Wall clock time and date at job start Tue Mar 31 2020 05:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34135 * 118.70990 * 2 1 4 4 O 1.21230 * 119.35694 * 359.43653 * 3 2 1 5 5 C 1.50580 * 121.28356 * 179.41246 * 3 2 1 6 6 C 1.53270 * 109.16028 * 29.11166 * 5 3 2 7 7 C 1.53242 * 108.55336 * 304.37762 * 6 5 3 8 8 H 1.08997 * 109.57134 * 175.55722 * 7 6 5 9 9 N 1.46494 * 109.52351 * 295.71912 * 7 6 5 10 10 S 1.65599 * 120.00054 * 214.68912 * 9 7 6 11 11 O 1.42104 * 104.27427 * 308.92333 * 10 9 7 12 12 O 1.42102 * 104.27909 * 181.07103 * 10 9 7 13 13 C 1.81397 * 104.45384 * 64.99386 * 10 9 7 14 14 C 1.52993 * 109.47393 * 185.97442 * 13 10 9 15 15 C 1.50706 * 115.55141 * 299.72237 * 14 13 10 16 16 H 1.07990 * 120.00259 * 95.16569 * 15 14 13 17 17 C 1.37880 * 119.99445 * 275.16529 * 15 14 13 18 18 N 1.31513 * 120.00698 * 7.13574 * 17 15 14 19 19 Si 1.86801 * 119.99418 * 187.13229 * 17 15 14 20 20 H 1.48503 * 109.46788 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.47343 * 60.00426 * 19 17 15 22 22 H 1.48502 * 109.47391 * 299.99949 * 19 17 15 23 23 C 1.52999 * 117.50161 * 85.39137 * 14 13 10 24 24 C 1.53000 * 117.50046 * 154.04901 * 14 13 10 25 25 C 1.34149 * 118.70462 * 179.97438 * 2 1 3 26 26 O 1.21225 * 119.36114 * 0.56387 * 25 2 1 27 27 H 1.09006 * 109.47073 * 270.01709 * 1 2 3 28 28 H 1.09001 * 109.47767 * 30.01811 * 1 2 3 29 29 H 1.09004 * 109.47868 * 150.01902 * 1 2 3 30 30 H 1.09007 * 109.52760 * 149.02594 * 5 3 2 31 31 H 1.09002 * 109.52679 * 269.15120 * 5 3 2 32 32 H 1.08995 * 109.62035 * 184.65784 * 6 5 3 33 33 H 1.08998 * 109.62978 * 64.10084 * 6 5 3 34 34 H 0.97002 * 119.99852 * 34.68141 * 9 7 6 35 35 H 1.09002 * 109.46938 * 65.97410 * 13 10 9 36 36 H 1.09002 * 109.47165 * 305.98187 * 13 10 9 37 37 H 0.97002 * 119.99217 * 355.42981 * 18 17 15 38 38 H 1.08998 * 117.50413 * 215.00404 * 23 14 13 39 39 H 1.09006 * 117.49708 * 0.02562 * 23 14 13 40 40 H 1.08998 * 117.49888 * 359.97438 * 24 14 13 41 41 H 1.09004 * 117.50115 * 144.99822 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1093 1.1765 0.0000 4 8 1.4681 2.2053 -0.0104 5 6 3.6135 1.2441 0.0132 6 6 4.1791 -0.0004 -0.6800 7 6 3.6135 -1.2443 0.0136 8 1 3.9425 -2.1387 -0.5155 9 7 4.0892 -1.2917 1.3983 10 16 4.4124 -2.7499 2.1134 11 8 3.2412 -3.5208 1.8820 12 8 4.8176 -2.4112 3.4326 13 6 5.8103 -3.4172 1.1695 14 6 6.1118 -4.8407 1.6422 15 6 6.4845 -4.9777 3.0960 16 1 5.7289 -5.2273 3.8259 17 6 7.7904 -4.7843 3.4939 18 7 8.6820 -4.3443 2.6331 19 14 8.2931 -5.1471 5.2561 20 1 9.7398 -4.8588 5.4274 21 1 8.0334 -6.5771 5.5605 22 1 7.5058 -4.2930 6.1813 23 6 5.3118 -5.9801 1.0077 24 6 6.7870 -5.7872 0.6476 25 6 2.1092 -1.1766 0.0005 26 8 1.4681 -2.2054 -0.0094 27 1 -0.3633 0.0003 1.0277 28 1 -0.3635 0.8898 -0.5141 29 1 -0.3635 -0.8901 -0.5135 30 1 3.9427 2.1378 -0.5170 31 1 3.9675 1.2807 1.0435 32 1 5.2663 -0.0004 -0.6022 33 1 3.8846 -0.0007 -1.7294 34 1 4.2151 -0.4688 1.8963 35 1 6.6873 -2.7890 1.3260 36 1 5.5587 -3.4320 0.1090 37 1 8.4373 -4.2190 1.7029 38 1 5.0550 -6.8288 1.6417 39 1 4.5709 -5.7156 0.2532 40 1 7.0159 -5.3959 -0.3436 41 1 7.5007 -6.5090 1.0447 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425217415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:13 Heat of formation + Delta-G solvation = -112.248146 kcal Electronic energy + Delta-G solvation = -27679.217285 eV Core-core repulsion = 23687.555831 eV Total energy + Delta-G solvation = -3991.661454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92047 -39.07073 -37.14475 -36.87733 -36.36107 -35.30356 -35.21252 -32.47342 -32.03754 -28.45711 -28.10150 -27.75391 -25.03518 -23.60060 -23.21163 -21.44864 -20.20053 -19.30316 -18.62035 -17.82799 -17.55430 -17.09591 -16.90174 -16.66149 -16.18177 -15.48757 -15.06537 -14.78772 -14.67564 -14.28658 -14.02919 -13.76058 -13.66917 -13.27394 -13.24057 -13.03847 -12.71332 -12.62666 -12.02936 -12.00237 -11.86709 -11.43732 -11.35696 -11.29509 -11.24405 -10.99766 -10.80902 -10.68575 -10.49164 -10.41361 -10.11442 -9.92398 -9.81893 -9.54928 -8.71964 -8.54753 -8.39577 -6.51377 -4.30549 0.75516 1.30579 2.27197 2.48887 3.20116 3.42686 3.46494 3.58394 3.63168 3.99292 4.12795 4.28878 4.39538 4.45263 4.62172 4.76090 4.84698 4.94284 5.04620 5.09406 5.15501 5.17632 5.24288 5.26556 5.41013 5.44241 5.52261 5.55127 5.75691 5.98373 6.11173 6.26475 6.50258 6.67133 6.70135 6.81944 6.95251 7.13298 7.17608 7.53565 7.97259 8.28425 8.71435 9.48513 10.88541 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.003873 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.324147 B = 7227.296541 C = 7512.298272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.567 5.567 3 C 0.522 3.478 4 O -0.506 6.506 5 C -0.144 4.144 6 C -0.135 4.135 7 C 0.140 3.860 8 H 0.129 0.871 9 N -1.118 6.118 10 S 2.603 3.397 11 O -0.947 6.947 12 O -0.937 6.937 13 C -0.564 4.564 14 C 0.020 3.980 15 C -0.593 4.593 16 H 0.062 0.938 17 C 0.041 3.959 18 N -0.896 5.896 19 Si 1.062 2.938 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.281 1.281 23 C -0.189 4.189 24 C -0.163 4.163 25 C 0.501 3.499 26 O -0.458 6.458 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.415 0.585 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.274 0.726 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.876 10.772 -9.667 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.311 5.311 3 C 0.312 3.688 4 O -0.379 6.379 5 C -0.184 4.184 6 C -0.174 4.174 7 C 0.029 3.971 8 H 0.147 0.853 9 N -0.875 5.875 10 S 2.699 3.301 11 O -0.937 6.937 12 O -0.927 6.927 13 C -0.697 4.697 14 C 0.018 3.982 15 C -0.630 4.630 16 H 0.080 0.920 17 C -0.166 4.166 18 N -0.529 5.529 19 Si 0.889 3.111 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.207 1.207 23 C -0.226 4.226 24 C -0.202 4.202 25 C 0.286 3.714 26 O -0.325 6.325 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.249 0.751 35 H 0.147 0.853 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.803 10.303 -7.976 15.187 hybrid contribution -0.807 0.387 -1.430 1.687 sum -8.610 10.689 -9.406 16.639 Atomic orbital electron populations 1.21948 0.77661 1.04650 1.03864 1.46542 1.10107 1.07737 1.66732 1.20989 0.91429 0.82446 0.73891 1.90734 1.68775 1.33062 1.45351 1.21956 0.89772 1.01473 1.05199 1.22163 1.03681 0.91274 1.00255 1.20965 0.88451 1.02655 0.85077 0.85325 1.56404 1.82360 1.27627 1.21149 1.05484 0.76686 0.72707 0.75223 1.93605 1.45110 1.69149 1.85829 1.93588 1.84147 1.81440 1.33519 1.30099 1.18329 1.10587 1.10683 1.18540 1.01415 0.83284 0.94990 1.21390 0.97326 1.54837 0.89462 0.91997 1.25806 0.92660 0.92059 1.06069 1.70787 1.37736 1.39177 1.05245 0.83652 0.76360 0.76774 0.74348 1.20610 1.21118 1.20658 1.23060 0.93644 1.02550 1.03390 1.22796 0.94834 1.04342 0.98250 1.21524 0.91728 0.82780 0.75386 1.90833 1.67971 1.32523 1.41158 0.91124 0.89343 0.89170 0.86196 0.86929 0.87277 0.88805 0.75116 0.85309 0.88175 0.91450 0.89241 0.90485 0.91155 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 9.99 59.84 0.60 1.22 16 2 N -0.57 -6.45 2.93 -123.18 -0.36 -6.81 16 3 C 0.52 5.39 7.48 -11.33 -0.08 5.31 16 4 O -0.51 -6.53 16.44 5.60 0.09 -6.43 16 5 C -0.14 -0.95 5.86 -27.80 -0.16 -1.12 16 6 C -0.13 -0.83 5.76 -26.47 -0.15 -0.98 16 7 C 0.14 1.49 2.85 -69.02 -0.20 1.29 16 8 H 0.13 1.24 7.05 -51.93 -0.37 0.88 16 9 N -1.12 -14.31 5.31 -5.83 -0.03 -14.34 16 10 S 2.60 49.44 5.03 -107.50 -0.54 48.90 16 11 O -0.95 -20.57 17.14 -60.26 -1.03 -21.60 16 12 O -0.94 -21.45 17.56 -57.54 -1.01 -22.46 16 13 C -0.56 -10.64 5.81 37.15 0.22 -10.43 16 14 C 0.02 0.46 0.95 -155.66 -0.15 0.32 16 15 C -0.59 -15.92 7.87 -34.44 -0.27 -16.19 16 16 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 17 C 0.04 1.12 5.39 -17.82 -0.10 1.03 16 18 N -0.90 -24.81 13.57 55.43 0.75 -24.05 16 19 Si 1.06 24.68 29.91 -169.99 -5.08 19.60 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.19 -3.98 9.95 -26.70 -0.27 -4.25 16 24 C -0.16 -3.47 8.74 -26.70 -0.23 -3.70 16 25 C 0.50 6.54 7.02 -11.32 -0.08 6.46 16 26 O -0.46 -7.74 15.81 3.94 0.06 -7.68 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.82 7.28 -51.93 -0.38 0.44 16 29 H 0.09 0.92 7.28 -51.93 -0.38 0.54 16 30 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.11 0.64 6.79 -51.93 -0.35 0.29 16 32 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.41 4.29 7.26 -34.47 -0.25 4.04 16 35 H 0.13 2.44 7.79 -51.92 -0.40 2.04 16 36 H 0.10 1.47 7.26 -51.92 -0.38 1.09 16 37 H 0.27 7.32 6.17 -40.82 -0.25 7.07 16 38 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -37.34 352.53 -8.06 -45.40 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.35 Total: 5.22 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -0.88 Total: -21.05 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.36 Total: -45.21 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -1.89 Total: -58.18 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.08 Total: 19.60 kcal Atomic # 16 Polarization: 49.44 SS G_CDS: -0.54 Total: 48.90 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.34 -8.06 -45.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425217415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.846 kcal (2) G-P(sol) polarization free energy of solvation -37.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds