Wall clock time and date at job start Tue Mar 31 2020 05:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 119.99855 * 2 1 4 4 H 1.48502 * 109.47312 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46802 * 299.99289 * 3 2 1 6 6 H 1.48502 * 109.47615 * 59.99396 * 3 2 1 7 7 C 1.38949 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00160 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99930 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99769 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.46947 * 179.97438 * 12 10 9 14 14 C 1.34780 * 116.99823 * 179.97438 * 13 12 10 15 15 O 1.21534 * 120.00313 * 0.02562 * 14 13 12 16 16 C 1.47190 * 119.99643 * 179.97438 * 14 13 12 17 17 C 1.39896 * 120.13440 * 359.73221 * 16 14 13 18 18 C 1.36534 * 120.09342 * 180.24900 * 17 16 14 19 19 C 1.39243 * 120.37148 * 0.04159 * 18 17 16 20 20 N 1.39797 * 119.86873 * 179.97438 * 19 18 17 21 21 C 1.36638 * 125.67884 * 179.67521 * 20 19 18 22 22 C 1.34808 * 108.19523 * 179.82983 * 21 20 19 23 23 C 1.40989 * 107.48246 * 0.42343 * 22 21 20 24 24 C 1.34814 * 107.48066 * 359.73448 * 23 22 21 25 25 C 1.38779 * 120.26506 * 359.96173 * 19 18 17 26 26 C 1.38482 * 119.90150 * 0.02562 * 25 19 18 27 27 O 1.35647 * 120.18574 * 180.02562 * 26 25 19 28 28 H 0.96998 * 119.99814 * 0.02562 * 1 2 3 29 29 H 0.97007 * 119.99503 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47436 * 59.99760 * 12 10 9 31 31 H 1.09002 * 109.47263 * 299.99430 * 12 10 9 32 32 H 1.07997 * 119.95346 * 0.27148 * 17 16 14 33 33 H 1.07998 * 119.81221 * 180.02562 * 18 17 16 34 34 H 1.08003 * 125.90134 * 359.97438 * 21 20 19 35 35 H 1.07996 * 126.26462 * 180.15948 * 22 21 20 36 36 H 1.07996 * 126.25892 * 179.71578 * 23 22 21 37 37 H 1.08002 * 125.89631 * 179.97438 * 24 23 22 38 38 H 1.08005 * 120.05229 * 180.02562 * 25 19 18 39 39 H 0.96701 * 113.99793 * 269.98172 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3963 -1.2127 6 1 1.8893 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0030 12 6 1.2439 -4.8629 0.0010 13 8 2.1875 -5.9666 0.0017 14 6 1.6723 -7.2120 0.0019 15 8 0.4674 -7.3713 0.0009 16 6 2.5689 -8.3793 0.0020 17 6 3.9563 -8.1992 -0.0036 18 6 4.7872 -9.2825 -0.0086 19 6 4.2625 -10.5723 -0.0090 20 7 5.1230 -11.6740 -0.0146 21 6 4.7389 -12.9853 -0.0093 22 6 5.8495 -13.7493 -0.0215 23 6 6.9606 -12.8815 -0.0248 24 6 6.4882 -11.6188 -0.0206 25 6 2.8886 -10.7685 -0.0035 26 6 2.0355 -9.6776 0.0019 27 8 0.6918 -9.8627 0.0078 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6182 -4.9209 -0.8896 31 1 0.6162 -4.9205 0.8903 32 1 4.3705 -7.2019 -0.0037 33 1 5.8575 -9.1383 -0.0125 34 1 3.7213 -13.3471 0.0003 35 1 5.8823 -14.8288 -0.0235 36 1 8.0000 -13.1746 -0.0296 37 1 7.0858 -10.7192 -0.0212 38 1 2.4853 -11.7704 -0.0034 39 1 0.2981 -9.9149 -0.8739 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731243390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:25 Heat of formation + Delta-G solvation = -72.364865 kcal Electronic energy + Delta-G solvation = -26169.485517 eV Core-core repulsion = 22044.109580 eV Total energy + Delta-G solvation = -4125.375937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07972 -40.65777 -39.33252 -38.05728 -37.19980 -35.94694 -34.02651 -33.54730 -31.40642 -30.96442 -29.86659 -29.07617 -28.18308 -24.94620 -24.19446 -23.31666 -21.58999 -20.52584 -20.45791 -19.60320 -19.25387 -18.08929 -17.99083 -17.56630 -16.71701 -16.32957 -15.89801 -15.64628 -15.52200 -15.14891 -14.75923 -14.51420 -14.30600 -14.20017 -13.98689 -13.90558 -13.44693 -12.88379 -12.71901 -12.68478 -12.44225 -12.25874 -12.19632 -11.91113 -11.64355 -11.22762 -11.16960 -10.42970 -10.40845 -10.39126 -10.30068 -10.22850 -9.63810 -9.35342 -8.66649 -8.55168 -8.46693 -8.10579 -6.52069 -3.94154 0.05314 0.77065 1.78555 2.33431 2.58017 2.61071 2.62979 3.10147 3.22518 3.29743 3.31266 3.71142 3.72891 4.08918 4.20632 4.40476 4.53085 4.58065 4.67269 4.78989 4.92780 5.04081 5.13139 5.13469 5.23603 5.41333 5.45456 5.52755 5.67767 5.74630 5.81051 5.84387 5.89612 6.03695 6.10669 6.49194 6.55897 6.75168 6.96729 7.28485 7.45994 7.81173 7.93950 8.46023 9.04971 9.37109 9.86613 10.65162 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.002080 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.915174 B =13455.074922 C =14564.293115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.552 5.552 10 C 0.439 3.561 11 O -0.577 6.577 12 C 0.063 3.937 13 O -0.323 6.323 14 C 0.504 3.496 15 O -0.496 6.496 16 C -0.166 4.166 17 C -0.011 4.011 18 C -0.165 4.165 19 C 0.192 3.808 20 N -0.400 5.400 21 C -0.015 4.015 22 C -0.187 4.187 23 C -0.188 4.188 24 C -0.011 4.011 25 C -0.189 4.189 26 C 0.206 3.794 27 O -0.473 6.473 28 H 0.273 0.727 29 H 0.395 0.605 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.159 0.841 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.169 0.831 38 H 0.145 0.855 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.532 -24.698 -1.730 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.461 6.461 12 C -0.015 4.015 13 O -0.238 6.238 14 C 0.348 3.652 15 O -0.386 6.386 16 C -0.168 4.168 17 C -0.029 4.029 18 C -0.185 4.185 19 C 0.098 3.902 20 N -0.073 5.073 21 C -0.141 4.141 22 C -0.211 4.211 23 C -0.212 4.212 24 C -0.137 4.137 25 C -0.209 4.209 26 C 0.159 3.841 27 O -0.285 6.285 28 H 0.083 0.917 29 H 0.229 0.771 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.177 0.823 33 H 0.160 0.840 34 H 0.184 0.816 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.187 0.813 38 H 0.163 0.837 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 6.737 -24.324 -1.135 25.265 hybrid contribution -0.543 0.804 -0.446 1.068 sum 6.194 -23.520 -1.580 24.373 Atomic orbital electron populations 1.69621 1.06005 1.28407 1.49654 1.25322 0.95698 0.99899 0.96889 0.85739 0.79699 0.80730 0.77811 1.19086 1.20618 1.20617 1.19775 0.93504 0.81722 1.48116 0.87540 1.41714 1.09400 1.04096 1.63742 1.19302 0.88323 0.84052 0.85987 1.90552 1.13405 1.86804 1.55355 1.22759 0.90792 0.84319 1.03608 1.86583 1.40077 1.13837 1.83323 1.20781 0.87078 0.83526 0.73791 1.90861 1.15581 1.86770 1.45364 1.19632 0.93710 0.90996 1.12463 1.21184 0.91078 1.00458 0.90222 1.20585 1.01408 0.89742 1.06735 1.17896 0.89191 0.86533 0.96592 1.41663 1.05773 1.04628 1.55210 1.21978 1.00341 0.81546 1.10227 1.21057 0.91818 0.99439 1.08764 1.21067 0.99322 0.91944 1.08844 1.22030 0.81743 1.00131 1.09793 1.20917 0.90737 0.99994 1.09225 1.18060 0.84034 0.89296 0.92679 1.84749 1.15525 1.94331 1.33900 0.91658 0.77135 0.89468 0.89424 0.82293 0.84036 0.81611 0.83994 0.83932 0.81348 0.83739 0.73939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.89 13.05 55.50 0.72 -23.17 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -13.82 5.29 -10.96 -0.06 -13.88 16 10 C 0.44 10.42 7.86 -10.99 -0.09 10.33 16 11 O -0.58 -15.69 16.08 -14.11 -0.23 -15.92 16 12 C 0.06 1.18 5.96 36.01 0.21 1.40 16 13 O -0.32 -5.92 8.99 -47.39 -0.43 -6.35 16 14 C 0.50 8.14 7.88 34.37 0.27 8.41 16 15 O -0.50 -8.67 14.95 -26.63 -0.40 -9.06 16 16 C -0.17 -2.15 5.89 -104.84 -0.62 -2.77 16 17 C -0.01 -0.12 9.55 -39.58 -0.38 -0.50 16 18 C -0.17 -1.55 9.37 -39.82 -0.37 -1.92 16 19 C 0.19 1.82 6.62 -83.65 -0.55 1.27 16 20 N -0.40 -3.63 2.97 -60.92 -0.18 -3.81 16 21 C -0.02 -0.13 10.72 -16.63 -0.18 -0.30 16 22 C -0.19 -1.47 10.86 -39.76 -0.43 -1.90 16 23 C -0.19 -1.49 10.86 -39.75 -0.43 -1.92 16 24 C -0.01 -0.09 10.72 -16.63 -0.18 -0.27 16 25 C -0.19 -1.75 9.38 -39.29 -0.37 -2.11 16 26 C 0.21 2.30 6.72 -38.69 -0.26 2.04 16 27 O -0.47 -5.20 11.57 -40.55 -0.47 -5.67 16 28 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 30 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.16 1.85 7.60 -52.49 -0.40 1.45 16 33 H 0.14 1.01 6.66 -52.49 -0.35 0.66 16 34 H 0.17 0.95 6.99 -52.48 -0.37 0.58 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.17 1.00 6.98 -52.49 -0.37 0.63 16 38 H 0.14 1.03 6.67 -52.48 -0.35 0.68 16 39 H 0.40 2.73 9.06 45.56 0.41 3.14 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -34.25 351.05 -7.32 -41.57 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -2.94 Total: 11.59 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -3.61 Total: 3.90 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.49 Total: -40.86 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.52 Total: -37.01 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.25 -7.32 -41.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.797 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds