Wall clock time and date at job start Tue Mar 31 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42908 * 109.47242 * 2 1 4 4 C 1.35672 * 117.00201 * 180.02562 * 3 2 1 5 5 C 1.38921 * 119.68089 * 179.97438 * 4 3 2 6 6 C 1.38381 * 119.10876 * 180.02562 * 5 4 3 7 7 C 1.38834 * 118.48612 * 359.97438 * 6 5 4 8 8 S 1.76193 * 120.35522 * 179.97438 * 7 6 5 9 9 O 1.42103 * 106.40296 * 23.56270 * 8 7 6 10 10 O 1.42101 * 106.40426 * 156.48231 * 8 7 6 11 11 N 1.65595 * 107.21987 * 270.02223 * 8 7 6 12 12 C 1.36937 * 120.00044 * 275.20758 * 11 8 7 13 13 H 1.07996 * 120.00415 * 326.17212 * 12 11 8 14 14 C 1.38811 * 119.99772 * 146.16826 * 12 11 8 15 15 N 1.31618 * 120.00524 * 336.46895 * 14 12 11 16 16 Si 1.86803 * 119.99925 * 156.46512 * 14 12 11 17 17 H 1.48499 * 109.47291 * 59.99972 * 16 14 12 18 18 H 1.48501 * 109.47399 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46943 * 300.00294 * 16 14 12 20 20 C 1.46510 * 120.00019 * 95.21198 * 11 8 7 21 21 C 1.53000 * 109.47198 * 95.00175 * 20 11 8 22 22 O 1.42899 * 109.47272 * 64.99772 * 21 20 11 23 23 C 1.42899 * 113.99763 * 179.97438 * 22 21 20 24 24 C 1.38046 * 119.28844 * 359.97438 * 7 6 5 25 25 N 1.31969 * 120.83545 * 0.02562 * 24 7 6 26 26 H 1.09003 * 109.47647 * 59.99589 * 1 2 3 27 27 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47078 * 299.99450 * 1 2 3 29 29 H 1.09000 * 109.47078 * 240.00550 * 2 1 3 30 30 H 1.09000 * 109.47573 * 119.99886 * 2 1 3 31 31 H 1.07995 * 120.45066 * 359.97438 * 5 4 3 32 32 H 1.07999 * 120.75424 * 179.97438 * 6 5 4 33 33 H 0.96999 * 120.00458 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.46600 * 215.00251 * 20 11 8 35 35 H 1.08995 * 109.46665 * 334.99907 * 20 11 8 36 36 H 1.09003 * 109.46897 * 185.00182 * 21 20 11 37 37 H 1.09003 * 109.46693 * 304.99448 * 21 20 11 38 38 H 1.09006 * 109.47017 * 60.00570 * 23 22 21 39 39 H 1.09003 * 109.46829 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.47187 * 300.00439 * 23 22 21 41 41 H 1.07994 * 119.58152 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 -0.0005 5 6 3.8751 2.8118 -0.0011 6 6 5.2488 2.9794 -0.0022 7 6 6.0539 1.8484 -0.0021 8 16 7.8089 2.0046 -0.0042 9 8 8.0983 3.2853 0.5394 10 8 8.3200 0.7957 0.5402 11 7 8.2954 2.0474 -1.5865 12 6 8.4988 0.8796 -2.2720 13 1 8.8798 0.0103 -1.7569 14 6 8.2153 0.8132 -3.6293 15 7 7.3528 1.6518 -4.1633 16 14 9.0580 -0.4664 -4.6979 17 1 8.7293 -1.8248 -4.1959 18 1 8.5869 -0.3288 -6.0995 19 1 10.5280 -0.2625 -4.6480 20 6 8.5082 3.3347 -2.2529 21 6 9.9880 3.7142 -2.1685 22 8 10.7646 2.7715 -2.9103 23 6 12.1688 3.0363 -2.8964 24 6 5.4646 0.6000 -0.0005 25 7 4.1512 0.4719 0.0006 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2192 3.6697 -0.0015 32 1 5.6845 3.9676 -0.0031 33 1 7.1550 1.6056 -5.1118 34 1 8.2125 3.2555 -3.2990 35 1 7.9080 4.1011 -1.7627 36 1 10.1317 4.7112 -2.5850 37 1 10.3061 3.7067 -1.1259 38 1 12.5324 3.0150 -1.8691 39 1 12.6876 2.2765 -3.4809 40 1 12.3574 4.0192 -3.3283 41 1 6.0864 -0.2830 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414455697.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:23 Heat of formation + Delta-G solvation = -110.855889 kcal Electronic energy + Delta-G solvation = -27176.661382 eV Core-core repulsion = 23185.060300 eV Total energy + Delta-G solvation = -3991.601081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.17828 -37.70246 -37.41943 -35.80768 -35.42947 -34.39001 -32.08619 -31.95620 -31.80695 -29.60838 -28.88340 -25.86787 -24.41237 -24.11737 -23.14166 -22.05726 -21.64948 -18.52875 -18.29637 -17.49418 -16.72483 -16.52877 -16.18086 -16.10244 -15.42293 -15.31985 -14.59473 -14.45234 -14.24048 -14.11504 -13.79011 -13.73933 -13.29002 -13.22706 -12.53481 -12.49596 -12.29443 -12.10734 -12.05401 -11.73101 -11.54666 -11.35722 -11.07916 -10.91399 -10.72523 -10.70359 -10.65377 -10.58880 -10.27040 -10.15024 -10.04995 -9.55480 -9.29563 -9.13915 -8.94719 -8.32539 -7.88857 -6.61252 -4.09825 1.33245 1.65301 1.82197 3.15852 3.17197 3.18927 3.29269 3.95869 4.08515 4.46207 4.54500 4.68145 4.78659 4.98756 5.02777 5.06622 5.26071 5.27868 5.43881 5.51827 5.67662 5.71068 5.76681 5.79092 5.81274 5.93177 5.97136 6.03766 6.09732 6.13861 6.16911 6.21504 6.32875 6.54180 6.82924 7.02986 7.13808 7.42841 7.46873 7.95055 8.15872 8.24167 8.67056 9.12195 10.33493 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.004369 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.810874 B = 6407.439117 C = 7399.863667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.311 6.311 4 C 0.340 3.660 5 C -0.215 4.215 6 C 0.041 3.959 7 C -0.732 4.732 8 S 2.515 3.485 9 O -1.010 7.010 10 O -0.985 6.985 11 N -0.789 5.789 12 C -0.214 4.214 13 H 0.110 0.890 14 C 0.047 3.953 15 N -0.820 5.820 16 Si 0.927 3.073 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.263 1.263 20 C 0.122 3.878 21 C 0.054 3.946 22 O -0.359 6.359 23 C 0.029 3.971 24 C 0.231 3.769 25 N -0.557 5.557 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.277 0.723 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.029 0.971 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 1.529 0.697 4.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.219 6.219 4 C 0.162 3.838 5 C -0.236 4.236 6 C 0.015 3.985 7 C -0.811 4.811 8 S 2.616 3.384 9 O -1.000 7.000 10 O -0.975 6.975 11 N -0.611 5.611 12 C -0.365 4.365 13 H 0.128 0.872 14 C -0.168 4.168 15 N -0.458 5.458 16 Si 0.753 3.247 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.188 1.188 20 C -0.005 4.005 21 C -0.025 4.025 22 O -0.276 6.276 23 C -0.068 4.068 24 C 0.075 3.925 25 N -0.281 5.281 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.636 0.973 1.511 4.973 hybrid contribution -0.009 0.305 -0.635 0.704 sum -4.646 1.278 0.876 4.897 Atomic orbital electron populations 1.21809 0.93290 1.02677 1.03093 1.22577 0.94402 0.81432 1.02696 1.86201 1.17447 1.30502 1.87704 1.19889 0.83586 0.90409 0.89966 1.21028 0.96085 0.95396 1.11121 1.21034 0.91743 0.98514 0.87179 1.33134 1.33687 0.98731 1.15535 1.12629 0.74310 0.72755 0.78687 1.93296 1.84375 1.41971 1.80352 1.93336 1.78063 1.46683 1.79456 1.53850 1.66209 1.09599 1.31437 1.19758 1.33050 0.92305 0.91394 0.87208 1.25719 0.94342 0.97800 0.98920 1.69922 1.26488 1.35252 1.14188 0.85967 0.80649 0.80086 0.78045 1.19432 1.20892 1.18802 1.21444 0.91904 0.83965 1.03157 1.23007 0.93703 0.90929 0.94857 1.88156 1.15640 1.51217 1.72630 1.22665 0.84195 0.99868 1.00098 1.22095 0.88457 0.96474 0.85508 1.67362 1.07071 1.32802 1.20842 0.91728 0.90453 0.91854 0.91490 0.91698 0.84444 0.83668 0.91305 0.86578 0.91065 0.93852 0.93862 0.94823 0.90438 0.95229 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.15 0.38 -1.11 16 2 C 0.06 0.87 6.03 37.15 0.22 1.09 16 3 O -0.31 -5.13 10.12 -18.72 -0.19 -5.32 16 4 C 0.34 6.40 7.49 -17.12 -0.13 6.27 16 5 C -0.22 -3.84 10.04 -39.28 -0.39 -4.23 16 6 C 0.04 0.80 9.64 -39.31 -0.38 0.42 16 7 C -0.73 -15.68 5.99 -39.43 -0.24 -15.92 16 8 S 2.51 58.11 5.62 -107.50 -0.60 57.50 16 9 O -1.01 -24.04 16.15 -57.17 -0.92 -24.97 16 10 O -0.99 -24.90 16.30 -57.17 -0.93 -25.83 16 11 N -0.79 -18.18 2.84 -59.90 -0.17 -18.35 16 12 C -0.21 -5.11 8.44 -15.06 -0.13 -5.24 16 13 H 0.11 2.65 7.45 -52.49 -0.39 2.26 16 14 C 0.05 1.08 4.98 -17.43 -0.09 1.00 16 15 N -0.82 -19.32 11.28 55.49 0.63 -18.70 16 16 Si 0.93 18.66 29.61 -169.99 -5.03 13.62 16 17 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 C 0.12 2.57 5.43 -4.04 -0.02 2.55 16 21 C 0.05 1.03 6.28 37.16 0.23 1.26 16 22 O -0.36 -7.16 9.94 -35.23 -0.35 -7.51 16 23 C 0.03 0.44 11.01 101.05 1.11 1.56 16 24 C 0.23 4.88 10.68 -17.56 -0.19 4.69 16 25 N -0.56 -11.16 9.22 -13.33 -0.12 -11.28 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 32 H 0.15 2.51 7.71 -52.49 -0.40 2.10 16 33 H 0.28 6.17 8.31 -40.82 -0.34 5.83 16 34 H 0.12 2.58 5.32 -51.93 -0.28 2.31 16 35 H 0.07 1.38 7.46 -51.93 -0.39 0.99 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.17 3.41 7.62 -52.49 -0.40 3.01 16 LS Contribution 361.98 15.07 5.45 5.45 Total: -1.00 -29.66 361.98 -7.50 -37.16 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.64 Total: 5.87 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 0.39 Total: -7.65 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.33 Total: -48.33 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: -2.39 Total: -63.63 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: 58.11 SS G_CDS: -0.60 Total: 57.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.66 -7.50 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414455697.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.699 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds