Wall clock time and date at job start Tue Mar 31 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99714 * 2 1 4 4 C 1.50699 * 109.47337 * 274.99976 * 3 2 1 5 5 H 1.08001 * 119.99566 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00024 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00396 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99898 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46987 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47107 * 119.99723 * 8 6 4 11 11 H 1.48497 * 109.46967 * 240.00054 * 8 6 4 12 12 S 1.65596 * 120.00210 * 179.97438 * 2 1 3 13 13 O 1.42097 * 106.40286 * 342.11259 * 12 2 1 14 14 O 1.42100 * 106.40054 * 209.18809 * 12 2 1 15 15 N 1.65605 * 107.21658 * 95.65220 * 12 2 1 16 16 C 1.47152 * 120.98139 * 300.24153 * 15 12 2 17 17 C 1.53284 * 108.41994 * 230.54632 * 16 15 12 18 18 O 1.42970 * 109.22295 * 307.67909 * 17 16 15 19 19 C 1.42954 * 114.16238 * 62.57833 * 18 17 16 20 20 C 1.47220 * 121.03440 * 120.27245 * 15 12 2 21 21 H 1.09002 * 109.70378 * 249.21324 * 20 15 12 22 22 C 1.50704 * 109.66771 * 9.72729 * 20 15 12 23 23 C 1.34514 * 125.79321 * 243.76773 * 22 20 15 24 24 C 1.41380 * 106.84232 * 179.89247 * 23 22 20 25 25 C 1.34512 * 106.84116 * 0.37028 * 24 23 22 26 26 O 1.34305 * 125.78467 * 64.07889 * 22 20 15 27 27 H 1.09001 * 109.46831 * 265.10208 * 1 2 3 28 28 H 1.08997 * 109.47207 * 25.10357 * 1 2 3 29 29 H 1.09002 * 109.47057 * 145.10287 * 1 2 3 30 30 H 1.09001 * 109.47077 * 35.00118 * 3 2 1 31 31 H 1.09004 * 109.47054 * 154.99899 * 3 2 1 32 32 H 0.96997 * 120.00539 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.67971 * 110.79872 * 16 15 12 34 34 H 1.09007 * 109.67873 * 350.29279 * 16 15 12 35 35 H 1.09001 * 109.51544 * 67.59933 * 17 16 15 36 36 H 1.08995 * 109.51644 * 187.70656 * 17 16 15 37 37 H 1.09003 * 109.51591 * 57.34892 * 19 18 17 38 38 H 1.09009 * 109.51147 * 177.44751 * 19 18 17 39 39 H 1.07997 * 126.57811 * 0.02692 * 23 22 20 40 40 H 1.07997 * 126.58346 * 180.16602 * 24 23 22 41 41 H 1.07999 * 125.79393 * 179.79100 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9282 1.1939 -2.2331 6 6 3.0006 2.9505 -1.6664 7 7 3.5033 3.6470 -0.6706 8 14 3.1783 3.5669 -3.4208 9 1 2.5300 2.6074 -4.3506 10 1 2.5276 4.8957 -3.5469 11 1 4.6191 3.6870 -3.7596 12 16 2.2930 -1.4341 0.0006 13 8 1.3703 -2.4301 0.4198 14 8 3.5243 -1.1862 0.6653 15 7 2.6731 -1.7814 -1.5734 16 6 1.6202 -1.9478 -2.5878 17 6 1.8695 -3.2638 -3.3332 18 8 3.2176 -3.2874 -3.8086 19 6 4.2036 -3.2503 -2.7742 20 6 4.0738 -1.9336 -2.0001 21 1 4.3545 -1.1000 -2.6440 22 6 4.9720 -1.9652 -0.7905 23 6 5.9181 -1.0576 -0.4891 24 6 6.5126 -1.4732 0.7244 25 6 5.8999 -2.6142 1.0879 26 8 4.9677 -2.9074 0.1666 27 1 -0.3633 -0.0877 1.0239 28 1 -0.3633 0.9306 -0.4360 29 1 -0.3633 -0.8429 -0.5879 30 1 1.6501 2.0043 0.5895 31 1 3.1858 1.1178 0.4343 32 1 3.9667 4.4807 -0.8471 33 1 1.6531 -1.1156 -3.2910 34 1 0.6446 -1.9798 -2.1025 35 1 1.7077 -4.1023 -2.6557 36 1 1.1837 -3.3399 -4.1770 37 1 4.0503 -4.0887 -2.0947 38 1 5.1978 -3.3171 -3.2163 39 1 6.1730 -0.1789 -1.0629 40 1 7.3084 -0.9725 1.2558 41 1 6.1200 -3.1957 1.9709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609740802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:24 Heat of formation + Delta-G solvation = -72.760975 kcal Electronic energy + Delta-G solvation = -29154.643232 eV Core-core repulsion = 25164.694071 eV Total energy + Delta-G solvation = -3989.949162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.04165 -39.12600 -36.67618 -35.54096 -35.22913 -34.82609 -32.55367 -32.49410 -31.97137 -28.40643 -27.83503 -26.72169 -25.11553 -24.16552 -22.30294 -21.70802 -20.94043 -20.31486 -18.61433 -17.53577 -16.84923 -16.69869 -16.44219 -16.22835 -15.69189 -15.49486 -15.15102 -14.92189 -14.81581 -14.36961 -14.01618 -13.62293 -13.34733 -13.22905 -12.35972 -12.29675 -12.23789 -12.19386 -12.05075 -11.88180 -11.78435 -11.63710 -11.45102 -11.28740 -11.18450 -11.11540 -10.78389 -10.57661 -10.50878 -10.22691 -10.09076 -9.80422 -9.18142 -8.69325 -8.52715 -8.08620 -7.69170 -6.14025 -4.20650 1.16553 2.29687 3.17842 3.21088 3.30006 3.31755 3.39723 3.44757 3.84502 4.05522 4.33312 4.69046 4.80780 4.92040 5.11757 5.17374 5.20160 5.21302 5.32892 5.49171 5.58093 5.59712 5.61891 5.65410 5.88912 5.98557 6.02528 6.11066 6.25895 6.36474 6.50120 6.52168 6.63234 6.66563 7.08068 7.14011 7.30572 7.40889 7.58988 7.67347 7.82344 8.11754 8.83830 9.45360 10.93796 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.006677 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.658761 B = 4192.273696 C = 4461.838059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.995 5.995 3 C 0.248 3.752 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.891 3.109 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 S 2.783 3.217 13 O -1.000 7.000 14 O -0.949 6.949 15 N -1.004 6.004 16 C 0.094 3.906 17 C 0.049 3.951 18 O -0.375 6.375 19 C 0.057 3.943 20 C 0.216 3.784 21 H 0.114 0.886 22 C -0.016 4.016 23 C -0.161 4.161 24 C -0.202 4.202 25 C -0.029 4.029 26 O -0.180 6.180 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 -12.017 -2.606 12.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.837 5.837 3 C 0.126 3.874 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 S 2.794 3.206 13 O -0.984 6.984 14 O -0.933 6.933 15 N -0.843 5.843 16 C -0.032 4.032 17 C -0.029 4.029 18 O -0.293 6.293 19 C -0.022 4.022 20 C 0.109 3.891 21 H 0.132 0.868 22 C -0.067 4.067 23 C -0.182 4.182 24 C -0.221 4.221 25 C -0.097 4.097 26 O -0.077 6.077 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.333 -12.604 -1.972 12.761 hybrid contribution -0.041 1.220 -0.799 1.459 sum 0.292 -11.384 -2.772 11.720 Atomic orbital electron populations 1.21273 0.80281 1.02345 1.00432 1.57642 1.14054 1.23598 1.88448 1.19204 0.92136 0.78606 0.97487 1.21547 1.36435 1.06728 0.92839 0.92044 1.24935 0.95245 0.96520 0.97108 1.69942 1.36821 1.15121 1.30788 0.86555 0.77961 0.78814 0.84761 1.19663 1.20991 1.20862 1.02021 0.73012 0.72756 0.72842 1.93528 1.65598 1.58880 1.80389 1.93634 1.42668 1.85179 1.71778 1.58455 1.10753 1.86991 1.28076 1.21995 0.90029 0.98906 0.92231 1.22964 0.84098 0.96574 0.99293 1.87940 1.14769 1.94619 1.31978 1.23001 0.93038 0.95584 0.90534 1.19924 0.78742 1.00216 0.90218 0.86832 1.21488 1.01091 0.92567 0.91512 1.21266 0.99138 0.99631 0.98136 1.21547 1.04250 0.97822 0.98482 1.23551 0.91936 0.99681 0.94502 1.83820 1.49267 1.45396 1.29242 0.93772 0.90433 0.93182 0.94629 0.93051 0.92676 0.89888 0.89533 0.92477 0.87762 0.92242 0.87369 0.83916 0.84330 0.79186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.26 59.85 0.61 2.41 16 2 N -1.00 -20.70 3.23 -123.05 -0.40 -21.09 16 3 C 0.25 6.08 5.40 -5.19 -0.03 6.05 16 4 C -0.54 -13.70 9.38 -34.44 -0.32 -14.02 16 5 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -24.95 13.29 55.43 0.74 -24.22 16 8 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 S 2.78 56.51 5.52 -107.50 -0.59 55.92 16 13 O -1.00 -21.32 16.91 -57.17 -0.97 -22.28 16 14 O -0.95 -21.07 10.14 -66.99 -0.68 -21.75 16 15 N -1.00 -17.55 3.39 -107.21 -0.36 -17.91 16 16 C 0.09 1.37 6.72 -3.54 -0.02 1.34 16 17 C 0.05 0.61 6.98 37.30 0.26 0.87 16 18 O -0.38 -5.21 10.74 -35.23 -0.38 -5.59 16 19 C 0.06 0.78 6.27 37.31 0.23 1.01 16 20 C 0.22 3.54 3.57 -68.54 -0.24 3.29 16 21 H 0.11 1.86 8.11 -51.93 -0.42 1.44 16 22 C -0.02 -0.28 3.42 -35.62 -0.12 -0.40 16 23 C -0.16 -2.94 10.04 -39.70 -0.40 -3.34 16 24 C -0.20 -3.37 10.75 -39.70 -0.43 -3.80 16 25 C -0.03 -0.46 11.41 29.42 0.34 -0.13 16 26 O -0.18 -3.23 9.23 -18.39 -0.17 -3.40 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 29 H 0.05 0.75 6.87 -51.93 -0.36 0.40 16 30 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.05 1.39 6.99 -51.93 -0.36 1.03 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.16 6.87 -51.92 -0.36 0.80 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 38 H 0.11 1.23 8.14 -51.92 -0.42 0.81 16 39 H 0.14 2.56 8.06 -52.49 -0.42 2.13 16 40 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 41 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -32.65 347.04 -8.51 -41.15 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.68 Total: 3.71 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.22 Total: -5.09 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -0.02 Total: -63.22 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -2.19 Total: -53.02 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 56.51 SS G_CDS: -0.59 Total: 55.92 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.65 -8.51 -41.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609740802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.609 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds