Wall clock time and date at job start Tue Mar 31 2020 05:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33930 * 125.61989 * 2 1 4 4 C 1.34912 * 109.38649 * 180.12546 * 3 2 1 5 5 C 1.46655 * 125.98620 * 179.88309 * 4 3 2 6 6 O 1.21695 * 120.00044 * 173.19295 * 5 4 3 7 7 N 1.34771 * 120.00430 * 353.19889 * 5 4 3 8 8 C 1.46500 * 119.99672 * 4.22683 * 7 5 4 9 9 C 1.50702 * 109.47230 * 83.22232 * 8 7 5 10 10 H 1.07994 * 120.00258 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99962 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00252 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00048 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47090 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47279 * 120.00188 * 13 11 9 16 16 H 1.48503 * 109.47097 * 240.00462 * 13 11 9 17 17 C 1.46496 * 120.00492 * 184.22330 * 7 5 4 18 18 C 1.52996 * 109.47490 * 303.01293 * 17 7 5 19 19 C 1.53004 * 109.46701 * 63.01194 * 17 7 5 20 20 C 1.36544 * 108.02281 * 359.62649 * 4 3 2 21 21 C 1.35132 * 125.61540 * 179.70434 * 2 1 3 22 22 S 1.76200 * 126.44150 * 0.02562 * 21 2 1 23 23 N 1.65599 * 107.21913 * 295.02066 * 22 21 2 24 24 O 1.42099 * 106.40172 * 48.56148 * 22 21 2 25 25 O 1.42104 * 106.40127 * 181.48017 * 22 21 2 26 26 H 1.09007 * 109.47319 * 270.29324 * 1 2 3 27 27 H 1.08993 * 109.47134 * 30.29341 * 1 2 3 28 28 H 1.09002 * 109.47631 * 150.29482 * 1 2 3 29 29 H 1.09004 * 109.47410 * 203.22226 * 8 7 5 30 30 H 1.08997 * 109.47143 * 323.22025 * 8 7 5 31 31 H 0.96998 * 119.99970 * 179.97438 * 12 11 9 32 32 H 1.08993 * 109.47579 * 183.00928 * 17 7 5 33 33 H 1.09004 * 109.47193 * 65.84241 * 18 17 7 34 34 H 1.09002 * 109.47790 * 185.84904 * 18 17 7 35 35 H 1.09000 * 109.46985 * 305.85027 * 18 17 7 36 36 H 1.09000 * 109.47628 * 64.88138 * 19 17 7 37 37 H 1.09007 * 109.47085 * 184.88290 * 19 17 7 38 38 H 1.08997 * 109.47200 * 304.87713 * 19 17 7 39 39 H 1.08000 * 126.64567 * 180.19141 * 20 4 3 40 40 H 0.97002 * 119.99840 * 0.02562 * 23 22 21 41 41 H 0.97001 * 119.99930 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2870 1.0887 0.0000 4 6 3.5823 0.7116 -0.0028 5 6 4.7414 1.6100 -0.0061 6 8 5.8637 1.1558 0.1165 7 7 4.5638 2.9388 -0.1448 8 6 3.2095 3.4949 -0.1992 9 6 2.6852 3.6785 1.2017 10 1 3.2991 3.4076 2.0479 11 6 1.4217 4.1924 1.4030 12 7 0.6742 4.5228 0.3726 13 14 0.7715 4.4193 3.1395 14 1 1.7996 3.9756 4.1149 15 1 0.4592 5.8530 3.3678 16 1 -0.4610 3.6100 3.3162 17 6 5.7247 3.8270 -0.2411 18 6 6.6116 3.6427 0.9918 19 6 6.5245 3.4861 -1.5002 20 6 3.6250 -0.6532 0.0039 21 6 2.2939 -1.0985 0.0057 22 16 1.7511 -2.7748 0.0137 23 7 0.9630 -3.0281 1.4480 24 8 0.7695 -2.8836 -1.0081 25 8 2.9239 -3.5762 0.0533 26 1 -0.3634 0.0053 1.0277 27 1 -0.3633 0.8873 -0.5183 28 1 -0.3634 -0.8926 -0.5092 29 1 3.2327 4.4588 -0.7077 30 1 2.5580 2.8121 -0.7445 31 1 -0.2148 4.8839 0.5143 32 1 5.3871 4.8619 -0.2944 33 1 7.0330 2.6374 0.9894 34 1 7.4187 4.3751 0.9718 35 1 6.0150 3.7842 1.8930 36 1 5.9216 3.6999 -2.3827 37 1 7.4336 4.0870 -1.5270 38 1 6.7883 2.4286 -1.4879 39 1 4.5112 -1.2704 0.0066 40 1 0.8790 -2.3052 2.0894 41 1 0.5855 -3.8992 1.6467 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531785593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:20 Heat of formation + Delta-G solvation = -96.025473 kcal Electronic energy + Delta-G solvation = -27677.842049 eV Core-core repulsion = 23686.884063 eV Total energy + Delta-G solvation = -3990.957986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.52024 -39.30881 -37.06039 -35.76885 -35.66045 -33.60568 -33.26362 -33.05714 -32.03174 -31.29141 -27.41552 -26.78554 -26.73293 -23.49760 -22.81929 -21.83583 -20.98158 -19.80399 -19.14410 -17.53045 -17.18871 -16.81627 -16.44177 -16.07919 -15.71611 -15.49399 -15.34098 -14.88841 -14.46649 -14.25241 -13.85538 -13.28312 -13.03897 -12.98305 -12.81696 -12.72944 -12.36503 -12.19743 -12.12165 -12.01932 -11.93794 -11.82372 -11.59684 -11.55526 -11.15954 -11.05653 -10.99250 -10.80015 -10.56344 -10.49674 -10.28516 -10.18303 -9.81604 -9.28696 -8.64545 -8.47197 -7.85602 -6.26006 -4.31721 0.48709 1.36241 1.90653 2.90559 3.11070 3.21296 3.22952 3.25673 3.60690 3.69747 3.74476 4.24453 4.47553 4.64876 5.07120 5.13202 5.23583 5.38086 5.43463 5.57414 5.58604 5.71042 5.73194 5.75268 5.91462 6.00032 6.07555 6.13986 6.24996 6.34720 6.42195 6.59218 6.65260 6.77629 6.92720 7.01641 7.20008 7.44400 7.67744 7.95926 8.09145 8.64345 8.78188 9.34045 10.81119 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.010789 B = 0.005475 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.716142 B = 5113.113619 C = 6927.287101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.147 3.853 3 O -0.091 6.091 4 C -0.050 4.050 5 C 0.598 3.402 6 O -0.545 6.545 7 N -0.579 5.579 8 C 0.230 3.770 9 C -0.527 4.527 10 H 0.059 0.941 11 C 0.068 3.932 12 N -0.889 5.889 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.147 3.853 18 C -0.167 4.167 19 C -0.166 4.166 20 C -0.065 4.065 21 C -0.783 4.783 22 S 2.733 3.267 23 N -1.252 6.252 24 O -0.967 6.967 25 O -0.966 6.966 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.264 0.736 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.169 0.831 40 H 0.417 0.583 41 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 -8.202 0.577 8.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.087 3.913 3 O 0.019 5.981 4 C -0.103 4.103 5 C 0.386 3.614 6 O -0.427 6.427 7 N -0.308 5.308 8 C 0.111 3.889 9 C -0.566 4.566 10 H 0.078 0.922 11 C -0.135 4.135 12 N -0.528 5.528 13 Si 0.718 3.282 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.044 3.956 18 C -0.225 4.225 19 C -0.224 4.224 20 C -0.087 4.087 21 C -0.872 4.872 22 S 2.820 3.180 23 N -0.927 5.927 24 O -0.956 6.956 25 O -0.956 6.956 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.187 0.813 40 H 0.244 0.756 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.139 -8.518 -0.283 8.524 hybrid contribution -0.678 0.913 1.688 2.036 sum -0.540 -7.605 1.405 7.752 Atomic orbital electron populations 1.20988 0.84119 1.06981 1.05307 1.22820 0.94517 0.83848 0.90122 1.84815 1.15783 1.31825 1.65650 1.22393 0.82554 0.93995 1.11335 1.16558 0.85356 0.81886 0.77624 1.90735 1.22251 1.76634 1.53085 1.48327 1.09644 1.04827 1.68049 1.19757 0.75866 0.95129 0.98184 1.21423 1.00249 1.42993 0.91939 0.92250 1.24862 0.96498 0.95102 0.97014 1.69934 1.10284 1.42998 1.29536 0.86554 0.78877 0.78091 0.84659 1.19751 1.20780 1.20800 1.20946 0.85733 0.93855 0.95066 1.22209 0.99265 1.03315 0.97670 1.22190 0.99654 1.03320 0.97235 1.21292 0.95495 0.92968 0.98896 1.31112 1.02219 1.22422 1.31453 1.00495 0.73245 0.71951 0.72274 1.53074 1.77588 1.22791 1.39208 1.93583 1.60792 1.85719 1.55531 1.93574 1.49328 1.66625 1.86033 0.88216 0.87701 0.87353 0.94117 0.93220 0.92628 0.89408 0.90318 0.92770 0.92413 0.92930 0.92114 0.91115 0.81311 0.75550 0.75153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 10.20 36.00 0.37 -1.15 16 2 C 0.15 2.43 7.31 -35.42 -0.26 2.17 16 3 O -0.09 -1.85 6.61 5.00 0.03 -1.81 16 4 C -0.05 -1.01 6.74 -36.80 -0.25 -1.26 16 5 C 0.60 12.65 6.96 -12.87 -0.09 12.56 16 6 O -0.55 -11.72 13.17 5.19 0.07 -11.65 16 7 N -0.58 -12.04 2.43 -169.02 -0.41 -12.45 16 8 C 0.23 5.33 4.76 -5.19 -0.02 5.30 16 9 C -0.53 -13.19 8.42 -34.44 -0.29 -13.48 16 10 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -23.10 13.29 55.43 0.74 -22.36 16 13 Si 0.89 19.65 29.54 -169.99 -5.02 14.63 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 C 0.15 2.62 3.27 -67.93 -0.22 2.40 16 18 C -0.17 -2.83 8.94 37.16 0.33 -2.49 16 19 C -0.17 -2.59 9.23 37.16 0.34 -2.25 16 20 C -0.07 -1.17 10.33 -39.39 -0.41 -1.57 16 21 C -0.78 -12.33 6.15 -39.89 -0.25 -12.57 16 22 S 2.73 35.92 6.08 -107.50 -0.65 35.27 16 23 N -1.25 -10.61 9.55 60.35 0.58 -10.03 16 24 O -0.97 -14.56 16.55 -57.17 -0.95 -15.51 16 25 O -0.97 -15.59 17.79 -57.17 -1.02 -16.61 16 26 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.11 1.21 6.49 -51.93 -0.34 0.88 16 29 H 0.04 0.98 7.81 -51.93 -0.41 0.58 16 30 H 0.05 1.22 5.41 -51.93 -0.28 0.93 16 31 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 32 H 0.09 1.52 7.73 -51.93 -0.40 1.12 16 33 H 0.08 1.44 6.04 -51.93 -0.31 1.12 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 39 H 0.17 2.84 8.06 -52.49 -0.42 2.41 16 40 H 0.42 2.87 8.92 -34.47 -0.31 2.56 16 41 H 0.42 2.51 8.96 -34.47 -0.31 2.21 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -32.47 354.91 -7.32 -39.79 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.19 Total: 6.13 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -0.84 Total: -10.73 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.90 Total: -44.85 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -1.86 Total: -45.58 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 35.92 SS G_CDS: -0.65 Total: 35.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.47 -7.32 -39.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531785593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.239 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds