40 -0.93 16 23 C -0.05 -0.37 10.09 -39.32 -0.40 -0.77 16 24 C -0.13 -1.54 6.40 -104.84 -0.67 -2.21 16 25 C 0.58 8.55 8.02 -12.46 -0.10 8.45 16 26 O -0.46 -7.69 17.68 5.41 0.10 -7.60 16 27 C 0.13 2.75 8.23 -2.97 -0.02 2.73 16 28 H 0.27 7.70 8.72 -40.82 -0.36 7.35 16 29 H 0.35 7.57 4.23 45.56 0.19 7.76 16 30 H 0.10 1.77 8.09 -51.93 -0.42 1.35 16 31 H 0.08 1.32 6.54 -51.92 -0.34 0.98 16 32 H 0.13 1.65 7.96 -51.93 -0.41 1.23 16 33 H 0.13 1.72 7.96 -51.92 -0.41 1.31 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 36 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 37 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.09 1.86 8.09 -51.93 -0.42 1.44 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -34.63 342.83 -6.80 -41.43 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -3.64 Total: 9.70 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: -3.80 Total: 13.88 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.14 Total: -46.45 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -0.19 Total: -41.21 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.21 Total: 17.47 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.63 -6.80 -41.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356549580.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.828 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds