Wall clock time and date at job start Tue Mar 31 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99534 * 2 1 4 4 C 1.53003 * 109.46716 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47192 * 64.99948 * 4 3 2 6 6 C 1.46500 * 119.99908 * 274.99769 * 5 4 3 7 7 C 1.50703 * 109.47010 * 275.00494 * 6 5 4 8 8 H 1.07998 * 120.00114 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99773 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00254 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99837 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47462 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47478 * 119.99532 * 11 9 7 14 14 H 1.48506 * 109.47162 * 239.99620 * 11 9 7 15 15 S 1.65598 * 120.00103 * 95.00229 * 5 4 3 16 16 O 1.42103 * 106.40324 * 156.45521 * 15 5 4 17 17 O 1.42104 * 106.40505 * 23.53426 * 15 5 4 18 18 C 1.76194 * 107.21910 * 269.99664 * 15 5 4 19 19 C 1.38260 * 120.39118 * 270.00145 * 18 15 5 20 20 N 1.31846 * 120.88733 * 180.02562 * 19 18 15 21 21 C 1.31844 * 121.78099 * 359.97438 * 20 19 18 22 22 C 1.38706 * 120.68465 * 359.97438 * 21 20 19 23 23 O 1.35909 * 120.47167 * 180.02562 * 22 21 20 24 24 C 1.42901 * 117.00282 * 359.97438 * 23 22 21 25 25 C 1.38542 * 120.39047 * 89.99417 * 18 15 5 26 26 H 1.09001 * 109.47214 * 299.99930 * 1 2 3 27 27 H 1.09002 * 109.47171 * 60.00202 * 1 2 3 28 28 H 1.09002 * 109.46566 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47297 * 60.00115 * 3 2 1 30 30 H 1.09009 * 109.47190 * 299.99850 * 3 2 1 31 31 H 1.08995 * 109.47026 * 304.99190 * 4 3 2 32 32 H 1.09002 * 109.46885 * 185.00249 * 4 3 2 33 33 H 1.08991 * 109.47200 * 34.99953 * 6 5 4 34 34 H 1.08997 * 109.47287 * 155.00664 * 6 5 4 35 35 H 0.96995 * 120.00363 * 180.02562 * 10 9 7 36 36 H 1.08000 * 119.55243 * 0.04531 * 19 18 15 37 37 H 1.08004 * 119.65420 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47164 * 179.97438 * 24 23 22 39 39 H 1.08999 * 109.47133 * 300.00865 * 24 23 22 40 40 H 1.09007 * 109.46745 * 60.00676 * 24 23 22 41 41 H 1.07996 * 120.81169 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0004 -0.8949 -1.3781 7 6 5.2994 -1.4244 -0.8273 8 1 6.0333 -0.7421 -0.4246 9 6 5.5514 -2.7800 -0.8386 10 7 4.6580 -3.6109 -1.3294 11 14 7.1618 -3.4363 -0.1565 12 1 7.9903 -2.3047 0.3320 13 1 6.8814 -4.3660 0.9669 14 1 7.8944 -4.1597 -1.2267 15 16 4.4454 1.5130 -2.5263 16 8 5.3008 0.7115 -3.3295 17 8 4.8426 2.7601 -1.9728 18 6 3.0093 1.8337 -3.4953 19 6 2.6577 0.9836 -4.5274 20 7 1.5854 1.2145 -5.2590 21 6 0.8073 2.2562 -5.0412 22 6 1.0942 3.1535 -4.0231 23 8 0.2888 4.2257 -3.8020 24 6 -0.8449 4.3732 -4.6593 25 6 2.2189 2.9407 -3.2320 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6885 1.8465 -0.8901 31 1 3.8514 0.5684 0.8410 32 1 3.9785 2.1766 0.0890 33 1 3.1680 -1.3218 -0.8189 34 1 3.9120 -1.1709 -2.4288 35 1 4.8350 -4.5645 -1.3370 36 1 3.2695 0.1186 -4.7368 37 1 -0.0626 2.4126 -5.6619 38 1 -1.4014 5.2663 -4.3752 39 1 -0.5097 4.4667 -5.6922 40 1 -1.4887 3.4988 -4.5639 41 1 2.4697 3.6218 -2.4323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619592113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:52 Heat of formation + Delta-G solvation = -105.907272 kcal Electronic energy + Delta-G solvation = -27571.028869 eV Core-core repulsion = 23579.642375 eV Total energy + Delta-G solvation = -3991.386493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.78809 -38.31756 -37.84165 -36.74361 -35.43419 -35.26280 -32.76337 -32.49137 -30.71166 -29.55924 -27.86707 -26.78344 -25.72089 -24.02504 -23.42349 -22.83853 -21.79004 -19.18109 -18.04391 -17.37742 -17.17740 -16.75184 -16.58175 -16.18609 -16.04565 -15.84624 -15.72722 -15.08197 -14.66195 -14.46806 -14.30497 -13.86557 -13.54009 -13.36178 -12.97522 -12.61612 -12.31056 -12.25348 -12.11233 -11.98299 -11.83605 -11.67057 -11.54435 -11.28732 -11.20942 -11.02940 -10.85930 -10.64324 -10.39713 -10.22141 -9.96456 -9.72592 -9.55248 -9.37666 -8.74598 -8.36265 -8.06070 -5.98013 -4.01264 0.45362 0.91617 1.07832 2.84294 3.32718 3.36568 3.44084 3.48946 3.66837 4.07712 4.19363 4.27272 4.34872 4.51117 4.62903 4.69359 4.76613 4.86767 4.93955 5.10118 5.22103 5.30375 5.37476 5.40559 5.49979 5.54774 5.57116 5.65993 5.69523 5.75551 5.85636 6.17563 6.26105 6.50245 6.88358 7.36760 7.43029 7.46350 7.66837 7.74052 7.99253 8.28852 9.00724 9.62760 11.10599 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.015297 B = 0.004464 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.022814 B = 6271.146407 C = 6778.923600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.039 3.961 4 C 0.121 3.879 5 N -0.969 5.969 6 C 0.254 3.746 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.283 1.283 15 S 2.685 3.315 16 O -0.931 6.931 17 O -0.971 6.971 18 C -0.689 4.689 19 C 0.169 3.831 20 N -0.460 5.460 21 C 0.062 3.938 22 C 0.049 3.951 23 O -0.310 6.310 24 C 0.023 3.977 25 C -0.010 4.010 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.262 0.738 36 H 0.179 0.821 37 H 0.162 0.838 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.930 14.272 -2.762 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.040 4.040 4 C -0.006 4.006 5 N -0.809 5.809 6 C 0.133 3.867 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.209 1.209 15 S 2.769 3.231 16 O -0.921 6.921 17 O -0.961 6.961 18 C -0.772 4.772 19 C 0.010 3.990 20 N -0.170 5.170 21 C -0.096 4.096 22 C 0.001 3.999 23 O -0.222 6.222 24 C -0.072 4.072 25 C -0.037 4.037 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.196 0.804 37 H 0.179 0.821 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.270 13.799 -3.537 18.800 hybrid contribution -0.314 0.238 0.518 0.651 sum -12.584 14.037 -3.019 19.092 Atomic orbital electron populations 1.22696 0.82432 1.02508 0.98924 1.88140 1.18328 1.26713 1.95081 1.23206 0.95756 0.85501 0.99513 1.21368 0.90708 0.99509 0.89020 1.57378 1.81489 1.19094 1.22890 1.19259 0.98530 0.70776 0.98132 1.21520 1.02527 0.92145 1.40428 0.92104 1.24895 0.96872 0.96765 0.95357 1.69936 1.34453 1.03063 1.45789 0.86499 0.83735 0.78921 0.78595 1.19667 1.21097 1.20917 1.02496 0.73849 0.73107 0.73611 1.93628 1.60837 1.68547 1.69090 1.93505 1.80433 1.44033 1.78165 1.32634 1.25098 1.04040 1.15453 1.22614 0.91724 0.96629 0.88003 1.67712 1.04448 1.17913 1.26902 1.23212 0.99603 0.91020 0.95739 1.20005 0.93077 0.89602 0.97196 1.86096 1.37383 1.42283 1.56447 1.23142 0.86608 1.03206 0.94271 1.20573 0.90322 0.95165 0.97683 0.94677 0.95014 0.89762 0.92761 0.94318 0.88040 0.88550 0.92443 0.94708 0.92854 0.80354 0.82086 0.87748 0.92371 0.92365 0.82606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.36 -6.22 9.02 -35.23 -0.32 -6.54 16 3 C 0.04 0.57 6.28 37.16 0.23 0.80 16 4 C 0.12 2.01 6.13 -4.04 -0.02 1.98 16 5 N -0.97 -19.51 2.75 -115.67 -0.32 -19.83 16 6 C 0.25 6.26 4.94 -5.19 -0.03 6.24 16 7 C -0.53 -14.50 9.38 -34.44 -0.32 -14.83 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 11 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 S 2.68 51.92 5.66 -107.50 -0.61 51.32 16 16 O -0.93 -21.24 16.28 -57.17 -0.93 -22.17 16 17 O -0.97 -18.82 15.91 -57.17 -0.91 -19.73 16 18 C -0.69 -11.40 5.99 -39.46 -0.24 -11.63 16 19 C 0.17 2.83 10.68 -17.54 -0.19 2.64 16 20 N -0.46 -7.13 10.36 -13.12 -0.14 -7.27 16 21 C 0.06 0.79 10.22 -17.37 -0.18 0.61 16 22 C 0.05 0.63 6.71 -39.07 -0.26 0.37 16 23 O -0.31 -3.35 10.51 -19.45 -0.20 -3.55 16 24 C 0.02 0.14 9.82 101.05 0.99 1.14 16 25 C -0.01 -0.15 8.47 -39.13 -0.33 -0.48 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.53 6.97 -51.92 -0.36 0.17 16 31 H 0.10 1.75 8.11 -51.93 -0.42 1.33 16 32 H 0.10 1.40 6.91 -51.93 -0.36 1.04 16 33 H 0.06 1.48 6.60 -51.93 -0.34 1.14 16 34 H 0.04 0.91 7.61 -51.93 -0.40 0.51 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.18 2.99 7.63 -52.49 -0.40 2.59 16 37 H 0.16 1.43 6.32 -52.48 -0.33 1.10 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.30 7.68 -51.93 -0.40 -0.09 16 40 H 0.06 0.31 7.68 -51.92 -0.40 -0.09 16 41 H 0.16 2.01 7.71 -52.49 -0.40 1.61 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -34.51 359.77 -7.09 -41.60 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.47 Total: -0.75 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 0.67 Total: -9.95 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.28 Total: -52.35 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -2.36 Total: -51.99 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 51.92 SS G_CDS: -0.61 Total: 51.32 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.51 -7.09 -41.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619592113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.310 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds