Wall clock time and date at job start Tue Mar 31 2020 05:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00218 * 2 1 4 4 H 1.48494 * 109.47165 * 270.00543 * 3 2 1 5 5 H 1.48503 * 109.47178 * 30.00546 * 3 2 1 6 6 H 1.48503 * 109.46998 * 150.00232 * 3 2 1 7 7 C 1.38951 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99529 * 359.97438 * 7 2 1 9 9 N 1.37090 * 120.00058 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00124 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99820 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00154 * 179.97438 * 10 9 7 13 13 O 1.45206 * 109.47009 * 180.02562 * 12 10 9 14 14 C 1.34755 * 116.99856 * 180.02562 * 13 12 10 15 15 O 1.21518 * 119.99817 * 359.97438 * 14 13 12 16 16 C 1.47378 * 119.99812 * 179.97438 * 14 13 12 17 17 C 1.36668 * 125.78024 * 179.97438 * 16 14 13 18 18 N 1.34784 * 106.83741 * 179.73707 * 17 16 14 19 19 C 1.46500 * 126.58671 * 180.23977 * 18 17 16 20 20 C 1.50705 * 109.46576 * 125.00421 * 19 18 17 21 21 C 1.38232 * 119.99907 * 269.72443 * 20 19 18 22 22 C 1.38240 * 119.99639 * 179.76865 * 21 20 19 23 23 C 1.38235 * 119.99972 * 0.51154 * 22 21 20 24 24 C 1.38229 * 120.00230 * 359.74564 * 23 22 21 25 25 C 1.38235 * 119.99842 * 90.00461 * 20 19 18 26 26 N 1.40209 * 106.82741 * 0.24874 * 18 17 16 27 27 N 1.28756 * 108.38331 * 359.97438 * 26 18 17 28 28 H 0.97006 * 119.99805 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00214 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47106 * 60.00576 * 12 10 9 31 31 H 1.08993 * 109.47190 * 299.99910 * 12 10 9 32 32 H 1.08002 * 126.58419 * 0.02562 * 17 16 14 33 33 H 1.08994 * 109.47273 * 245.00311 * 19 18 17 34 34 H 1.08997 * 109.47167 * 5.00809 * 19 18 17 35 35 H 1.07999 * 120.00142 * 0.02562 * 21 20 19 36 36 H 1.07998 * 119.99925 * 180.23020 * 22 21 20 37 37 H 1.08004 * 119.99652 * 179.72168 * 23 22 21 38 38 H 1.08002 * 120.00305 * 179.97438 * 24 23 22 39 39 H 1.07999 * 120.00337 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6527 0.7002 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1386 -0.0005 9 7 3.3797 -1.2034 -0.0011 10 6 4.0536 -2.3706 -0.0011 11 8 3.4471 -3.4211 -0.0001 12 6 5.5606 -2.3707 -0.0022 13 8 6.0446 -3.7397 -0.0026 14 6 7.3805 -3.9163 -0.0031 15 8 8.1207 -2.9526 -0.0037 16 6 7.9437 -5.2782 -0.0029 17 6 9.2737 -5.5929 -0.0039 18 7 9.3565 -6.9382 0.0026 19 6 10.5843 -7.7374 0.0091 20 6 10.5579 -8.6891 1.1774 21 6 11.0843 -8.3025 2.3957 22 6 11.0557 -9.1737 3.4687 23 6 10.5103 -10.4352 3.3203 24 6 9.9887 -10.8237 2.1006 25 6 10.0125 -9.9506 1.0291 26 7 8.0420 -7.4259 0.0016 27 7 7.2363 -6.4215 -0.0045 28 1 -0.4850 0.8401 0.0004 29 1 3.8648 -0.3634 -0.0014 30 1 5.9246 -1.8565 0.8873 31 1 5.9233 -1.8573 -0.8927 32 1 10.0998 -4.8972 -0.0045 33 1 10.6541 -8.3039 -0.9194 34 1 11.4471 -7.0773 0.0977 35 1 11.5141 -7.3184 2.5105 36 1 11.4636 -8.8704 4.4215 37 1 10.4920 -11.1175 4.1574 38 1 9.5629 -11.8094 1.9845 39 1 9.6049 -10.2541 0.0761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731240749.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:23 Heat of formation + Delta-G solvation = 18.115565 kcal Electronic energy + Delta-G solvation = -25792.274360 eV Core-core repulsion = 21703.114700 eV Total energy + Delta-G solvation = -4089.159660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.47468 -40.12634 -39.71028 -38.22999 -36.15907 -35.45336 -33.98796 -32.08088 -31.73916 -31.43605 -31.18381 -28.64938 -27.39301 -24.84527 -23.75866 -23.08651 -23.04136 -21.77342 -20.74692 -19.57606 -18.59087 -18.41008 -17.35425 -16.93382 -16.67161 -16.35680 -16.17511 -15.70304 -15.42469 -15.31558 -14.95637 -14.86046 -14.13546 -13.94457 -13.79416 -13.65123 -13.35971 -13.12313 -12.91369 -12.46029 -12.40637 -12.17679 -12.04370 -11.84207 -11.58791 -11.37534 -11.21843 -10.72832 -10.67893 -10.60179 -10.48447 -9.98970 -9.61618 -9.59549 -9.42718 -9.40181 -8.58339 -8.22558 -6.32844 -3.85377 0.56667 0.82919 0.90742 1.44879 1.80023 2.59278 2.96514 3.03311 3.07656 3.15992 3.28813 3.63497 3.75974 3.96888 4.03450 4.09196 4.34579 4.43104 4.47148 4.55397 4.60382 4.67403 4.85210 4.94912 4.99647 5.13625 5.17112 5.31456 5.39646 5.51115 5.55917 5.60277 5.74453 5.91243 5.95691 5.98541 6.01890 6.43470 6.44699 7.49883 7.62555 7.89518 8.08037 8.55023 8.90857 9.36667 9.73518 10.79609 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.026625 B = 0.001939 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.391243 B =14433.537637 C =14789.528692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.122 0.878 9 N -0.581 5.581 10 C 0.448 3.552 11 O -0.551 6.551 12 C 0.057 3.943 13 O -0.304 6.304 14 C 0.554 3.446 15 O -0.513 6.513 16 C -0.081 4.081 17 C 0.100 3.900 18 N -0.360 5.360 19 C 0.165 3.835 20 C -0.122 4.122 21 C -0.097 4.097 22 C -0.124 4.124 23 C -0.104 4.104 24 C -0.122 4.122 25 C -0.081 4.081 26 N -0.054 5.054 27 N -0.171 5.171 28 H 0.275 0.725 29 H 0.373 0.627 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.209 0.791 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.091 -15.795 2.830 34.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.140 0.860 9 N -0.222 5.222 10 C 0.233 3.767 11 O -0.431 6.431 12 C -0.020 4.020 13 O -0.216 6.216 14 C 0.397 3.603 15 O -0.401 6.401 16 C -0.218 4.218 17 C -0.057 4.057 18 N -0.144 5.144 19 C 0.045 3.955 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.142 4.142 23 C -0.123 4.123 24 C -0.140 4.140 25 C -0.099 4.099 26 N -0.035 5.035 27 N -0.046 5.046 28 H 0.085 0.915 29 H 0.206 0.794 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.225 0.775 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 28.800 -17.344 2.811 33.737 hybrid contribution 1.350 2.393 0.081 2.748 sum 30.150 -14.952 2.892 33.778 Atomic orbital electron populations 1.69620 1.05633 1.27642 1.48716 1.25035 0.95521 0.98021 0.97428 0.86674 0.79856 0.83907 0.79029 1.19458 1.20038 1.19346 1.19431 0.78693 0.96878 1.48413 0.85999 1.42015 1.07592 1.05632 1.66962 1.19182 0.86900 0.85176 0.85421 1.90639 1.68932 1.30649 1.52928 1.22829 0.95336 0.80121 1.03747 1.86717 1.21475 1.31043 1.82389 1.19473 0.81504 0.86758 0.72609 1.90854 1.60909 1.40911 1.47473 1.20250 0.90099 0.92250 1.19238 1.23295 0.98997 0.85834 0.97586 1.50686 1.09172 1.05024 1.49515 1.20900 0.82238 0.93395 0.98952 1.19647 1.02683 0.95195 0.94715 1.21070 0.98705 0.99517 0.92278 1.21167 1.00107 0.94127 0.98785 1.21303 0.97013 0.96364 0.97595 1.21217 0.99673 1.00076 0.92998 1.21106 0.96469 0.92818 0.99548 1.82130 0.82224 1.17282 1.21831 1.74935 1.25399 0.96458 1.07806 0.91472 0.79434 0.89173 0.89155 0.77476 0.87263 0.86699 0.85863 0.85655 0.85720 0.85502 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 19.32 27.74 -169.99 -4.71 14.60 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 7 C -0.31 -8.74 10.16 -14.94 -0.15 -8.89 16 8 H 0.12 3.97 7.39 -52.48 -0.39 3.59 16 9 N -0.58 -14.12 5.09 -10.96 -0.06 -14.18 16 10 C 0.45 10.77 7.86 -10.99 -0.09 10.68 16 11 O -0.55 -15.84 16.08 -14.12 -0.23 -16.07 16 12 C 0.06 1.07 5.95 36.01 0.21 1.28 16 13 O -0.30 -5.97 9.76 -47.32 -0.46 -6.43 16 14 C 0.55 9.10 7.96 34.45 0.27 9.38 16 15 O -0.51 -8.30 16.65 -19.28 -0.32 -8.62 16 16 C -0.08 -1.16 7.02 -83.57 -0.59 -1.75 16 17 C 0.10 0.93 11.27 -16.82 -0.19 0.74 16 18 N -0.36 -3.23 3.68 -62.23 -0.23 -3.46 16 19 C 0.17 0.77 6.67 -5.19 -0.03 0.73 16 20 C -0.12 -0.77 5.33 -104.62 -0.56 -1.32 16 21 C -0.10 -0.59 9.70 -39.58 -0.38 -0.98 16 22 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 23 C -0.10 -0.65 10.05 -39.59 -0.40 -1.04 16 24 C -0.12 -0.79 10.05 -39.58 -0.40 -1.18 16 25 C -0.08 -0.55 9.70 -39.58 -0.38 -0.93 16 26 N -0.05 -0.72 13.63 60.35 0.82 0.10 16 27 N -0.17 -2.80 12.39 32.83 0.41 -2.39 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.21 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.11 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.11 0.15 8.02 -51.93 -0.42 -0.27 16 35 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 37 H 0.12 0.54 8.06 -52.48 -0.42 0.11 16 38 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -38.08 359.17 -5.78 -43.86 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.01 Total: 5.36 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -3.18 Total: 6.65 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 1.72 Total: -44.77 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.01 Total: -31.12 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.08 -5.78 -43.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240749.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.977 kcal (2) G-P(sol) polarization free energy of solvation -38.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds