Wall clock time and date at job start Tue Mar 31 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86793 * 120.00125 * 2 1 4 4 H 1.48505 * 109.47088 * 239.99805 * 3 2 1 5 5 H 1.48504 * 109.46921 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47534 * 119.99386 * 3 2 1 7 7 C 1.38950 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99962 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99992 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99817 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00281 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47537 * 179.97438 * 12 10 9 14 14 C 1.34768 * 120.00327 * 180.02562 * 13 12 10 15 15 O 1.21589 * 120.00055 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00045 * 179.97438 * 14 13 12 17 17 C 1.40020 * 119.99932 * 185.31671 * 16 14 13 18 18 C 1.38885 * 120.00686 * 33.31736 * 17 16 14 19 19 C 1.38029 * 119.99296 * 179.69938 * 18 17 16 20 20 C 1.38834 * 120.00757 * 0.25978 * 19 18 17 21 21 N 1.40332 * 119.99490 * 180.02562 * 20 19 18 22 22 C 1.36088 * 125.93885 * 179.97438 * 21 20 19 23 23 C 1.35388 * 106.04710 * 179.97438 * 22 21 20 24 24 N 1.33760 * 106.53712 * 0.02562 * 23 22 21 25 25 N 1.28606 * 109.06002 * 359.75445 * 24 23 22 26 26 C 1.38838 * 120.01261 * 0.02562 * 20 19 18 27 27 C 1.38031 * 120.00530 * 0.02562 * 26 20 19 28 28 H 0.96993 * 119.99823 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00232 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46906 * 59.99641 * 12 10 9 31 31 H 1.08998 * 109.47169 * 300.00394 * 12 10 9 32 32 H 0.97005 * 119.99588 * 359.97438 * 13 12 10 33 33 H 0.96996 * 120.00365 * 5.31786 * 16 14 13 34 34 H 1.07994 * 119.99921 * 359.97438 * 18 17 16 35 35 H 1.08005 * 119.99392 * 180.28290 * 19 18 17 36 36 H 1.07995 * 126.98053 * 359.96052 * 22 21 20 37 37 H 1.08003 * 126.73176 * 180.02562 * 23 22 21 38 38 H 1.08004 * 119.99894 * 179.97438 * 26 20 19 39 39 H 1.07995 * 120.00881 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1957 -5.9765 0.0004 14 6 1.7465 -7.2471 0.0002 15 8 0.5511 -7.4693 0.0002 16 7 2.6223 -8.2715 -0.0010 17 6 2.1594 -9.5882 -0.1135 18 6 1.0298 -9.8649 -0.8728 19 6 0.5774 -11.1637 -0.9886 20 6 1.2482 -12.1929 -0.3418 21 7 0.7883 -13.5134 -0.4602 22 6 1.3500 -14.6097 0.1183 23 6 0.5881 -15.6635 -0.2586 24 7 -0.3840 -15.1722 -1.0350 25 7 -0.2410 -13.8977 -1.1310 26 6 2.3740 -11.9159 0.4220 27 6 2.8263 -10.6171 0.5391 28 1 -0.4849 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6167 -4.9209 -0.8886 31 1 0.6174 -4.9205 0.8913 32 1 3.1494 -5.7993 -0.0007 33 1 3.5733 -8.0968 0.0761 34 1 0.5082 -9.0643 -1.3760 35 1 -0.2984 -11.3795 -1.5827 36 1 2.2257 -14.6342 0.7498 37 1 0.7363 -16.6980 0.0141 38 1 2.8954 -12.7167 0.9254 39 1 3.7017 -10.4015 1.1336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554223671.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:18 Heat of formation + Delta-G solvation = 77.392109 kcal Electronic energy + Delta-G solvation = -25680.048812 eV Core-core repulsion = 21625.752327 eV Total energy + Delta-G solvation = -4054.296485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.72064 -40.89748 -39.29470 -38.28043 -35.79993 -34.61541 -33.96108 -33.61576 -32.02826 -31.46218 -31.02849 -29.46595 -27.50289 -24.85943 -24.19918 -24.05905 -22.29921 -21.67685 -20.84257 -19.74263 -19.05559 -18.67146 -18.25220 -17.75073 -16.77841 -16.05029 -15.78209 -15.70811 -15.29734 -15.19124 -14.87348 -14.69689 -14.36592 -14.21241 -14.19127 -13.86742 -13.56719 -13.41293 -13.15257 -12.31447 -12.27644 -12.17753 -11.77493 -11.69115 -11.46408 -11.32645 -11.16020 -10.56114 -10.43194 -10.35869 -10.21132 -9.81231 -9.69816 -9.47882 -9.05803 -8.73376 -8.28945 -8.17662 -6.58105 -4.00664 0.24341 0.86578 1.60894 1.92465 2.21616 2.39130 2.93647 3.08697 3.17618 3.20910 3.39538 3.65528 3.95564 3.98084 4.12049 4.16573 4.37439 4.56234 4.73234 4.76362 4.77270 4.85045 5.05696 5.10172 5.26559 5.37127 5.49097 5.70429 5.73006 5.84147 5.85296 5.95824 5.98981 6.03594 6.30996 6.47122 6.60084 6.71870 7.39299 7.83484 7.84924 8.12104 8.35598 8.40834 8.97188 9.30928 9.78216 10.58419 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.048711 B = 0.001671 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.684114 B =16753.315469 C =17214.988961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.308 4.308 8 H 0.105 0.895 9 N -0.546 5.546 10 C 0.426 3.574 11 O -0.599 6.599 12 C 0.126 3.874 13 N -0.714 5.714 14 C 0.703 3.297 15 O -0.576 6.576 16 N -0.688 5.688 17 C 0.193 3.807 18 C -0.103 4.103 19 C -0.074 4.074 20 C 0.087 3.913 21 N -0.232 5.232 22 C -0.053 4.053 23 C -0.047 4.047 24 N -0.268 5.268 25 N -0.080 5.080 26 C -0.092 4.092 27 C -0.133 4.133 28 H 0.276 0.724 29 H 0.396 0.604 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.410 0.590 33 H 0.412 0.588 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.193 0.807 37 H 0.194 0.806 38 H 0.137 0.863 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.714 -24.490 1.639 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.437 4.437 8 H 0.123 0.877 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.486 6.486 12 C -0.002 4.002 13 N -0.371 5.371 14 C 0.403 3.597 15 O -0.453 6.453 16 N -0.335 5.335 17 C 0.096 3.904 18 C -0.125 4.125 19 C -0.094 4.094 20 C -0.004 4.004 21 N -0.020 5.020 22 C -0.201 4.201 23 C -0.203 4.203 24 N -0.134 5.134 25 N -0.058 5.058 26 C -0.113 4.113 27 C -0.154 4.154 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.248 0.752 33 H 0.248 0.752 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.210 0.790 37 H 0.211 0.789 38 H 0.155 0.845 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.075 -23.960 0.711 24.314 hybrid contribution 1.681 0.735 0.892 2.040 sum 5.756 -23.225 1.603 23.981 Atomic orbital electron populations 1.69603 1.06025 1.28766 1.48839 1.25338 0.95675 0.99986 0.96600 0.85857 0.78786 0.80070 0.79168 1.19751 1.20804 1.19755 1.19684 0.93454 0.81960 1.48633 0.87678 1.41773 1.09524 1.04436 1.62268 1.19680 0.88281 0.84935 0.85993 1.90495 1.13686 1.86785 1.57641 1.20875 0.91079 0.84701 1.03513 1.44789 1.11732 1.03052 1.77505 1.15825 0.85060 0.80626 0.78182 1.90956 1.13601 1.83773 1.56936 1.42695 1.10451 1.03421 1.76938 1.17665 0.95161 0.83164 0.94426 1.21216 0.96674 0.96454 0.98105 1.20868 0.99703 0.90611 0.98260 1.17612 0.98144 0.79858 1.04835 1.44759 1.18820 1.06869 1.31526 1.23824 1.04503 0.85910 1.05886 1.23652 0.94633 1.00948 1.01073 1.75127 1.21479 1.00221 1.16588 1.78391 1.04379 1.07903 1.15139 1.20571 0.94725 0.97382 0.98636 1.20704 1.02694 0.91026 1.01019 0.91437 0.76970 0.89627 0.89658 0.75223 0.75199 0.82911 0.83690 0.79003 0.78929 0.84485 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.18 13.05 55.50 0.72 -22.46 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 19.96 29.55 -169.99 -5.02 14.94 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 7 C -0.31 -8.09 9.68 -14.93 -0.14 -8.24 16 8 H 0.11 2.87 7.16 -52.48 -0.38 2.49 16 9 N -0.55 -12.94 5.29 -10.96 -0.06 -13.00 16 10 C 0.43 9.18 7.85 -10.99 -0.09 9.09 16 11 O -0.60 -14.46 15.24 5.55 0.08 -14.37 16 12 C 0.13 2.13 6.15 -5.19 -0.03 2.10 16 13 N -0.71 -10.44 5.53 -66.42 -0.37 -10.81 16 14 C 0.70 9.76 8.30 -86.93 -0.72 9.04 16 15 O -0.58 -9.74 14.02 5.29 0.07 -9.67 16 16 N -0.69 -6.81 5.35 -14.20 -0.08 -6.89 16 17 C 0.19 1.89 6.28 -83.63 -0.53 1.36 16 18 C -0.10 -1.14 8.65 -39.42 -0.34 -1.49 16 19 C -0.07 -0.77 9.61 -39.44 -0.38 -1.15 16 20 C 0.09 0.82 6.68 -83.52 -0.56 0.26 16 21 N -0.23 -2.36 3.56 -10.45 -0.04 -2.39 16 22 C -0.05 -0.38 10.92 -16.68 -0.18 -0.56 16 23 C -0.05 -0.38 12.05 -17.73 -0.21 -0.59 16 24 N -0.27 -3.26 12.39 30.24 0.37 -2.89 16 25 N -0.08 -1.01 12.41 60.35 0.75 -0.26 16 26 C -0.09 -0.63 9.45 -39.44 -0.37 -1.00 16 27 C -0.13 -0.93 9.96 -39.41 -0.39 -1.33 16 28 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.40 9.05 7.90 -40.82 -0.32 8.73 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.41 5.73 7.46 -40.82 -0.30 5.43 16 33 H 0.41 2.80 8.83 -40.82 -0.36 2.44 16 34 H 0.15 1.93 6.41 -52.49 -0.34 1.59 16 35 H 0.15 1.50 7.69 -52.48 -0.40 1.10 16 36 H 0.19 0.53 7.10 -52.49 -0.37 0.15 16 37 H 0.19 0.81 8.06 -52.48 -0.42 0.38 16 38 H 0.14 0.50 6.76 -52.48 -0.35 0.15 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 348.81 15.07 5.26 5.26 Total: -1.00 -33.68 348.81 -6.00 -39.68 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -3.66 Total: 14.75 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -4.04 Total: 8.11 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 1.31 Total: -58.70 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: 0.16 Total: -24.04 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.68 -6.00 -39.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554223671.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.072 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds