Wall clock time and date at job start Tue Mar 31 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99622 * 2 1 4 4 H 1.48502 * 109.46913 * 269.99740 * 3 2 1 5 5 H 1.48498 * 109.47346 * 29.99596 * 3 2 1 6 6 H 1.48496 * 109.47280 * 149.99659 * 3 2 1 7 7 C 1.37875 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99507 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00032 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46708 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99511 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99970 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 17 17 O 1.42905 * 109.47264 * 299.99925 * 15 14 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 19 19 O 1.42905 * 109.47641 * 184.99974 * 18 15 14 20 20 C 1.35937 * 117.00075 * 179.97438 * 19 18 15 21 21 C 1.38727 * 120.02417 * 359.72896 * 20 19 18 22 22 C 1.38165 * 120.01576 * 179.78788 * 21 20 19 23 23 C 1.38402 * 120.05395 * 0.46577 * 22 21 20 24 24 F 1.35099 * 119.98295 * 179.76574 * 23 22 21 25 25 C 1.38659 * 120.04229 * 359.78280 * 23 22 21 26 26 F 1.35093 * 120.00868 * 180.02562 * 25 23 22 27 27 C 1.38358 * 119.97928 * 359.97438 * 25 23 22 28 28 H 0.96994 * 120.00630 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46995 * 60.00309 * 9 7 2 30 30 H 1.08994 * 109.46942 * 300.00079 * 9 7 2 31 31 H 0.97003 * 120.00113 * 0.02562 * 10 9 7 32 32 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 33 33 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 34 34 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 35 35 H 0.96696 * 114.00036 * 299.99911 * 17 15 14 36 36 H 1.09001 * 109.47563 * 305.00337 * 18 15 14 37 37 H 1.09004 * 109.47313 * 64.99993 * 18 15 14 38 38 H 1.08000 * 119.99373 * 359.97438 * 21 20 19 39 39 H 1.08004 * 119.97342 * 180.22375 * 22 21 20 40 40 H 1.08006 * 120.02249 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0015 11 6 1.7540 -4.8833 0.0019 12 8 0.5587 -5.1055 0.0029 13 7 2.6300 -5.9076 0.0022 14 6 2.1417 -7.2889 0.0020 15 6 3.3317 -8.2505 0.0018 16 1 3.9374 -8.0793 0.8917 17 8 4.1255 -8.0258 -1.1651 18 6 2.8219 -9.6930 0.0023 19 8 3.9286 -10.5894 0.1195 20 6 3.6466 -11.9191 0.1359 21 6 2.3313 -12.3510 0.0468 22 6 2.0453 -13.7026 0.0591 23 6 3.0695 -14.6269 0.1700 24 9 2.7877 -15.9481 0.1867 25 6 4.3846 -14.1977 0.2644 26 9 5.3838 -15.1004 0.3721 27 6 4.6732 -12.8447 0.2472 28 1 -0.4851 0.8399 -0.0004 29 1 0.6242 -2.5575 -0.8880 30 1 0.6249 -2.5563 0.8919 31 1 3.1570 -3.4353 0.0010 32 1 3.5836 -5.7304 0.0017 33 1 1.5359 -7.4602 0.8918 34 1 1.5364 -7.4602 -0.8881 35 1 3.6499 -8.1602 -1.9962 36 1 2.1453 -9.8390 0.8443 37 1 2.2909 -9.8910 -0.9289 38 1 1.5309 -11.6305 -0.0352 39 1 1.0213 -14.0382 -0.0139 40 1 5.6974 -12.5096 0.3202 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426433167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:28 Heat of formation + Delta-G solvation = -184.613468 kcal Electronic energy + Delta-G solvation = -26266.511211 eV Core-core repulsion = 21717.871374 eV Total energy + Delta-G solvation = -4548.639837 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.122 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.90674 -48.96886 -40.79970 -39.43899 -38.28194 -37.08400 -34.39659 -33.87263 -32.34892 -31.83242 -30.88224 -29.72556 -27.47929 -25.88841 -24.00202 -23.06319 -22.39169 -22.03999 -20.21496 -19.23667 -18.23772 -18.17530 -17.85153 -17.21881 -16.94489 -16.71798 -16.68406 -15.99351 -15.54470 -15.42289 -15.37483 -14.95968 -14.90200 -14.59008 -14.52510 -14.51221 -14.06744 -13.56379 -13.33695 -13.04165 -12.90644 -12.85941 -12.56775 -11.98212 -11.89632 -11.73822 -11.38744 -11.28097 -10.97647 -10.89803 -10.59088 -10.31936 -9.65801 -9.51223 -9.38867 -8.89638 -8.77374 -8.71721 -7.80663 -6.17017 -4.23657 0.33546 0.47003 2.24290 2.77798 3.21262 3.24047 3.30529 3.32897 3.39942 3.83773 3.85736 3.95527 3.96581 4.19439 4.25455 4.32972 4.37331 4.43405 4.56444 4.60960 4.80233 4.98600 5.10637 5.19240 5.20026 5.25964 5.36418 5.50119 5.52552 5.64675 6.02363 6.62806 6.72697 7.06343 7.21708 7.46910 7.52281 7.54049 7.87022 8.01398 8.73833 8.89514 9.27890 9.45053 10.93188 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.044322 B = 0.001537 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.582606 B =18214.877118 C =18722.078037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.693 3.307 12 O -0.603 6.603 13 N -0.752 5.752 14 C 0.115 3.885 15 C 0.100 3.900 16 H 0.118 0.882 17 O -0.547 6.547 18 C 0.027 3.973 19 O -0.294 6.294 20 C 0.156 3.844 21 C -0.192 4.192 22 C -0.081 4.081 23 C 0.025 3.975 24 F -0.130 7.130 25 C 0.110 3.890 26 F -0.122 7.122 27 C -0.163 4.163 28 H 0.266 0.734 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.388 0.612 32 H 0.398 0.602 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.378 0.622 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.996 -28.235 -0.280 29.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.379 5.379 11 C 0.393 3.607 12 O -0.483 6.483 13 N -0.411 5.411 14 C -0.011 4.011 15 C 0.040 3.960 16 H 0.136 0.864 17 O -0.352 6.352 18 C -0.049 4.049 19 O -0.206 6.206 20 C 0.109 3.891 21 C -0.211 4.211 22 C -0.100 4.100 23 C 0.005 3.995 24 F -0.109 7.109 25 C 0.090 3.910 26 F -0.101 7.101 27 C -0.183 4.183 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.220 0.780 32 H 0.232 0.768 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.226 0.774 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.353 -28.102 0.188 29.049 hybrid contribution 0.678 0.473 -0.362 0.903 sum 8.031 -27.629 -0.175 28.773 Atomic orbital electron populations 1.69974 1.06093 1.27294 1.48941 1.24944 0.94917 0.99417 0.94734 0.86403 0.79596 0.82613 0.78206 1.20476 1.21019 1.19773 1.21232 0.93309 0.90423 1.53148 0.91899 1.18995 0.87767 0.81066 0.97624 1.45721 1.10916 1.04330 1.76944 1.16120 0.85069 0.81097 0.78413 1.90873 1.14252 1.84272 1.58853 1.44912 1.09329 1.04230 1.82582 1.21515 0.94923 0.81381 1.03293 1.22157 0.93259 0.89501 0.91042 0.86433 1.86656 1.40750 1.92192 1.15615 1.23641 0.88563 0.89662 1.03082 1.86168 1.34950 1.12300 1.87210 1.18629 0.92318 0.83854 0.94273 1.21264 0.95960 0.96406 1.07485 1.20883 0.99222 0.91806 0.98096 1.17546 0.92188 0.79003 1.10755 1.91531 1.94094 1.30842 1.94440 1.17246 0.83560 0.86778 1.03419 1.91558 1.59193 1.66078 1.93250 1.20187 1.01011 0.89027 1.08030 0.92456 0.95721 0.95705 0.78022 0.76823 0.90653 0.91303 0.77364 0.89991 0.90614 0.83497 0.83177 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.62 9.28 -34.44 -0.32 -14.94 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.19 16 9 C 0.27 7.03 5.43 -5.19 -0.03 7.01 16 10 N -0.73 -15.16 5.55 -66.42 -0.37 -15.53 16 11 C 0.69 13.63 8.57 -86.92 -0.74 12.88 16 12 O -0.60 -14.41 16.34 5.29 0.09 -14.32 16 13 N -0.75 -10.12 5.45 -65.22 -0.36 -10.48 16 14 C 0.11 1.15 5.34 -4.04 -0.02 1.13 16 15 C 0.10 0.72 3.33 -26.74 -0.09 0.63 16 16 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 17 O -0.55 -4.50 13.05 -40.06 -0.52 -5.02 16 18 C 0.03 0.15 4.37 37.15 0.16 0.31 16 19 O -0.29 -2.22 10.10 -24.37 -0.25 -2.46 16 20 C 0.16 1.10 6.68 -39.24 -0.26 0.84 16 21 C -0.19 -1.07 9.04 -39.43 -0.36 -1.43 16 22 C -0.08 -0.48 10.02 -39.55 -0.40 -0.87 16 23 C 0.03 0.20 7.30 -39.37 -0.29 -0.09 16 24 F -0.13 -1.20 17.18 2.25 0.04 -1.16 16 25 C 0.11 0.91 7.30 -39.38 -0.29 0.62 16 26 F -0.12 -1.14 17.18 2.25 0.04 -1.10 16 27 C -0.16 -1.20 9.96 -39.38 -0.39 -1.60 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.39 6.93 8.34 -40.82 -0.34 6.59 16 32 H 0.40 4.53 8.36 -40.82 -0.34 4.19 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.38 2.04 9.05 45.56 0.41 2.45 16 36 H 0.08 0.34 7.65 -51.93 -0.40 -0.06 16 37 H 0.08 0.30 7.67 -51.93 -0.40 -0.10 16 38 H 0.15 0.51 6.29 -52.49 -0.33 0.18 16 39 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 40 H 0.16 0.99 8.06 -52.48 -0.42 0.56 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -34.71 361.17 -7.18 -41.89 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.89 Total: 6.09 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -3.12 Total: 6.14 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.01 Total: -51.16 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.68 Total: -21.81 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.08 Total: -2.27 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.71 -7.18 -41.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426433167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.720 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds