Wall clock time and date at job start Tue Mar 31 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65604 * 119.99626 * 2 1 4 4 O 1.42094 * 106.40396 * 311.46066 * 3 2 1 5 5 O 1.42105 * 106.39655 * 178.54035 * 3 2 1 6 6 C 1.76199 * 107.21794 * 65.00284 * 3 2 1 7 7 C 1.35126 * 125.61770 * 89.99578 * 6 3 2 8 8 C 1.40370 * 107.11409 * 180.02562 * 7 6 3 9 9 C 1.36540 * 106.70954 * 0.24372 * 8 7 6 10 10 C 1.46658 * 125.98944 * 179.74114 * 9 8 7 11 11 O 1.21689 * 120.00040 * 353.85009 * 10 9 8 12 12 N 1.34774 * 119.99729 * 173.85123 * 10 9 8 13 13 C 1.46498 * 120.00242 * 4.31099 * 12 10 9 14 14 C 1.50700 * 109.47031 * 83.43175 * 13 12 10 15 15 H 1.08001 * 120.00059 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99853 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00200 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99792 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47208 * 90.00185 * 18 16 14 20 20 H 1.48503 * 109.46841 * 209.99967 * 18 16 14 21 21 H 1.48494 * 109.47113 * 329.99992 * 18 16 14 22 22 C 1.46502 * 119.99646 * 184.31071 * 12 10 9 23 23 C 1.52999 * 109.47112 * 124.66806 * 22 12 10 24 24 C 1.53003 * 109.47064 * 244.66749 * 22 12 10 25 25 O 1.33936 * 125.61172 * 270.02073 * 6 3 2 26 26 H 1.08996 * 109.46794 * 300.00061 * 1 2 3 27 27 H 1.09002 * 109.47207 * 60.00010 * 1 2 3 28 28 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 29 29 H 0.96998 * 119.99910 * 180.02562 * 2 1 3 30 30 H 1.08003 * 126.44529 * 0.02562 * 7 6 3 31 31 H 1.07996 * 126.64468 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.46933 * 203.42864 * 13 12 10 33 33 H 1.08999 * 109.47461 * 323.42774 * 13 12 10 34 34 H 0.96998 * 120.00193 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.47416 * 4.66776 * 22 12 10 36 36 H 1.09006 * 109.47291 * 60.00285 * 23 22 12 37 37 H 1.09005 * 109.47331 * 179.97438 * 23 22 12 38 38 H 1.08996 * 109.47380 * 299.99941 * 23 22 12 39 39 H 1.08994 * 109.46917 * 60.00454 * 24 22 12 40 40 H 1.09005 * 109.47067 * 180.02562 * 24 22 12 41 41 H 1.08997 * 109.47325 * 299.99816 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2330 -1.0215 5 8 3.6738 1.1003 0.0347 6 6 1.9378 2.2415 1.5254 7 6 2.6413 2.1042 2.6708 8 6 2.0230 2.9155 3.6351 9 6 0.9570 3.5099 3.0230 10 6 0.0134 4.4419 3.6489 11 8 0.0776 4.6618 4.8440 12 7 -0.9249 5.0549 2.9003 13 6 -1.0637 4.7198 1.4810 14 6 -1.9148 3.4845 1.3374 15 1 -2.3122 2.9974 2.2156 16 6 -2.1853 2.9754 0.0849 17 7 -1.7009 3.5682 -0.9845 18 14 -3.2397 1.4437 -0.0930 19 1 -4.6664 1.8366 -0.2171 20 1 -2.8249 0.6956 -1.3069 21 1 -3.0659 0.5815 1.1033 22 6 -1.8061 6.0563 3.5062 23 6 -1.7098 7.3640 2.7178 24 6 -3.2493 5.5492 3.4785 25 8 0.9257 3.0919 1.7405 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9500 -0.8400 -0.0004 30 1 3.5151 1.4865 2.8170 31 1 2.3284 3.0415 4.6633 32 1 -1.5368 5.5499 0.9563 33 1 -0.0784 4.5340 1.0534 34 1 -1.8915 3.2103 -1.8657 35 1 -1.5021 6.2310 4.5382 36 1 -2.0139 7.1894 1.6857 37 1 -2.3657 8.1090 3.1683 38 1 -0.6816 7.7253 2.7375 39 1 -3.3179 4.6176 4.0402 40 1 -3.9050 6.2945 3.9289 41 1 -3.5534 5.3745 2.4465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522237330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:26 Heat of formation + Delta-G solvation = -77.799592 kcal Electronic energy + Delta-G solvation = -28388.939554 eV Core-core repulsion = 24398.771902 eV Total energy + Delta-G solvation = -3990.167653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33393 -39.18805 -37.06187 -36.06043 -35.65208 -34.86349 -33.11965 -32.76622 -31.61797 -29.54626 -27.29135 -26.74462 -25.84688 -23.96964 -23.04369 -21.87136 -20.62224 -19.46853 -18.96681 -17.97361 -17.41117 -16.94293 -16.59915 -16.08881 -15.79342 -15.63904 -14.59257 -14.50519 -14.22665 -13.97643 -13.67425 -13.37936 -13.26470 -13.03948 -12.80446 -12.70227 -12.58866 -12.39824 -11.97198 -11.79340 -11.78734 -11.60987 -11.45593 -11.31163 -11.19831 -11.02779 -10.87031 -10.71475 -10.39086 -10.04970 -9.86451 -9.72534 -9.64881 -9.51045 -8.80468 -8.50810 -7.88215 -6.11104 -4.17225 0.43200 1.11851 2.26300 2.97687 3.13791 3.22423 3.25097 3.29757 3.62774 3.74443 3.84150 4.30828 4.76164 4.98646 5.06372 5.20571 5.22957 5.38025 5.57251 5.60049 5.71253 5.76975 5.79262 5.82456 5.85945 6.02372 6.06589 6.15120 6.26794 6.34065 6.42922 6.61922 6.68153 6.89357 6.95746 7.03814 7.31288 7.43295 7.78652 8.07092 8.07685 8.58261 8.86308 9.45803 10.96000 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.011631 B = 0.006789 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.742138 B = 4123.049911 C = 5641.478628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.111 6.111 3 S 2.718 3.282 4 O -0.911 6.911 5 O -0.953 6.953 6 C -0.574 4.574 7 C -0.106 4.106 8 C -0.173 4.173 9 C 0.009 3.991 10 C 0.589 3.411 11 O -0.551 6.551 12 N -0.572 5.572 13 C 0.226 3.774 14 C -0.539 4.539 15 H 0.058 0.942 16 C 0.074 3.926 17 N -0.866 5.866 18 Si 0.869 3.131 19 H -0.280 1.280 20 H -0.278 1.278 21 H -0.271 1.271 22 C 0.135 3.865 23 C -0.160 4.160 24 C -0.154 4.154 25 O -0.047 6.047 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.416 0.584 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.267 0.733 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 -3.748 3.561 6.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.872 5.872 3 S 2.799 3.201 4 O -0.901 6.901 5 O -0.943 6.943 6 C -0.707 4.707 7 C -0.127 4.127 8 C -0.194 4.194 9 C -0.050 4.050 10 C 0.376 3.624 11 O -0.433 6.433 12 N -0.301 5.301 13 C 0.107 3.893 14 C -0.577 4.577 15 H 0.076 0.924 16 C -0.131 4.131 17 N -0.503 5.503 18 Si 0.697 3.303 19 H -0.207 1.207 20 H -0.204 1.204 21 H -0.195 1.195 22 C 0.032 3.968 23 C -0.218 4.218 24 C -0.212 4.212 25 O 0.064 5.936 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.250 0.750 30 H 0.182 0.818 31 H 0.181 0.819 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.122 -2.994 3.056 5.941 hybrid contribution -0.614 -1.385 0.663 1.654 sum 3.508 -4.379 3.719 6.731 Atomic orbital electron populations 1.21712 0.77467 1.03716 1.04054 1.55280 1.16702 1.23804 1.91430 1.01750 0.72717 0.72904 0.72744 1.93715 1.77515 1.67354 1.51482 1.93616 1.30340 1.83792 1.86594 1.36053 1.00478 1.11424 1.22724 1.21736 1.00113 0.99745 0.91129 1.21962 0.96176 0.99929 1.01381 1.22896 0.98455 0.99969 0.83638 1.16669 0.80462 0.79734 0.85584 1.90777 1.73883 1.65033 1.13642 1.48407 1.30754 1.37408 1.13506 1.19809 0.98814 0.97116 0.73539 1.21255 1.32643 1.11213 0.92630 0.92380 1.24821 0.95717 0.96874 0.95732 1.69879 1.42785 1.39475 0.98142 0.87010 0.81361 0.83981 0.77986 1.20650 1.20353 1.19544 1.20990 0.90578 0.87509 0.97728 1.22148 1.01670 0.96238 1.01752 1.22080 0.94676 1.00464 1.03947 1.84975 1.38617 1.44060 1.25993 0.90898 0.90442 0.90260 0.75047 0.81802 0.81945 0.93507 0.93027 0.92274 0.89338 0.91202 0.91924 0.92805 0.92754 0.92878 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 9.93 59.85 0.59 1.77 16 2 N -1.11 -15.11 6.19 -16.63 -0.10 -15.21 16 3 S 2.72 46.08 5.89 -107.50 -0.63 45.45 16 4 O -0.91 -19.38 17.74 -57.26 -1.02 -20.40 16 5 O -0.95 -16.12 17.83 -57.17 -1.02 -17.14 16 6 C -0.57 -10.53 7.32 29.63 0.22 -10.31 16 7 C -0.11 -1.69 10.59 -39.89 -0.42 -2.11 16 8 C -0.17 -3.00 10.63 -39.39 -0.42 -3.42 16 9 C 0.01 0.19 6.75 -36.80 -0.25 -0.06 16 10 C 0.59 12.63 7.58 -12.86 -0.10 12.53 16 11 O -0.55 -12.20 16.22 5.20 0.08 -12.12 16 12 N -0.57 -11.97 2.38 -169.01 -0.40 -12.37 16 13 C 0.23 5.28 4.12 -5.19 -0.02 5.26 16 14 C -0.54 -13.32 7.52 -34.44 -0.26 -13.58 16 15 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 16 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 17 N -0.87 -23.12 13.29 55.43 0.74 -22.38 16 18 Si 0.87 19.11 27.35 -169.99 -4.65 14.46 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 C 0.14 2.40 3.24 -67.93 -0.22 2.18 16 23 C -0.16 -2.47 9.10 37.16 0.34 -2.13 16 24 C -0.15 -2.60 8.92 37.16 0.33 -2.27 16 25 O -0.05 -1.01 6.63 4.96 0.03 -0.97 16 26 H 0.07 1.23 7.76 -51.93 -0.40 0.83 16 27 H 0.08 1.35 7.52 -51.93 -0.39 0.96 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.42 4.05 8.96 -34.48 -0.31 3.74 16 30 H 0.16 2.01 8.06 -52.48 -0.42 1.59 16 31 H 0.16 2.43 8.06 -52.49 -0.42 2.01 16 32 H 0.05 1.13 6.20 -51.93 -0.32 0.81 16 33 H 0.05 1.32 5.36 -51.93 -0.28 1.04 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.09 1.57 6.93 -51.93 -0.36 1.21 16 36 H 0.07 1.16 6.50 -51.93 -0.34 0.82 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.46 7.29 -51.93 -0.38 1.08 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -31.38 355.44 -7.20 -38.58 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.28 Total: 7.14 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.30 Total: -10.39 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.23 Total: -49.96 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -1.92 Total: -50.63 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.65 Total: 14.46 kcal Atomic # 16 Polarization: 46.08 SS G_CDS: -0.63 Total: 45.45 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.38 -7.20 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522237330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.221 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds