Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34747 * 125.86435 * 2 1 4 4 C 1.36679 * 107.58469 * 179.97438 * 3 2 1 5 5 C 1.47931 * 126.26175 * 179.97438 * 4 3 2 6 6 N 1.30210 * 125.47839 * 180.02562 * 5 4 3 7 7 C 1.31503 * 116.99287 * 180.02562 * 6 5 4 8 8 C 1.50699 * 122.07082 * 180.02562 * 7 6 5 9 9 N 1.46503 * 109.47269 * 305.02687 * 8 7 6 10 10 C 1.35312 * 125.86851 * 124.99868 * 9 8 7 11 11 C 1.35341 * 106.17598 * 180.02562 * 10 9 8 12 12 C 1.50700 * 126.75090 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46869 * 125.00400 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 N 1.33772 * 106.49948 * 0.26771 * 11 10 9 22 22 N 1.28637 * 108.88114 * 359.55958 * 21 11 10 23 23 C 1.33542 * 115.85773 * 0.27423 * 7 6 5 24 24 S 1.76176 * 125.47422 * 0.02562 * 5 4 3 25 25 C 1.41033 * 107.47600 * 0.26585 * 4 3 2 26 26 N 1.30619 * 108.07198 * 359.55115 * 25 4 3 27 27 H 1.09003 * 109.46789 * 90.00514 * 1 2 3 28 28 H 1.09003 * 109.47149 * 209.99734 * 1 2 3 29 29 H 1.08993 * 109.47239 * 330.00565 * 1 2 3 30 30 H 1.07998 * 126.20659 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.46863 * 185.02921 * 8 7 6 32 32 H 1.08991 * 109.47272 * 65.02924 * 8 7 6 33 33 H 1.08001 * 126.90658 * 359.97438 * 10 9 8 34 34 H 1.09004 * 109.47210 * 5.00693 * 12 11 10 35 35 H 1.08994 * 109.47551 * 245.00345 * 12 11 10 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 37 37 H 1.07996 * 125.87164 * 179.70340 * 23 7 6 38 38 H 1.08001 * 125.96267 * 179.74694 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2544 1.0920 0.0000 4 6 3.5522 0.6633 0.0006 5 6 4.7572 1.5215 0.0003 6 7 5.9879 1.0962 0.0004 7 6 6.9347 2.0088 0.0005 8 6 8.3971 1.6446 0.0001 9 7 8.6796 0.7568 1.1307 10 6 9.2591 -0.4636 1.0550 11 6 9.3269 -0.9283 2.3243 12 6 9.8924 -2.2518 2.7710 13 6 10.9521 -2.0179 3.8168 14 1 11.1917 -1.0116 4.1272 15 6 11.6113 -3.0891 4.3818 16 7 11.3192 -4.3145 4.0041 17 14 12.9193 -2.7996 5.6836 18 1 13.0586 -1.3418 5.9298 19 1 12.5225 -3.4782 6.9435 20 1 14.2163 -3.3487 5.2129 21 7 8.7872 0.0156 3.1037 22 7 8.4187 1.0034 2.3668 23 6 6.5202 3.2782 0.0064 24 16 4.7577 3.2832 -0.0003 25 6 3.5325 -0.7469 -0.0053 26 7 2.2852 -1.1347 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9220 2.1195 -0.0004 31 1 8.9970 2.5501 0.0905 32 1 8.6446 1.1362 -0.9317 33 1 9.5983 -0.9661 0.1612 34 1 10.3325 -2.7659 1.9165 35 1 9.0951 -2.8640 3.1923 36 1 11.7832 -5.0680 4.4014 37 1 7.1556 4.1514 0.0120 38 1 4.3976 -1.3933 -0.0103 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603207438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = 227.522844 kcal Electronic energy + Delta-G solvation = -23850.066293 eV Core-core repulsion = 20245.032836 eV Total energy + Delta-G solvation = -3605.033456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.096 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.38656 -41.58986 -39.75083 -34.74309 -33.80188 -33.09155 -31.82109 -30.92313 -30.08489 -27.75482 -27.37350 -26.97949 -24.56933 -23.30739 -21.84705 -21.56393 -20.95346 -20.20514 -19.28333 -18.13396 -17.22386 -16.59691 -16.24589 -15.96198 -15.90213 -15.16042 -14.72723 -14.59640 -14.40287 -14.01426 -13.86311 -13.72518 -13.27643 -13.20327 -13.00294 -12.86092 -12.52130 -12.05197 -11.69159 -11.56136 -11.17298 -10.90066 -10.66193 -10.57582 -10.18835 -9.96348 -9.88658 -9.85174 -9.60321 -9.45391 -9.33433 -9.16906 -8.35365 -8.26420 -7.99784 -5.91921 -3.91836 0.24011 1.04367 1.39163 1.45333 2.03077 2.11612 2.39044 2.80100 3.19696 3.40014 3.46738 3.52984 3.61897 3.65242 4.16361 4.28636 4.55563 4.57973 4.66248 4.71941 4.78709 4.93436 4.93950 5.02956 5.19325 5.22660 5.33667 5.39355 5.45589 5.84721 5.98434 6.18329 6.21937 6.41790 6.44423 7.23030 7.25588 7.29090 7.55882 7.63442 7.73022 8.06306 8.46216 9.12012 9.45065 9.70506 11.19306 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.002646 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.031511 B =10578.593383 C =11950.454870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.367 5.367 3 C 0.090 3.910 4 C -0.181 4.181 5 C 0.178 3.822 6 N -0.456 5.456 7 C 0.063 3.937 8 C 0.199 3.801 9 N -0.297 5.297 10 C -0.075 4.075 11 C 0.034 3.966 12 C 0.092 3.908 13 C -0.500 4.500 14 H 0.059 0.941 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 N -0.262 5.262 22 N -0.104 5.104 23 C -0.232 4.232 24 S 0.072 5.928 25 C 0.105 3.895 26 N -0.291 5.291 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.181 0.819 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.181 0.819 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.260 0.740 37 H 0.182 0.818 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.024 16.270 -15.962 31.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.146 5.146 3 C -0.063 4.063 4 C -0.197 4.197 5 C -0.100 4.100 6 N -0.170 5.170 7 C -0.070 4.070 8 C 0.074 3.926 9 N -0.092 5.092 10 C -0.223 4.223 11 C -0.103 4.103 12 C 0.054 3.946 13 C -0.539 4.539 14 H 0.077 0.923 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 N -0.129 5.129 22 N -0.083 5.083 23 C -0.372 4.372 24 S 0.329 5.671 25 C -0.085 4.085 26 N -0.111 5.111 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.198 0.802 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.198 0.802 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.199 0.801 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -23.198 16.378 -14.944 32.089 hybrid contribution 2.582 0.053 -0.173 2.589 sum -20.615 16.431 -15.118 30.389 Atomic orbital electron populations 1.21978 0.73330 1.05072 1.03837 1.48454 1.07168 1.03636 1.55373 1.22478 0.90108 0.93787 0.99882 1.17751 0.88963 0.92710 1.20283 1.24743 0.92683 0.91754 1.00779 1.66287 0.98211 1.35945 1.16509 1.19851 0.95735 0.88097 1.03289 1.20306 0.89575 0.94912 0.87786 1.46908 1.41181 1.13986 1.07164 1.23313 1.08584 0.88689 1.01726 1.22951 0.99158 0.99620 0.88589 1.17711 0.95425 0.84561 0.96931 1.21104 1.18766 0.93104 1.20878 0.92277 1.24978 0.97408 0.95085 0.97049 1.69963 1.42481 0.97987 1.43431 0.86474 0.81285 0.78343 0.81579 1.19735 1.21006 1.21144 1.75058 1.13366 0.98760 1.25737 1.78181 1.20757 1.22284 0.87031 1.26549 0.96820 1.01418 1.12378 1.84726 1.03922 1.07815 1.70656 1.24143 0.95155 0.93429 0.95789 1.77419 1.01620 1.07382 1.24675 0.90222 0.88708 0.89107 0.80200 0.87294 0.86508 0.80232 0.94587 0.94384 0.93049 0.80069 0.78725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.38 11.46 59.85 0.69 1.07 16 2 N -0.37 -3.18 4.00 -67.85 -0.27 -3.45 16 3 C 0.09 0.74 11.26 -16.84 -0.19 0.55 16 4 C -0.18 -2.04 6.08 -105.43 -0.64 -2.69 16 5 C 0.18 2.16 7.49 -14.27 -0.11 2.05 16 6 N -0.46 -6.49 10.52 -7.53 -0.08 -6.57 16 7 C 0.06 0.79 6.06 -84.38 -0.51 0.27 16 8 C 0.20 2.34 6.92 -5.19 -0.04 2.31 16 9 N -0.30 -5.24 3.43 -62.44 -0.21 -5.45 16 10 C -0.07 -1.43 11.49 -17.05 -0.20 -1.63 16 11 C 0.03 0.81 6.44 -82.78 -0.53 0.28 16 12 C 0.09 2.51 5.55 -29.03 -0.16 2.34 16 13 C -0.50 -14.81 9.09 -34.44 -0.31 -15.12 16 14 H 0.06 1.79 7.74 -52.49 -0.41 1.39 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 17 Si 0.90 22.59 29.54 -169.99 -5.02 17.57 16 18 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 N -0.26 -6.57 12.40 33.29 0.41 -6.16 16 22 N -0.10 -2.24 12.92 60.35 0.78 -1.46 16 23 C -0.23 -2.29 11.00 29.09 0.32 -1.97 16 24 S 0.07 0.66 23.23 -107.50 -2.50 -1.83 16 25 C 0.10 1.30 11.98 -17.01 -0.20 1.09 16 26 N -0.29 -3.51 12.53 30.83 0.39 -3.12 16 27 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.18 0.80 8.06 -52.49 -0.42 0.37 16 31 H 0.11 0.97 8.01 -51.93 -0.42 0.56 16 32 H 0.12 1.04 8.07 -51.93 -0.42 0.63 16 33 H 0.18 2.76 8.06 -52.49 -0.42 2.33 16 34 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 35 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.20 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -39.00 358.50 -6.53 -45.53 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -4.18 Total: -4.01 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.98 Total: -9.91 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 1.75 Total: -52.75 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.50 Total: -1.83 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.00 -6.53 -45.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603207438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 273.055 kcal (2) G-P(sol) polarization free energy of solvation -39.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 234.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 227.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds