Wall clock time and date at job start Tue Mar 31 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48498 * 109.47468 * 275.41487 * 3 2 1 5 5 H 1.48498 * 109.46946 * 35.41964 * 3 2 1 6 6 H 1.48502 * 109.46971 * 155.41310 * 3 2 1 7 7 C 1.39937 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 341.72954 * 7 2 1 9 9 C 1.41434 * 120.00484 * 161.73326 * 7 2 1 10 10 C 1.40792 * 120.17492 * 330.17784 * 9 7 2 11 11 C 1.37705 * 120.04071 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.41512 * 359.78480 * 11 10 9 13 13 C 1.39887 * 120.35514 * 0.47019 * 12 11 10 14 14 C 1.47883 * 120.02590 * 179.78693 * 13 12 11 15 15 O 1.21547 * 119.99759 * 179.72832 * 14 13 12 16 16 N 1.34771 * 119.99933 * 359.72167 * 14 13 12 17 17 C 1.46500 * 120.00069 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47636 * 180.02562 * 17 16 14 19 19 C 1.35350 * 126.75208 * 95.23662 * 18 17 16 20 20 N 1.35317 * 106.17464 * 180.12985 * 19 18 17 21 21 C 1.46498 * 125.86690 * 179.90878 * 20 19 18 22 22 C 1.50703 * 109.46747 * 124.71925 * 21 20 19 23 23 O 1.20824 * 120.00289 * 359.97438 * 22 21 20 24 24 O 1.34231 * 119.99342 * 179.72545 * 22 21 20 25 25 N 1.28720 * 108.26297 * 359.64744 * 20 19 18 26 26 N 1.28639 * 110.17681 * 0.22517 * 25 20 19 27 27 C 1.39038 * 119.94518 * 359.51101 * 13 12 11 28 28 H 0.96995 * 119.99717 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.97921 * 0.02562 * 10 9 7 30 30 H 1.08008 * 119.79856 * 180.02562 * 11 10 9 31 31 H 1.07998 * 119.82916 * 180.23229 * 12 11 10 32 32 H 0.97004 * 120.00221 * 0.02562 * 16 14 13 33 33 H 1.09001 * 109.47075 * 59.99670 * 17 16 14 34 34 H 1.09004 * 109.47049 * 300.00474 * 17 16 14 35 35 H 1.08002 * 126.91370 * 0.03278 * 19 18 17 36 36 H 1.09000 * 109.47587 * 4.71846 * 21 20 19 37 37 H 1.08998 * 109.46969 * 244.71686 * 21 20 19 38 38 H 0.96708 * 116.99622 * 180.27750 * 24 22 21 39 39 H 1.08004 * 120.19616 * 180.23146 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1125 -1.3938 5 1 1.5016 2.6169 0.8114 6 1 3.5923 1.4098 0.5825 7 6 2.0080 -1.2119 -0.0005 8 1 1.5088 -2.1238 0.2923 9 6 3.3689 -1.2427 -0.3845 10 6 3.8625 -0.3099 -1.3164 11 6 5.1881 -0.3421 -1.6879 12 6 6.0445 -1.2849 -1.1471 13 6 5.5709 -2.2230 -0.2238 14 6 6.4915 -3.2304 0.3460 15 8 6.0805 -4.0422 1.1519 16 7 7.7860 -3.2485 -0.0286 17 6 8.6978 -4.2469 0.5354 18 6 10.0759 -4.0519 -0.0424 19 6 11.0921 -3.3465 0.5071 20 7 12.1288 -3.4436 -0.3572 21 6 13.4500 -2.8347 -0.1846 22 6 14.5108 -3.9010 -0.2800 23 8 14.1954 -5.0514 -0.4720 24 8 15.8062 -3.5717 -0.1567 25 7 11.7563 -4.1674 -1.3543 26 7 10.5370 -4.5458 -1.1969 27 6 4.2353 -2.2039 0.1621 28 1 -0.4849 0.8400 0.0004 29 1 3.2013 0.4318 -1.7397 30 1 5.5628 0.3756 -2.4028 31 1 7.0832 -1.2992 -1.4423 32 1 8.1140 -2.6005 -0.6716 33 1 8.3388 -5.2464 0.2904 34 1 8.7386 -4.1309 1.6185 35 1 11.0779 -2.8123 1.4456 36 1 13.5042 -2.3548 0.7926 37 1 13.6118 -2.0905 -0.9643 38 1 16.4504 -4.2893 -0.2292 39 1 3.8662 -2.9239 0.8775 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439718681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:59 Heat of formation + Delta-G solvation = 3.389759 kcal Electronic energy + Delta-G solvation = -25997.245523 eV Core-core repulsion = 21907.447304 eV Total energy + Delta-G solvation = -4089.798219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.73744 -40.89199 -39.40914 -37.35077 -36.97593 -35.57598 -34.47493 -33.68095 -31.77579 -30.55605 -30.03078 -29.74386 -26.85242 -25.11814 -23.88251 -22.96616 -22.11492 -21.28961 -20.65930 -20.03490 -19.00968 -18.29210 -17.80203 -17.39459 -16.82007 -16.35927 -16.18443 -15.59726 -15.48449 -15.38682 -14.67866 -14.67071 -14.09019 -13.90259 -13.73849 -13.61423 -13.19079 -12.79358 -12.74707 -12.69901 -12.28834 -12.01569 -11.94129 -11.59959 -11.53891 -11.17247 -11.04554 -10.77747 -10.62430 -10.53930 -10.02540 -9.82184 -9.69026 -9.38116 -9.11794 -8.87934 -7.86518 -7.75522 -7.00143 -4.54722 0.99232 1.34460 1.48109 1.91615 2.07858 2.30227 2.51988 3.05318 3.17100 3.25219 3.59255 3.61896 3.72624 3.93001 3.98739 4.11933 4.29958 4.41706 4.48863 4.69272 5.02724 5.28932 5.33286 5.59237 5.69509 5.69961 5.81060 5.87817 5.98045 6.03233 6.38912 6.59470 6.66947 6.70130 6.98020 7.04969 7.21237 7.40998 7.50198 7.74940 7.78859 8.00524 8.12216 8.28815 8.53589 8.67283 8.72589 10.02038 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.028620 B = 0.002056 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.099906 B =13612.715712 C =14149.004132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.442 4.442 8 H 0.094 0.906 9 C 0.081 3.919 10 C -0.221 4.221 11 C -0.084 4.084 12 C -0.215 4.215 13 C -0.107 4.107 14 C 0.567 3.433 15 O -0.546 6.546 16 N -0.730 5.730 17 C 0.209 3.791 18 C -0.030 4.030 19 C -0.025 4.025 20 N -0.298 5.298 21 C 0.130 3.870 22 C 0.466 3.534 23 O -0.481 6.481 24 O -0.510 6.510 25 N -0.058 5.058 26 N -0.243 5.243 27 C -0.135 4.135 28 H 0.286 0.714 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.402 0.598 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.199 0.801 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.422 0.578 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.556 0.598 1.757 28.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.470 4.470 8 H 0.112 0.888 9 C 0.078 3.922 10 C -0.240 4.240 11 C -0.102 4.102 12 C -0.235 4.235 13 C -0.110 4.110 14 C 0.357 3.643 15 O -0.424 6.424 16 N -0.384 5.384 17 C 0.083 3.917 18 C -0.167 4.167 19 C -0.175 4.175 20 N -0.092 5.092 21 C 0.006 3.994 22 C 0.305 3.695 23 O -0.365 6.365 24 O -0.323 6.323 25 N -0.038 5.038 26 N -0.111 5.111 27 C -0.155 4.155 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.237 0.763 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.216 0.784 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.282 0.718 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 28.047 -0.552 1.008 28.070 hybrid contribution 0.794 1.173 0.577 1.529 sum 28.841 0.620 1.585 28.892 Atomic orbital electron populations 1.69693 1.08089 1.30363 1.34553 1.26172 0.94759 1.01753 0.90964 0.86308 0.81359 0.79750 0.78837 1.19582 1.21695 1.16691 1.19521 0.92919 0.96323 1.38254 0.88807 1.17703 0.93164 0.91088 0.90212 1.21177 0.95662 1.04273 1.02929 1.20507 0.93753 0.97411 0.98510 1.20383 0.97949 1.00651 1.04540 1.19393 0.94219 0.96908 1.00498 1.18754 0.81079 0.83970 0.80511 1.90709 1.76591 1.40636 1.34480 1.45924 1.09373 1.35427 1.47674 1.19327 0.81117 0.94094 0.97120 1.22025 0.98189 1.01772 0.94714 1.23495 0.87824 1.06519 0.99663 1.46821 1.10956 1.35761 1.15639 1.21246 0.76121 0.93078 1.08934 1.22910 0.83369 0.89319 0.73928 1.90897 1.82309 1.21095 1.42228 1.84433 1.16975 1.46346 1.84593 1.78481 1.08206 1.07380 1.09730 1.75193 1.01334 1.18570 1.16053 1.21277 0.91019 1.01897 1.01336 0.90333 0.87902 0.88333 0.88710 0.76255 0.89546 0.89603 0.78419 0.83103 0.83699 0.71779 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.09 13.93 55.55 0.77 -20.32 16 2 C 0.08 2.14 5.40 -17.34 -0.09 2.04 16 3 Si 0.91 20.18 24.52 -169.99 -4.17 16.01 16 4 H -0.27 -5.75 6.71 56.52 0.38 -5.37 16 5 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.24 -5.50 6.86 56.52 0.39 -5.11 16 7 C -0.44 -11.84 9.57 -37.73 -0.36 -12.20 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 9 C 0.08 2.04 5.10 -106.87 -0.55 1.50 16 10 C -0.22 -5.13 7.17 -38.81 -0.28 -5.41 16 11 C -0.08 -1.70 10.01 -39.73 -0.40 -2.10 16 12 C -0.22 -4.15 9.55 -38.91 -0.37 -4.52 16 13 C -0.11 -2.27 5.87 -105.04 -0.62 -2.88 16 14 C 0.57 10.93 7.77 -12.31 -0.10 10.83 16 15 O -0.55 -12.02 16.33 5.32 0.09 -11.94 16 16 N -0.73 -10.79 5.50 -62.42 -0.34 -11.14 16 17 C 0.21 2.62 6.23 -5.19 -0.03 2.59 16 18 C -0.03 -0.35 6.62 -82.78 -0.55 -0.89 16 19 C -0.03 -0.20 11.50 -17.04 -0.20 -0.39 16 20 N -0.30 -2.44 3.20 -62.44 -0.20 -2.64 16 21 C 0.13 0.40 7.05 -5.19 -0.04 0.36 16 22 C 0.47 2.53 8.34 36.01 0.30 2.83 16 23 O -0.48 -5.09 16.43 -18.75 -0.31 -5.40 16 24 O -0.51 -1.28 13.42 -39.26 -0.53 -1.80 16 25 N -0.06 -0.74 12.13 60.35 0.73 -0.01 16 26 N -0.24 -3.44 12.41 33.29 0.41 -3.03 16 27 C -0.14 -3.23 9.34 -38.44 -0.36 -3.59 16 28 H 0.29 6.77 8.30 -40.82 -0.34 6.44 16 29 H 0.10 2.37 4.72 -52.48 -0.25 2.12 16 30 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.09 1.50 6.38 -52.49 -0.33 1.16 16 32 H 0.40 5.38 6.48 -40.82 -0.26 5.11 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.20 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.15 -0.17 8.07 -51.93 -0.42 -0.59 16 37 H 0.15 0.10 8.14 -51.93 -0.42 -0.32 16 38 H 0.42 -0.35 9.10 45.56 0.41 0.07 16 39 H 0.12 2.82 7.64 -52.48 -0.40 2.42 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -36.75 347.34 -4.89 -41.65 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -2.96 Total: 5.22 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -3.63 Total: -11.84 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 1.38 Total: -37.13 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.75 Total: -19.14 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.17 Total: 16.01 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.75 -4.89 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439718681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.035 kcal (2) G-P(sol) polarization free energy of solvation -36.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds