Wall clock time and date at job start Tue Mar 31 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36899 * 120.00085 * 2 1 4 4 H 1.07996 * 120.00178 * 145.87088 * 3 2 1 5 5 C 1.39032 * 119.99815 * 325.87275 * 3 2 1 6 6 N 1.31370 * 120.00047 * 39.97751 * 5 3 2 7 7 Si 1.86796 * 119.99637 * 219.97393 * 5 3 2 8 8 H 1.48502 * 109.47556 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.46881 * 120.00139 * 7 5 3 10 10 H 1.48504 * 109.47271 * 240.00048 * 7 5 3 11 11 C 1.34776 * 119.99988 * 179.97438 * 2 1 3 12 12 O 1.21602 * 120.00325 * 186.80295 * 11 2 1 13 13 C 1.47579 * 119.99866 * 6.80087 * 11 2 1 14 14 C 1.40065 * 120.41170 * 320.48802 * 13 11 2 15 15 N 1.31502 * 121.39916 * 179.97438 * 14 13 11 16 16 C 1.32470 * 121.70362 * 359.97438 * 15 14 13 17 17 C 1.41084 * 120.35852 * 0.02562 * 16 15 14 18 18 C 1.39348 * 119.60025 * 359.97438 * 17 16 15 19 19 C 1.46759 * 118.42707 * 179.97438 * 17 16 15 20 20 O 1.34922 * 120.80672 * 179.97438 * 19 17 16 21 21 N 1.32218 * 118.38438 * 359.97438 * 19 17 16 22 22 C 1.33371 * 121.59801 * 0.02562 * 21 19 17 23 23 O 1.21855 * 118.47823 * 179.97438 * 22 21 19 24 24 N 1.34406 * 123.05126 * 359.73115 * 22 21 19 25 25 C 1.46501 * 119.80043 * 180.02562 * 24 22 21 26 26 C 1.52999 * 117.49827 * 109.65306 * 25 24 22 27 27 C 1.52997 * 117.49862 * 40.99191 * 25 24 22 28 28 H 1.09002 * 109.47290 * 278.52044 * 1 2 3 29 29 H 1.09002 * 109.47367 * 38.52214 * 1 2 3 30 30 H 1.09000 * 109.47334 * 158.52147 * 1 2 3 31 31 H 0.97002 * 119.99910 * 180.02562 * 6 5 3 32 32 H 1.08000 * 119.30009 * 359.97309 * 14 13 11 33 33 H 1.08004 * 121.12020 * 179.97438 * 18 17 16 34 34 H 0.96699 * 113.99427 * 180.02562 * 20 19 17 35 35 H 1.09001 * 115.54978 * 255.32145 * 25 24 22 36 36 H 1.09000 * 117.50299 * 0.02562 * 26 25 24 37 37 H 1.09003 * 117.49764 * 145.02115 * 26 25 24 38 38 H 1.08993 * 117.49935 * 214.97978 * 27 25 24 39 39 H 1.09001 * 117.49832 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.0900 1.2661 0.5247 5 6 1.6339 2.2859 -0.6755 6 7 0.3452 2.5374 -0.6341 7 14 2.7737 3.4068 -1.6419 8 1 4.1685 2.9090 -1.5311 9 1 2.3643 3.4173 -3.0693 10 1 2.6945 4.7848 -1.0940 11 6 2.1389 -1.1672 0.0005 12 8 3.3485 -1.1709 0.1253 13 6 1.4087 -2.4408 -0.1503 14 6 0.1749 -2.6303 0.4851 15 7 -0.4924 -3.7569 0.3636 16 6 -0.0319 -4.7639 -0.3636 17 6 1.2038 -4.6518 -1.0351 18 6 1.9398 -3.4732 -0.9303 19 6 1.6738 -5.7936 -1.8284 20 8 2.8481 -5.7383 -2.4905 21 7 0.9186 -6.8776 -1.8785 22 6 -0.2450 -6.9492 -1.2306 23 8 -0.8957 -7.9759 -1.3164 24 7 -0.7312 -5.9431 -0.4836 25 6 -2.0183 -6.0989 0.1985 26 6 -1.9992 -6.2237 1.7233 27 6 -2.3093 -7.4481 0.8586 28 1 -0.3634 0.1523 1.0163 29 1 -0.3634 0.8040 -0.6400 30 1 -0.3634 -0.9563 -0.3763 31 1 -0.0146 3.3049 -1.1058 32 1 -0.2371 -1.8342 1.0875 33 1 2.8888 -3.3611 -1.4337 34 1 3.0611 -6.5438 -2.9813 35 1 -2.8567 -5.5680 -0.2526 36 1 -1.0291 -6.1894 2.2190 37 1 -2.8252 -5.7753 2.2753 38 1 -3.3391 -7.8048 0.8421 39 1 -1.5432 -8.2201 0.7849 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523072397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:05 Heat of formation + Delta-G solvation = 30.749468 kcal Electronic energy + Delta-G solvation = -28013.884620 eV Core-core repulsion = 23925.272807 eV Total energy + Delta-G solvation = -4088.611812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.05230 -39.91397 -39.17301 -38.17963 -37.02193 -35.60523 -35.02371 -33.61848 -32.40994 -32.17610 -30.33196 -26.79458 -25.63562 -25.09643 -24.28865 -23.82670 -22.46369 -21.66738 -20.70752 -19.70040 -19.34986 -17.85280 -17.33791 -17.09669 -16.62342 -16.14732 -15.90475 -15.34251 -15.24494 -14.90428 -14.70905 -14.49880 -14.27221 -14.07290 -13.90043 -13.72172 -13.23672 -13.08203 -12.76699 -11.95279 -11.88485 -11.74883 -11.63088 -11.37967 -11.09104 -10.95023 -10.73273 -10.55182 -10.46807 -10.40821 -10.31925 -10.11624 -9.79594 -9.67357 -8.85394 -8.73194 -8.37465 -8.04519 -6.81741 -4.04278 0.08426 0.71886 1.50242 2.13600 2.63740 2.89559 3.04759 3.16361 3.25542 3.46565 3.63715 3.82910 3.86771 3.99738 4.04767 4.29062 4.52887 4.58995 4.67711 4.72123 4.76154 4.84388 4.90438 5.14188 5.31115 5.46884 5.53962 5.68263 5.81900 5.93660 5.98083 6.01069 6.04589 6.25290 6.35251 6.45887 6.74464 7.00417 7.41439 7.49369 7.70162 7.97391 7.97945 8.24104 8.88296 9.08249 9.70448 10.18712 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.018702 B = 0.003403 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.830852 B = 8225.993179 C = 9197.872880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.424 5.424 3 C -0.333 4.333 4 H 0.106 0.894 5 C 0.064 3.936 6 N -0.828 5.828 7 Si 0.899 3.101 8 H -0.261 1.261 9 H -0.276 1.276 10 H -0.280 1.280 11 C 0.479 3.521 12 O -0.579 6.579 13 C -0.180 4.180 14 C 0.199 3.801 15 N -0.506 5.506 16 C 0.408 3.592 17 C -0.231 4.231 18 C 0.057 3.943 19 C 0.491 3.509 20 O -0.431 6.431 21 N -0.613 5.613 22 C 0.676 3.324 23 O -0.519 6.519 24 N -0.510 5.510 25 C 0.067 3.933 26 C -0.164 4.164 27 C -0.152 4.152 28 H 0.046 0.954 29 H 0.126 0.874 30 H 0.040 0.960 31 H 0.275 0.725 32 H 0.185 0.815 33 H 0.162 0.838 34 H 0.422 0.578 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 -11.689 -0.235 12.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.141 5.141 3 C -0.459 4.459 4 H 0.123 0.877 5 C -0.145 4.145 6 N -0.462 5.462 7 Si 0.723 3.277 8 H -0.184 1.184 9 H -0.201 1.201 10 H -0.206 1.206 11 C 0.267 3.733 12 O -0.464 6.464 13 C -0.187 4.187 14 C 0.037 3.963 15 N -0.220 5.220 16 C 0.172 3.828 17 C -0.240 4.240 18 C 0.029 3.971 19 C 0.282 3.718 20 O -0.225 6.225 21 N -0.368 5.368 22 C 0.377 3.623 23 O -0.392 6.392 24 N -0.235 5.235 25 C -0.037 4.037 26 C -0.202 4.202 27 C -0.189 4.189 28 H 0.064 0.936 29 H 0.143 0.857 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.202 0.798 33 H 0.180 0.820 34 H 0.281 0.719 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.906 -12.561 -0.081 13.485 hybrid contribution 0.937 0.940 -0.836 1.569 sum -3.969 -11.620 -0.917 12.314 Atomic orbital electron populations 1.23068 0.81966 1.02462 1.02724 1.43460 1.05302 1.04768 1.60582 1.19387 1.06161 0.87253 1.33052 0.87672 1.25507 0.95729 0.97817 0.95427 1.69942 1.13705 1.26757 1.35801 0.86363 0.82365 0.78886 0.80070 1.18434 1.20129 1.20626 1.17401 0.87037 0.82293 0.86545 1.90653 1.13473 1.86229 1.56062 1.21324 0.97373 0.97999 1.02047 1.23732 0.88881 0.91954 0.91717 1.67372 1.34840 1.00195 1.19605 1.18308 0.86765 0.87239 0.90471 1.19193 0.98571 0.96967 1.09269 1.21617 0.97406 0.87942 0.90167 1.21648 0.82717 0.86990 0.80473 1.84944 1.31782 1.44934 1.60817 1.69516 1.09295 1.25694 1.32307 1.17006 0.83682 0.83185 0.78384 1.90940 1.57167 1.27755 1.63341 1.45496 1.20725 1.11996 1.45253 1.21651 0.84924 1.03865 0.93253 1.23287 1.03873 1.01335 0.91712 1.23290 1.03799 0.91189 1.00660 0.93588 0.85657 0.94204 0.91413 0.79837 0.81999 0.71931 0.85353 0.88701 0.87288 0.87532 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 8.34 59.85 0.50 1.29 16 2 N -0.42 -9.76 3.01 -123.37 -0.37 -10.13 16 3 C -0.33 -8.44 8.93 -14.99 -0.13 -8.57 16 4 H 0.11 2.83 7.78 -52.49 -0.41 2.42 16 5 C 0.06 1.53 5.30 -17.45 -0.09 1.44 16 6 N -0.83 -19.38 10.50 55.50 0.58 -18.80 16 7 Si 0.90 18.74 29.69 -169.99 -5.05 13.69 16 8 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 9 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 10 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 11 C 0.48 10.61 7.30 -12.45 -0.09 10.52 16 12 O -0.58 -14.80 16.73 5.28 0.09 -14.71 16 13 C -0.18 -3.15 5.33 -104.79 -0.56 -3.71 16 14 C 0.20 3.05 8.51 -17.01 -0.14 2.90 16 15 N -0.51 -7.46 9.55 -11.85 -0.11 -7.58 16 16 C 0.41 6.11 7.34 -155.54 -1.14 4.97 16 17 C -0.23 -3.35 5.88 -104.96 -0.62 -3.97 16 18 C 0.06 0.88 9.42 -38.56 -0.36 0.52 16 19 C 0.49 6.32 8.12 -13.94 -0.11 6.21 16 20 O -0.43 -4.06 13.07 -16.49 -0.22 -4.28 16 21 N -0.61 -9.06 10.35 -15.17 -0.16 -9.22 16 22 C 0.68 11.01 8.14 -88.50 -0.72 10.29 16 23 O -0.52 -9.41 14.87 5.05 0.08 -9.34 16 24 N -0.51 -7.53 2.94 -113.94 -0.34 -7.86 16 25 C 0.07 0.84 5.48 -67.93 -0.37 0.47 16 26 C -0.16 -1.73 10.31 -26.69 -0.28 -2.01 16 27 C -0.15 -1.69 9.11 -26.69 -0.24 -1.94 16 28 H 0.05 0.84 7.74 -51.93 -0.40 0.44 16 29 H 0.13 2.71 5.05 -51.93 -0.26 2.45 16 30 H 0.04 0.67 4.60 -51.93 -0.24 0.43 16 31 H 0.27 6.00 8.31 -40.82 -0.34 5.66 16 32 H 0.19 2.60 5.59 -52.49 -0.29 2.31 16 33 H 0.16 2.40 7.84 -52.48 -0.41 1.99 16 34 H 0.42 2.01 8.99 45.56 0.41 2.42 16 35 H 0.13 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 1.40 6.85 -51.93 -0.36 1.04 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -31.09 334.86 -7.60 -38.69 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -2.79 Total: 6.08 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: -4.37 Total: 18.40 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.39 Total: -53.58 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.05 Total: -28.33 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.05 Total: 13.69 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.09 -7.60 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523072397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.443 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds