Wall clock time and date at job start Tue Mar 31 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00294 * 2 1 4 4 H 1.48501 * 109.47295 * 270.00206 * 3 2 1 5 5 H 1.48506 * 109.46899 * 29.99597 * 3 2 1 6 6 H 1.48493 * 109.47560 * 149.99407 * 3 2 1 7 7 C 1.38714 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99812 * 180.02562 * 7 2 1 9 9 O 1.34789 * 120.00497 * 0.02562 * 7 2 1 10 10 C 1.35566 * 117.00375 * 185.06082 * 9 7 2 11 11 C 1.39187 * 119.89649 * 354.35585 * 10 9 7 12 12 C 1.37593 * 120.09946 * 180.02562 * 11 10 9 13 13 C 1.40025 * 119.90070 * 359.97438 * 12 11 10 14 14 C 1.46961 * 120.10365 * 180.02562 * 13 12 11 15 15 C 1.35024 * 120.00104 * 136.68269 * 14 13 12 16 16 C 1.46256 * 119.99889 * 348.68479 * 15 14 13 17 17 O 1.21727 * 120.00030 * 353.21320 * 16 15 14 18 18 N 1.34768 * 120.00170 * 173.21053 * 16 15 14 19 19 C 1.46504 * 120.00378 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47282 * 180.02562 * 19 18 16 21 21 N 1.29035 * 125.11767 * 89.99835 * 20 19 18 22 22 N 1.40287 * 108.09726 * 179.97438 * 21 20 19 23 23 H 0.97005 * 126.77440 * 179.97438 * 22 21 20 24 24 C 1.37010 * 106.45614 * 0.02562 * 22 21 20 25 25 N 1.30686 * 126.58452 * 180.02562 * 24 22 21 26 26 O 1.34843 * 125.11684 * 269.99827 * 20 19 18 27 27 C 1.40024 * 119.79860 * 0.27713 * 13 12 11 28 28 C 1.37608 * 119.89323 * 359.42492 * 27 13 12 29 29 H 0.97001 * 119.99841 * 0.02562 * 1 2 3 30 30 H 1.07996 * 119.94534 * 359.97438 * 11 10 9 31 31 H 1.07998 * 120.05059 * 180.02562 * 12 11 10 32 32 H 1.07997 * 119.99843 * 316.68888 * 14 13 12 33 33 H 1.07998 * 119.99980 * 168.68568 * 15 14 13 34 34 H 0.97007 * 120.00158 * 0.02562 * 18 16 15 35 35 H 1.08996 * 109.47146 * 59.99945 * 19 18 16 36 36 H 1.09004 * 109.46693 * 300.00146 * 19 18 16 37 37 H 0.97002 * 119.99658 * 179.97438 * 25 24 22 38 38 H 1.07998 * 120.05341 * 179.72189 * 27 13 12 39 39 H 1.08000 * 119.94597 * 180.27738 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0086 -1.2013 0.0005 8 1 3.0887 -1.2014 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0689 -3.5033 0.1076 11 6 3.4590 -3.4341 0.0926 12 6 4.2082 -4.5831 0.2004 13 6 3.5702 -5.8232 0.3261 14 6 4.3661 -7.0532 0.4421 15 6 4.0213 -7.9980 1.3431 16 6 3.0191 -7.7016 2.3663 17 8 2.5865 -6.5700 2.4848 18 7 2.5746 -8.6813 3.1779 19 6 1.5703 -8.3846 4.2025 20 6 1.2476 -9.6416 4.9686 21 7 1.8570 -10.0384 6.0345 22 7 1.2704 -11.2435 6.4489 23 1 1.5200 -11.7757 7.2205 24 6 0.2761 -11.5211 5.5480 25 7 -0.5220 -12.5558 5.5631 26 8 0.2786 -10.5211 4.6432 27 6 2.1715 -5.8884 0.3354 28 6 1.4304 -4.7335 0.2332 29 1 -0.4850 0.8401 -0.0004 30 1 3.9501 -2.4773 -0.0048 31 1 5.2867 -4.5285 0.1891 32 1 5.2268 -7.2014 -0.1931 33 1 4.4855 -8.9725 1.3082 34 1 2.9195 -9.5831 3.0838 35 1 0.6658 -8.0068 3.7260 36 1 1.9615 -7.6323 4.8875 37 1 -1.1968 -12.6578 4.8738 38 1 1.6752 -6.8432 0.4276 39 1 0.3516 -4.7824 0.2448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492754749.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:08 Heat of formation + Delta-G solvation = 57.347992 kcal Electronic energy + Delta-G solvation = -26194.880997 eV Core-core repulsion = 22107.422583 eV Total energy + Delta-G solvation = -4087.458414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.51167 -39.91175 -38.77701 -36.71273 -36.07591 -35.64123 -34.30773 -33.13225 -32.17702 -30.95929 -30.15916 -28.57666 -27.31324 -25.44408 -23.71779 -23.10983 -22.29093 -21.82206 -21.07103 -19.71558 -18.95203 -17.97610 -17.60536 -17.52557 -17.28443 -16.69202 -16.11452 -15.50249 -15.10253 -15.00490 -14.57684 -14.36289 -14.05263 -13.75585 -13.52733 -13.35588 -13.19413 -12.94408 -12.85675 -12.54469 -12.29090 -12.22617 -11.98713 -11.72097 -11.41972 -11.04479 -10.78391 -10.73360 -10.65544 -10.43696 -9.68578 -9.49498 -9.32771 -9.19561 -8.84325 -8.73079 -7.97697 -6.91312 -6.48517 -4.04148 0.94485 1.14843 1.57991 1.79355 2.09743 2.38282 2.64197 3.12101 3.13450 3.17015 3.17920 3.47079 3.66500 3.95030 4.47830 4.56833 4.65826 4.92012 4.96963 5.07914 5.16703 5.20083 5.31763 5.36540 5.53991 5.69906 5.80232 6.07552 6.20804 6.25051 6.38416 6.54221 6.58103 6.74359 6.78103 6.99328 7.09205 7.29923 7.36423 7.43215 7.47284 7.65902 7.88266 7.98076 8.30425 8.97107 9.68385 10.69146 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.002211 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.311094 B =12662.307153 C =13530.965053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.172 3.828 11 C -0.251 4.251 12 C -0.039 4.039 13 C -0.194 4.194 14 C 0.036 3.964 15 C -0.270 4.270 16 C 0.547 3.453 17 O -0.503 6.503 18 N -0.736 5.736 19 C 0.212 3.788 20 C 0.232 3.768 21 N -0.240 5.240 22 N -0.543 5.543 23 H 0.465 0.535 24 C 0.518 3.482 25 N -0.717 5.717 26 O -0.290 6.290 27 C 0.011 3.989 28 C -0.202 4.202 29 H 0.271 0.729 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.400 0.600 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.362 0.638 38 H 0.102 0.898 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.254 -20.307 7.181 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.112 0.888 9 O -0.073 6.073 10 C 0.117 3.883 11 C -0.270 4.270 12 C -0.058 4.058 13 C -0.195 4.195 14 C 0.016 3.984 15 C -0.291 4.291 16 C 0.337 3.663 17 O -0.378 6.378 18 N -0.393 5.393 19 C 0.087 3.913 20 C 0.002 3.998 21 N -0.069 5.069 22 N -0.290 5.290 23 H 0.315 0.685 24 C 0.201 3.799 25 N -0.377 5.377 26 O -0.175 6.175 27 C -0.008 4.008 28 C -0.222 4.222 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.234 0.766 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.182 0.818 38 H 0.120 0.880 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.988 -19.659 8.275 22.154 hybrid contribution -0.069 0.125 -0.612 0.628 sum 5.920 -19.534 7.663 21.803 Atomic orbital electron populations 1.70025 1.06037 1.27821 1.45408 1.25337 0.95858 0.98953 0.96445 0.85689 0.78975 0.79922 0.78735 1.19828 1.20216 1.19107 1.21402 0.91934 0.80750 1.52501 0.88836 1.83905 1.34814 1.11686 1.76940 1.19539 0.90270 0.87750 0.90788 1.20962 0.93661 0.98831 1.13533 1.20745 0.97923 0.91537 0.95564 1.18295 0.93028 0.92249 1.15969 1.22365 0.93634 0.91118 0.91259 1.22465 1.05241 1.01289 1.00101 1.18501 0.81773 0.84356 0.81633 1.91041 1.56843 1.20207 1.69735 1.45925 1.43912 1.13323 1.36108 1.19693 0.95119 0.86324 0.90187 1.26399 0.86281 0.94049 0.93045 1.77066 1.19286 0.98045 1.12515 1.46306 1.31971 1.21204 1.29517 0.68458 1.22692 0.90181 0.84598 0.82416 1.70327 1.16587 1.15375 1.35449 1.85371 1.50722 1.31804 1.49594 1.20446 0.92066 0.96209 0.92068 1.20011 0.99340 0.90219 1.12598 0.91913 0.85626 0.87558 0.85885 0.85962 0.76557 0.87295 0.86490 0.81771 0.88030 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.89 9.48 30.91 0.29 -10.60 16 8 H 0.09 2.41 5.18 -52.49 -0.27 2.14 16 9 O -0.17 -4.92 9.74 0.73 0.01 -4.92 16 10 C 0.17 4.23 6.66 -38.88 -0.26 3.97 16 11 C -0.25 -5.52 9.14 -39.46 -0.36 -5.88 16 12 C -0.04 -0.73 9.78 -39.15 -0.38 -1.11 16 13 C -0.19 -3.36 4.54 -105.03 -0.48 -3.83 16 14 C 0.04 0.46 9.80 -37.19 -0.36 0.09 16 15 C -0.27 -2.98 9.90 -37.50 -0.37 -3.35 16 16 C 0.55 6.93 6.77 -13.04 -0.09 6.84 16 17 O -0.50 -8.66 12.18 5.17 0.06 -8.60 16 18 N -0.74 -6.67 5.54 -62.93 -0.35 -7.02 16 19 C 0.21 1.83 6.30 -5.19 -0.03 1.80 16 20 C 0.23 1.98 7.70 -13.45 -0.10 1.88 16 21 N -0.24 -2.10 12.63 32.45 0.41 -1.69 16 22 N -0.54 -4.22 7.55 29.59 0.22 -3.99 16 23 H 0.46 2.42 8.96 -182.45 -1.64 0.79 16 24 C 0.52 4.80 9.64 -88.40 -0.85 3.95 16 25 N -0.72 -6.81 14.16 29.59 0.42 -6.39 16 26 O -0.29 -2.71 10.74 2.68 0.03 -2.69 16 27 C 0.01 0.20 6.59 -39.14 -0.26 -0.06 16 28 C -0.20 -4.44 9.97 -39.47 -0.39 -4.83 16 29 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.13 2.75 5.62 -52.49 -0.29 2.45 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.40 2.71 8.44 -40.82 -0.34 2.36 16 35 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.36 2.98 8.92 -40.82 -0.36 2.61 16 38 H 0.10 1.69 7.02 -52.49 -0.37 1.33 16 39 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -34.01 349.84 -6.89 -40.90 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.95 Total: 8.23 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -3.75 Total: -10.16 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 1.46 Total: -43.43 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.10 Total: -16.20 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.01 -6.89 -40.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492754749.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.243 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds