Wall clock time and date at job start Tue Mar 31 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00367 * 2 1 4 4 H 1.48504 * 109.46994 * 270.00127 * 3 2 1 5 5 H 1.48502 * 109.46949 * 29.99735 * 3 2 1 6 6 H 1.48491 * 109.47281 * 150.00276 * 3 2 1 7 7 C 1.37883 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99877 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99740 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47338 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00222 * 179.97438 * 10 9 7 12 12 O 1.21581 * 119.99790 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99929 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00128 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47128 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.46957 * 304.99442 * 15 14 13 17 17 O 1.42901 * 109.47574 * 64.99436 * 15 14 13 18 18 C 1.52997 * 109.47012 * 184.99626 * 15 14 13 19 19 O 1.42899 * 109.47126 * 174.99485 * 18 15 14 20 20 C 1.35951 * 117.00028 * 179.97438 * 19 18 15 21 21 C 1.38721 * 120.01885 * 180.02562 * 20 19 18 22 22 C 1.38166 * 120.01137 * 179.72358 * 21 20 19 23 23 C 1.38413 * 120.05399 * 0.27952 * 22 21 20 24 24 F 1.35103 * 119.97861 * 179.97438 * 23 22 21 25 25 C 1.38640 * 120.03961 * 359.97438 * 23 22 21 26 26 F 1.35101 * 120.00610 * 180.02562 * 25 23 22 27 27 C 1.38362 * 119.98850 * 0.02562 * 25 23 22 28 28 H 0.97006 * 120.00062 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47498 * 60.00149 * 9 7 2 30 30 H 1.09003 * 109.47011 * 299.99934 * 9 7 2 31 31 H 0.96999 * 119.99467 * 359.97438 * 10 9 7 32 32 H 0.97000 * 120.00341 * 359.97438 * 13 11 10 33 33 H 1.08991 * 109.46990 * 59.99599 * 14 13 11 34 34 H 1.09003 * 109.46437 * 299.99620 * 14 13 11 35 35 H 0.96701 * 113.99453 * 60.00116 * 17 15 14 36 36 H 1.09006 * 109.46952 * 55.00117 * 18 15 14 37 37 H 1.09004 * 109.47213 * 295.00141 * 18 15 14 38 38 H 1.08002 * 119.99778 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.97174 * 180.25620 * 22 21 20 40 40 H 1.07996 * 120.02755 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5582 -5.1055 0.0009 13 7 2.6293 -5.9078 0.0005 14 6 2.1410 -7.2891 0.0005 15 6 3.3309 -8.2507 0.0005 16 1 3.9840 -8.0207 -0.8414 17 8 4.0595 -8.1072 1.2215 18 6 2.8244 -9.6889 -0.1251 19 8 3.9374 -10.5774 -0.2424 20 6 3.6592 -11.9027 -0.3628 21 6 4.6924 -12.8209 -0.4802 22 6 4.4096 -14.1683 -0.5968 23 6 3.0955 -14.6028 -0.6026 24 9 2.8207 -15.9206 -0.7173 25 6 2.0610 -13.6866 -0.4907 26 9 0.7786 -14.1115 -0.4959 27 6 2.3422 -12.3369 -0.3738 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8897 31 1 3.1565 -3.4355 -0.0009 32 1 3.5830 -5.7306 0.0001 33 1 1.5358 -7.4604 -0.8896 34 1 1.5351 -7.4601 0.8904 35 1 3.5393 -8.2969 2.0143 36 1 2.1949 -9.7763 -1.0107 37 1 2.2439 -9.9484 0.7603 38 1 5.7182 -12.4830 -0.4754 39 1 5.2146 -14.8829 -0.6840 40 1 1.5369 -11.6227 -0.2862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426433166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:25 Heat of formation + Delta-G solvation = -184.908867 kcal Electronic energy + Delta-G solvation = -26351.975269 eV Core-core repulsion = 21803.322623 eV Total energy + Delta-G solvation = -4548.652646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.89972 -48.96319 -40.78533 -39.43107 -38.29582 -37.09102 -34.40172 -33.87993 -32.33897 -31.58134 -31.13701 -29.69918 -27.47199 -25.91684 -23.85219 -23.04872 -22.49096 -22.05865 -20.21408 -19.24789 -18.19651 -18.11061 -17.98327 -17.20218 -16.98439 -16.71972 -16.57346 -16.01106 -15.57361 -15.40452 -15.35540 -14.98758 -14.73853 -14.67287 -14.53443 -14.50776 -13.95585 -13.62682 -13.51976 -13.04311 -12.88718 -12.63979 -12.57632 -11.97780 -11.94178 -11.73600 -11.35231 -11.31823 -10.97492 -10.89277 -10.59087 -10.31534 -9.70421 -9.50355 -9.38418 -8.89087 -8.74875 -8.71314 -7.80127 -6.16569 -4.23189 0.35209 0.45538 2.31016 2.78544 3.24091 3.24507 3.29934 3.31824 3.36292 3.74106 3.84498 3.95984 3.97884 4.23613 4.25300 4.33196 4.36588 4.40777 4.48500 4.72349 4.91798 4.99284 5.10896 5.14216 5.19685 5.25731 5.41007 5.48907 5.52410 5.66002 6.01713 6.62912 6.72823 7.06666 7.21837 7.47544 7.52656 7.54657 7.87388 8.01832 8.74299 8.90014 9.28476 9.45514 10.93633 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.037587 B = 0.001595 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.759003 B =17547.130210 C =18140.351384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.693 3.307 12 O -0.603 6.603 13 N -0.752 5.752 14 C 0.115 3.885 15 C 0.101 3.899 16 H 0.118 0.882 17 O -0.547 6.547 18 C 0.024 3.976 19 O -0.292 6.292 20 C 0.156 3.844 21 C -0.132 4.132 22 C -0.084 4.084 23 C 0.025 3.975 24 F -0.130 7.130 25 C 0.112 3.888 26 F -0.124 7.124 27 C -0.223 4.223 28 H 0.266 0.734 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.387 0.613 32 H 0.397 0.603 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.378 0.622 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.654 -28.786 -0.466 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.379 5.379 11 C 0.393 3.607 12 O -0.482 6.482 13 N -0.411 5.411 14 C -0.011 4.011 15 C 0.041 3.959 16 H 0.136 0.864 17 O -0.352 6.352 18 C -0.052 4.052 19 O -0.204 6.204 20 C 0.109 3.891 21 C -0.151 4.151 22 C -0.102 4.102 23 C 0.004 3.996 24 F -0.109 7.109 25 C 0.091 3.909 26 F -0.102 7.102 27 C -0.243 4.243 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.220 0.780 32 H 0.231 0.769 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.226 0.774 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.169 0.831 39 H 0.172 0.828 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.933 -28.602 -0.866 30.290 hybrid contribution 0.133 0.556 0.293 0.642 sum 10.066 -28.046 -0.573 29.804 Atomic orbital electron populations 1.69976 1.06100 1.27287 1.48917 1.24946 0.94918 0.99421 0.94739 0.86402 0.79600 0.82613 0.78197 1.20483 1.21015 1.19768 1.21230 0.93304 0.90419 1.53167 0.91899 1.18995 0.87773 0.81061 0.97627 1.45717 1.10907 1.04328 1.76962 1.16120 0.85077 0.81096 0.78416 1.90875 1.14251 1.84266 1.58812 1.44925 1.09265 1.04258 1.82606 1.21530 0.94936 0.81348 1.03301 1.22145 0.94298 0.89835 0.89596 0.86387 1.86656 1.41274 1.92113 1.15180 1.23652 0.88466 0.89950 1.03095 1.86198 1.34384 1.12954 1.86875 1.18757 0.91977 0.84202 0.94139 1.20400 0.99599 0.90452 1.04648 1.20908 0.94459 0.96230 0.98646 1.17562 0.93227 0.78135 1.10627 1.91531 1.94449 1.30979 1.93954 1.17364 0.78468 0.91984 1.03068 1.91560 1.34683 1.90372 1.93632 1.21173 0.97597 0.94759 1.10752 0.92455 0.95716 0.95717 0.78034 0.76901 0.90705 0.91222 0.77369 0.90036 0.90655 0.83145 0.82835 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.07 5.43 -5.19 -0.03 7.05 16 10 N -0.73 -15.27 5.55 -66.42 -0.37 -15.64 16 11 C 0.69 13.78 8.57 -86.92 -0.74 13.03 16 12 O -0.60 -14.58 16.34 5.29 0.09 -14.49 16 13 N -0.75 -10.28 5.51 -65.23 -0.36 -10.64 16 14 C 0.11 1.19 5.31 -4.04 -0.02 1.17 16 15 C 0.10 0.75 3.28 -26.73 -0.09 0.66 16 16 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 17 O -0.55 -4.56 13.25 -40.09 -0.53 -5.09 16 18 C 0.02 0.15 4.37 37.16 0.16 0.31 16 19 O -0.29 -2.20 10.10 -24.44 -0.25 -2.45 16 20 C 0.16 1.10 6.68 -39.24 -0.26 0.84 16 21 C -0.13 -0.77 9.98 -39.43 -0.39 -1.16 16 22 C -0.08 -0.47 10.02 -39.54 -0.40 -0.87 16 23 C 0.02 0.20 7.30 -39.37 -0.29 -0.09 16 24 F -0.13 -1.20 17.18 2.25 0.04 -1.16 16 25 C 0.11 0.94 7.30 -39.39 -0.29 0.65 16 26 F -0.12 -1.22 17.18 2.25 0.04 -1.18 16 27 C -0.22 -1.59 9.01 -39.38 -0.35 -1.94 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.39 6.96 8.34 -40.82 -0.34 6.62 16 32 H 0.40 4.55 8.49 -40.82 -0.35 4.20 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.38 2.08 9.05 45.56 0.41 2.49 16 36 H 0.08 0.40 7.65 -51.93 -0.40 0.00 16 37 H 0.08 0.35 7.67 -51.93 -0.40 -0.05 16 38 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.15 0.48 8.06 -52.49 -0.42 0.05 16 40 H 0.15 0.86 6.30 -52.49 -0.33 0.53 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -34.96 361.48 -7.19 -42.15 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -3.89 Total: 6.28 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -3.12 Total: 6.30 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.01 Total: -51.54 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.69 Total: -22.03 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.08 Total: -2.34 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.96 -7.19 -42.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426433166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.754 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds