Wall clock time and date at job start Tue Mar 31 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34141 * 118.70572 * 2 1 4 4 O 1.21224 * 119.36076 * 0.57362 * 3 2 1 5 5 C 1.50596 * 121.27939 * 180.54408 * 3 2 1 6 6 C 1.53241 * 109.15984 * 330.90696 * 5 3 2 7 7 C 1.53242 * 108.56682 * 55.61661 * 6 5 3 8 8 H 1.08999 * 109.52572 * 184.41378 * 7 6 5 9 9 N 1.46503 * 109.52451 * 64.28975 * 7 6 5 10 10 S 1.65595 * 119.99919 * 145.00327 * 9 7 6 11 11 O 1.42102 * 104.27616 * 308.92232 * 10 9 7 12 12 O 1.42104 * 104.27414 * 181.07149 * 10 9 7 13 13 C 1.81397 * 104.45520 * 64.99847 * 10 9 7 14 14 C 1.52995 * 109.47405 * 172.62266 * 13 10 9 15 15 C 1.50700 * 115.55093 * 294.39986 * 14 13 10 16 16 H 1.08003 * 119.99881 * 99.52459 * 15 14 13 17 17 C 1.37877 * 119.99929 * 279.79926 * 15 14 13 18 18 N 1.31516 * 120.00077 * 354.95783 * 17 15 14 19 19 Si 1.86802 * 119.99841 * 174.94843 * 17 15 14 20 20 H 1.48494 * 109.47162 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46859 * 120.00620 * 19 17 15 22 22 H 1.48505 * 109.47123 * 239.99907 * 19 17 15 23 23 C 1.52999 * 117.51707 * 80.10020 * 14 13 10 24 24 C 1.52999 * 117.49795 * 148.73031 * 14 13 10 25 25 C 1.34139 * 118.70701 * 180.02562 * 2 1 3 26 26 O 1.21227 * 119.35714 * 359.45769 * 25 2 1 27 27 H 1.09005 * 109.46932 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47129 * 119.99568 * 1 2 3 29 29 H 1.08996 * 109.47213 * 239.99657 * 1 2 3 30 30 H 1.09003 * 109.51711 * 211.00324 * 5 3 2 31 31 H 1.08996 * 109.51707 * 90.81413 * 5 3 2 32 32 H 1.08995 * 109.62701 * 295.88886 * 6 5 3 33 33 H 1.09003 * 109.61992 * 175.33480 * 6 5 3 34 34 H 0.96998 * 119.99541 * 324.99286 * 9 7 6 35 35 H 1.09004 * 109.47124 * 52.62110 * 13 10 9 36 36 H 1.09005 * 109.46957 * 292.62588 * 13 10 9 37 37 H 0.96999 * 119.99649 * 185.00518 * 18 17 15 38 38 H 1.08996 * 117.49818 * 214.97028 * 23 14 13 39 39 H 1.09004 * 117.49880 * 359.97438 * 23 14 13 40 40 H 1.08996 * 117.49934 * 359.97368 * 24 14 13 41 41 H 1.09001 * 117.50018 * 145.00387 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1093 1.1766 0.0000 4 8 1.4681 2.2053 0.0106 5 6 3.6137 1.2442 -0.0122 6 6 4.1787 0.0000 0.6813 7 6 3.6136 -1.2442 -0.0123 8 1 3.9433 -2.1379 0.5174 9 7 4.0904 -1.2920 -1.3968 10 16 4.4212 -2.7500 -2.1086 11 8 5.2780 -3.4053 -1.1835 12 8 4.8741 -2.4090 -3.4117 13 6 2.8146 -3.5881 -2.1921 14 6 2.9544 -4.8796 -3.0005 15 6 3.2900 -4.7005 -4.4587 16 1 4.3088 -4.8199 -4.7969 17 6 2.2975 -4.3788 -5.3600 18 7 1.0438 -4.3255 -4.9664 19 14 2.7337 -4.0184 -7.1403 20 1 4.2016 -4.1448 -7.3256 21 1 2.0382 -4.9864 -8.0260 22 1 2.3078 -2.6380 -7.4846 23 6 3.5367 -6.1010 -2.2863 24 6 2.0452 -6.0509 -2.6235 25 6 2.1093 -1.1765 -0.0005 26 8 1.4681 -2.2053 0.0090 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5138 -0.8901 29 1 -0.3633 -0.5139 0.8899 30 1 3.9424 2.1379 0.5183 31 1 3.9682 1.2798 -1.0423 32 1 3.8837 -0.0001 1.7305 33 1 5.2660 -0.0001 0.6040 34 1 4.2120 -0.4695 -1.8964 35 1 2.0883 -2.9342 -2.6748 36 1 2.4759 -3.8256 -1.1836 37 1 0.3384 -4.1709 -5.6139 38 1 4.1625 -6.7750 -2.8712 39 1 3.8208 -5.9845 -1.2404 40 1 1.3477 -5.9016 -1.7993 41 1 1.6898 -6.6921 -3.4301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425217416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:16 Heat of formation + Delta-G solvation = -108.188693 kcal Electronic energy + Delta-G solvation = -28030.806423 eV Core-core repulsion = 24039.321000 eV Total energy + Delta-G solvation = -3991.485423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.90875 -39.09248 -36.87490 -36.69968 -36.32540 -35.28043 -35.22316 -32.42815 -32.01683 -28.18105 -28.03929 -27.70378 -25.41977 -23.59097 -23.16498 -21.18527 -19.95419 -19.10610 -18.58984 -17.78687 -17.50105 -17.08531 -16.66600 -16.46263 -16.08364 -15.19794 -15.00671 -14.79857 -14.69601 -14.51922 -14.19455 -13.82249 -13.59680 -13.36960 -12.97196 -12.91817 -12.57856 -12.01545 -11.99566 -11.82594 -11.77157 -11.45071 -11.39399 -11.27319 -11.10051 -10.96162 -10.92197 -10.53497 -10.44809 -10.43209 -10.08980 -9.88760 -9.75104 -9.42992 -9.00984 -8.55101 -8.07841 -6.09715 -4.20214 0.87239 1.28260 2.29014 2.49587 3.24689 3.29155 3.37415 3.46356 3.60783 4.06941 4.19097 4.33536 4.39256 4.42128 4.69368 4.81885 5.04028 5.12272 5.14478 5.19255 5.22801 5.24678 5.28684 5.30347 5.50136 5.57860 5.65211 5.79173 6.01546 6.29299 6.40375 6.67431 6.69400 6.72445 6.87599 7.04069 7.18487 7.25623 7.44561 7.52791 7.84462 8.23523 8.85730 9.49788 10.97049 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.004825 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.716172 B = 5801.845371 C = 6112.803841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.563 5.563 3 C 0.523 3.477 4 O -0.505 6.505 5 C -0.145 4.145 6 C -0.130 4.130 7 C 0.134 3.866 8 H 0.140 0.860 9 N -1.116 6.116 10 S 2.592 3.408 11 O -0.971 6.971 12 O -0.936 6.936 13 C -0.545 4.545 14 C 0.040 3.960 15 C -0.504 4.504 16 H 0.070 0.930 17 C 0.077 3.923 18 N -0.875 5.875 19 Si 0.891 3.109 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.282 1.282 23 C -0.215 4.215 24 C -0.134 4.134 25 C 0.500 3.500 26 O -0.471 6.471 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.414 0.586 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.261 0.739 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 10.437 12.909 16.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.307 5.307 3 C 0.313 3.687 4 O -0.378 6.378 5 C -0.185 4.185 6 C -0.169 4.169 7 C 0.022 3.978 8 H 0.157 0.843 9 N -0.873 5.873 10 S 2.690 3.310 11 O -0.962 6.962 12 O -0.926 6.926 13 C -0.679 4.679 14 C 0.038 3.962 15 C -0.541 4.541 16 H 0.088 0.912 17 C -0.128 4.128 18 N -0.511 5.511 19 Si 0.719 3.281 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.208 1.208 23 C -0.252 4.252 24 C -0.173 4.173 25 C 0.285 3.715 26 O -0.339 6.339 27 H 0.115 0.885 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.249 0.751 35 H 0.148 0.852 36 H 0.132 0.868 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.699 10.102 12.696 16.448 hybrid contribution -0.842 0.610 -1.114 1.524 sum 1.856 10.712 11.582 15.885 Atomic orbital electron populations 1.22010 0.77390 1.04890 1.04077 1.46475 1.10242 1.07635 1.66312 1.21007 0.91450 0.82513 0.73696 1.90727 1.68683 1.33054 1.45355 1.21970 0.89767 1.01524 1.05217 1.22081 1.03633 0.91025 1.00113 1.21069 0.87663 1.03587 0.85449 0.84269 1.56306 1.83643 1.27217 1.20123 1.05784 0.78495 0.73182 0.73534 1.93507 1.63749 1.74349 1.64549 1.93588 1.79987 1.81066 1.37928 1.29975 1.18891 1.11400 1.07617 1.18322 1.01546 0.82996 0.93379 1.20580 0.95291 1.48809 0.89468 0.91166 1.24973 0.94876 0.93939 0.98971 1.70026 0.99044 1.47848 1.34210 0.86526 0.79255 0.78016 0.84342 1.19103 1.21051 1.20772 1.23224 0.98061 1.04623 0.99340 1.22517 0.90414 1.03403 1.00979 1.21702 0.91872 0.82866 0.75061 1.90815 1.68375 1.32558 1.42165 0.88476 0.90134 0.90522 0.86268 0.86917 0.88885 0.87365 0.75138 0.85234 0.86828 0.92933 0.89518 0.90639 0.91447 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.64 9.81 59.85 0.59 1.22 16 2 N -0.56 -6.54 2.93 -123.17 -0.36 -6.90 16 3 C 0.52 5.55 7.48 -11.32 -0.08 5.47 16 4 O -0.50 -6.70 16.19 5.61 0.09 -6.61 16 5 C -0.15 -0.99 5.87 -27.81 -0.16 -1.15 16 6 C -0.13 -0.84 5.76 -26.48 -0.15 -0.99 16 7 C 0.13 1.45 2.99 -69.01 -0.21 1.24 16 8 H 0.14 1.47 7.48 -51.93 -0.39 1.08 16 9 N -1.12 -14.62 5.31 -5.82 -0.03 -14.65 16 10 S 2.59 49.34 5.36 -107.50 -0.58 48.76 16 11 O -0.97 -19.47 17.39 -57.54 -1.00 -20.47 16 12 O -0.94 -21.15 17.05 -57.54 -0.98 -22.13 16 13 C -0.54 -11.56 5.06 37.15 0.19 -11.37 16 14 C 0.04 0.98 1.33 -155.66 -0.21 0.77 16 15 C -0.50 -13.72 7.63 -34.44 -0.26 -13.98 16 16 H 0.07 1.96 7.82 -52.48 -0.41 1.54 16 17 C 0.08 2.10 5.44 -17.82 -0.10 2.00 16 18 N -0.88 -24.30 12.87 55.43 0.71 -23.59 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.22 -4.72 9.96 -26.73 -0.27 -4.99 16 24 C -0.13 -3.11 9.42 -26.73 -0.25 -3.36 16 25 C 0.50 6.37 6.88 -11.32 -0.08 6.30 16 26 O -0.47 -7.51 14.54 5.60 0.08 -7.43 16 27 H 0.10 1.02 6.73 -51.93 -0.35 0.67 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.11 0.67 6.79 -51.93 -0.35 0.32 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.41 4.43 7.26 -34.47 -0.25 4.18 16 35 H 0.13 2.92 8.14 -51.92 -0.42 2.50 16 36 H 0.11 2.22 6.41 -51.92 -0.33 1.88 16 37 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 38 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 40 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -35.35 352.36 -8.22 -43.57 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.45 Total: 6.44 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -0.99 Total: -18.85 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.32 Total: -45.14 kcal Atomic # 8 Polarization: -54.83 SS G_CDS: -1.81 Total: -56.64 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 49.34 SS G_CDS: -0.58 Total: 48.76 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.35 -8.22 -43.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425217416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.623 kcal (2) G-P(sol) polarization free energy of solvation -35.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds