Wall clock time and date at job start Tue Mar 31 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34675 * 117.00050 * 2 1 4 4 O 1.21432 * 119.99535 * 0.02562 * 3 2 1 5 5 C 1.48063 * 119.99975 * 179.97438 * 3 2 1 6 6 C 1.39268 * 119.66519 * 180.02562 * 5 3 2 7 7 C 1.39698 * 118.91205 * 179.97438 * 6 5 3 8 8 C 1.48348 * 120.88214 * 179.97438 * 7 6 5 9 9 O 1.21832 * 120.00373 * 0.02562 * 8 7 6 10 10 N 1.33619 * 120.00110 * 180.02562 * 8 7 6 11 11 C 1.33101 * 120.00026 * 180.02562 * 10 8 7 12 12 C 1.41066 * 126.37365 * 0.02562 * 11 10 8 13 13 C 1.35092 * 108.24430 * 180.02562 * 12 11 10 14 14 N 1.36369 * 108.92071 * 359.97438 * 13 12 11 15 15 C 1.46496 * 125.85514 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.46952 * 84.97749 * 15 14 13 17 17 H 1.08001 * 119.99980 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99867 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00260 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99908 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47259 * 90.00054 * 20 18 16 22 22 H 1.48505 * 109.46914 * 210.00331 * 20 18 16 23 23 H 1.48502 * 109.46635 * 329.99685 * 20 18 16 24 24 N 1.37380 * 126.36763 * 179.71213 * 11 10 8 25 25 H 0.96995 * 126.35468 * 0.02562 * 24 11 10 26 26 C 1.39744 * 118.24049 * 359.97438 * 7 6 5 27 27 C 1.38498 * 119.20228 * 359.97438 * 26 7 6 28 28 N 1.31465 * 121.03843 * 359.74458 * 27 26 7 29 29 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47070 * 300.00034 * 1 2 3 31 31 H 1.09001 * 109.46626 * 60.00051 * 1 2 3 32 32 H 1.08009 * 120.54435 * 359.97438 * 6 5 3 33 33 H 1.08002 * 125.87557 * 359.97438 * 12 11 10 34 34 H 1.08000 * 125.54176 * 179.97438 * 13 12 11 35 35 H 1.09002 * 109.47224 * 204.97361 * 15 14 13 36 36 H 1.08991 * 109.47669 * 324.97627 * 15 14 13 37 37 H 0.97002 * 120.00381 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.39891 * 179.97438 * 26 7 6 39 39 H 1.08000 * 119.48233 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4020 2.2183 0.0005 5 6 3.5421 1.2774 0.0006 6 6 4.1671 2.5220 0.0011 7 6 5.5630 2.5767 0.0022 8 6 6.2739 3.8788 0.0022 9 8 5.6399 4.9191 0.0018 10 7 7.6098 3.9106 0.0028 11 6 8.2476 5.0788 0.0033 12 6 7.6516 6.3574 0.0039 13 6 8.6358 7.2828 0.0038 14 7 9.8417 6.6458 0.0037 15 6 11.1550 7.2949 0.0030 16 6 11.5506 7.6296 1.4182 17 1 10.8896 7.3838 2.2361 18 6 12.7563 8.2497 1.6685 19 7 13.5614 8.5485 0.6725 20 14 13.2470 8.6639 3.4227 21 1 13.9946 7.5232 4.0101 22 1 14.1087 9.8734 3.4231 23 1 12.0277 8.9246 4.2293 24 7 9.6089 5.2636 0.0094 25 1 10.2837 4.5669 0.0138 26 6 6.2720 1.3725 0.0032 27 6 5.5730 0.1768 0.0037 28 7 4.2584 0.1602 0.0082 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 3.5822 3.4300 0.0007 33 1 6.5911 6.5613 0.0036 34 1 8.4913 8.3530 0.0037 35 1 11.8933 6.6206 -0.4308 36 1 11.1077 8.2101 -0.5871 37 1 14.4095 8.9851 0.8486 38 1 7.3520 1.3741 0.0037 39 1 6.1164 -0.7565 0.0041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429404628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:58 Heat of formation + Delta-G solvation = 26.464611 kcal Electronic energy + Delta-G solvation = -25881.323395 eV Core-core repulsion = 21792.525777 eV Total energy + Delta-G solvation = -4088.797618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09824 -40.89607 -39.78982 -38.32537 -36.63791 -34.44400 -33.15615 -32.80796 -31.71803 -31.26436 -30.74207 -28.10200 -27.05514 -25.22492 -24.47058 -23.18200 -22.12270 -21.54986 -21.34780 -19.74064 -17.92380 -17.58161 -17.12548 -16.88932 -16.58670 -16.33789 -16.06641 -15.29473 -15.22169 -15.03845 -14.84359 -14.42125 -14.27159 -14.22426 -13.81186 -13.71207 -13.20129 -13.11554 -12.94262 -12.62796 -12.37547 -12.11724 -11.97519 -11.46202 -11.14191 -10.99369 -10.96600 -10.62287 -10.57120 -10.03364 -9.87764 -9.72561 -9.61173 -9.38370 -9.23570 -9.01085 -8.64703 -7.18529 -6.60630 -4.75960 0.35870 0.75408 1.58134 1.86042 2.23433 2.38309 2.87688 2.99799 3.08471 3.11978 3.61756 3.88097 3.98414 4.02975 4.40161 4.44707 4.64845 4.72420 4.81110 4.87753 4.95842 4.97213 5.08394 5.19743 5.35497 5.43554 5.59894 5.68053 5.78712 6.03184 6.08289 6.31341 6.35261 6.41887 6.42557 6.58891 7.23748 7.29246 7.34607 7.39306 7.42010 7.71929 7.73064 8.02152 8.32347 8.95495 9.03946 10.43199 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.001938 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.233457 B =14445.564897 C =14663.720722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.336 6.336 3 C 0.527 3.473 4 O -0.497 6.497 5 C 0.071 3.929 6 C -0.060 4.060 7 C -0.057 4.057 8 C 0.531 3.469 9 O -0.570 6.570 10 N -0.692 5.692 11 C 0.469 3.531 12 C -0.331 4.331 13 C 0.167 3.833 14 N -0.334 5.334 15 C 0.252 3.748 16 C -0.562 4.562 17 H 0.070 0.930 18 C 0.071 3.929 19 N -0.885 5.885 20 Si 0.910 3.090 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.269 1.269 24 N -0.461 5.461 25 H 0.447 0.553 26 C -0.082 4.082 27 C 0.082 3.918 28 N -0.430 5.430 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.158 0.842 33 H 0.185 0.815 34 H 0.191 0.809 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.273 0.727 38 H 0.160 0.840 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.800 -12.058 -2.710 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.251 6.251 3 C 0.370 3.630 4 O -0.384 6.384 5 C -0.065 4.065 6 C -0.081 4.081 7 C -0.068 4.068 8 C 0.316 3.684 9 O -0.452 6.452 10 N -0.456 5.456 11 C 0.220 3.780 12 C -0.363 4.363 13 C 0.020 3.980 14 N -0.118 5.118 15 C 0.136 3.864 16 C -0.600 4.600 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.521 5.521 20 Si 0.737 3.263 21 H -0.201 1.201 22 H -0.206 1.206 23 H -0.194 1.194 24 N -0.182 5.182 25 H 0.295 0.705 26 C -0.103 4.103 27 C -0.078 4.078 28 N -0.142 5.142 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.176 0.824 33 H 0.202 0.798 34 H 0.208 0.792 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.178 0.822 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.870 -12.588 -2.763 18.214 hybrid contribution 0.754 1.279 0.943 1.759 sum -12.116 -11.309 -1.821 16.673 Atomic orbital electron populations 1.23340 0.76212 1.03858 1.02654 1.86673 1.23087 1.31800 1.83548 1.20780 0.87844 0.81702 0.72680 1.90870 1.65859 1.36132 1.45527 1.19774 0.90621 0.89882 1.06217 1.22208 0.94499 0.98507 0.92847 1.20277 0.92493 0.95140 0.98872 1.18563 0.85843 0.86624 0.77401 1.90642 1.71446 1.33757 1.49311 1.68636 1.09780 1.22974 1.44244 1.19047 0.81989 0.91824 0.85101 1.22481 1.01927 0.90480 1.21415 1.22942 0.83103 0.99671 0.92302 1.48191 1.09293 0.92345 1.62019 1.20160 0.73432 0.93077 0.99751 1.21382 1.04823 1.42213 0.91555 0.91142 1.24951 0.95479 0.94391 0.98595 1.69888 1.10928 1.39790 1.31514 0.86274 0.78882 0.78296 0.82872 1.20147 1.20605 1.19396 1.44610 1.06550 0.98007 1.69069 0.70535 1.22886 1.03205 0.91737 0.92455 1.22889 0.88957 0.98533 0.97465 1.67462 1.08828 1.30119 1.07838 0.87863 0.91755 0.91767 0.82429 0.79784 0.79169 0.92849 0.91094 0.91721 0.82247 0.81377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.34 -4.07 10.38 -40.43 -0.42 -4.49 16 3 C 0.53 7.37 7.95 34.76 0.28 7.65 16 4 O -0.50 -7.74 16.11 -19.21 -0.31 -8.05 16 5 C 0.07 1.00 6.75 -83.07 -0.56 0.44 16 6 C -0.06 -0.89 9.19 -38.65 -0.36 -1.25 16 7 C -0.06 -0.87 5.91 -104.63 -0.62 -1.49 16 8 C 0.53 9.68 7.71 -12.61 -0.10 9.59 16 9 O -0.57 -11.56 13.37 5.07 0.07 -11.49 16 10 N -0.69 -12.26 9.77 -12.14 -0.12 -12.38 16 11 C 0.47 8.27 8.07 -155.24 -1.25 7.02 16 12 C -0.33 -5.67 9.52 -39.63 -0.38 -6.05 16 13 C 0.17 2.57 11.46 -16.65 -0.19 2.38 16 14 N -0.33 -5.67 3.63 -62.23 -0.23 -5.90 16 15 C 0.25 4.89 6.19 -5.19 -0.03 4.86 16 16 C -0.56 -12.70 9.39 -34.44 -0.32 -13.02 16 17 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 18 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.88 -21.64 13.29 55.43 0.74 -20.91 16 20 Si 0.91 18.61 29.54 -169.99 -5.02 13.59 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 N -0.46 -7.41 7.38 31.32 0.23 -7.18 16 25 H 0.45 6.17 8.96 -182.55 -1.64 4.53 16 26 C -0.08 -1.01 9.67 -38.92 -0.38 -1.38 16 27 C 0.08 0.89 11.17 -17.61 -0.20 0.69 16 28 N -0.43 -5.68 10.09 -9.87 -0.10 -5.78 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.16 2.47 7.33 -52.48 -0.38 2.09 16 33 H 0.19 3.33 5.77 -52.49 -0.30 3.02 16 34 H 0.19 2.27 8.06 -52.49 -0.42 1.84 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 38 H 0.16 1.75 7.64 -52.49 -0.40 1.35 16 39 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 356.50 15.07 5.37 5.37 Total: -1.00 -29.67 356.50 -8.15 -37.82 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.23 Total: 7.03 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: -3.13 Total: 12.35 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.52 Total: -52.14 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.66 Total: -24.03 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.67 -8.15 -37.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429404628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.285 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds