Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 120.00499 * 2 1 4 4 H 1.48494 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46497 * 299.99451 * 3 2 1 6 6 H 1.48502 * 109.47002 * 59.99070 * 3 2 1 7 7 C 1.38954 * 119.99418 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99615 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00057 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99853 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99936 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00202 * 180.02562 * 10 9 7 13 13 O 1.45203 * 109.47591 * 180.02562 * 12 10 9 14 14 C 1.34232 * 117.00291 * 180.02562 * 13 12 10 15 15 O 1.20827 * 119.99531 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99693 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.46655 * 179.97438 * 16 14 13 18 18 C 1.39735 * 127.05774 * 125.00169 * 17 16 14 19 19 N 1.31423 * 105.88732 * 179.97438 * 18 17 16 20 20 N 1.28597 * 108.72321 * 359.97438 * 19 18 17 21 21 C 1.40201 * 124.61116 * 179.97438 * 20 19 18 22 22 C 1.38845 * 120.06329 * 0.02755 * 21 20 19 23 23 C 1.38125 * 119.92894 * 179.97438 * 22 21 20 24 24 C 1.38273 * 120.06983 * 0.02562 * 23 22 21 25 25 C 1.38285 * 120.13319 * 359.97311 * 24 23 22 26 26 C 1.38118 * 120.06657 * 0.02992 * 25 24 23 27 27 N 1.28597 * 110.77882 * 0.24731 * 20 19 18 28 28 H 0.97008 * 119.99689 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00506 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47445 * 59.99581 * 12 10 9 31 31 H 1.09001 * 109.47003 * 300.00295 * 12 10 9 32 32 H 1.08997 * 109.46781 * 60.00420 * 16 14 13 33 33 H 1.08997 * 109.47296 * 299.99794 * 16 14 13 34 34 H 1.08001 * 127.05354 * 359.94564 * 18 17 16 35 35 H 1.07998 * 120.03280 * 0.24936 * 22 21 20 36 36 H 1.08000 * 119.96142 * 179.97438 * 23 22 21 37 37 H 1.07998 * 119.93720 * 179.97438 * 24 23 22 38 38 H 1.07999 * 119.96304 * 180.02562 * 25 24 23 39 39 H 1.08001 * 120.03360 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8896 2.3962 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8630 0.0000 13 8 2.1869 -5.9667 0.0007 14 6 1.6738 -7.2071 -0.0002 15 8 0.4759 -7.3652 -0.0012 16 6 2.5918 -8.4022 -0.0002 17 6 1.7709 -9.6660 -0.0007 18 6 1.8490 -10.7204 -0.9143 19 7 0.9533 -11.6002 -0.5257 20 7 0.3655 -11.1533 0.5271 21 6 -0.6505 -11.8279 1.2189 22 6 -1.0875 -13.0692 0.7763 23 6 -2.0882 -13.7316 1.4602 24 6 -2.6549 -13.1595 2.5843 25 6 -2.2217 -11.9233 3.0275 26 6 -1.2215 -11.2560 2.3478 27 7 0.8322 -10.0010 0.8559 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3907 -0.0002 30 1 0.6171 -4.9205 -0.8903 31 1 0.6164 -4.9208 0.8897 32 1 3.2199 -8.3778 0.8903 33 1 3.2212 -8.3770 -0.8897 34 1 2.5094 -10.7965 -1.7654 35 1 -0.6424 -13.5183 -0.0992 36 1 -2.4289 -14.6970 1.1162 37 1 -3.4375 -13.6791 3.1172 38 1 -2.6660 -11.4792 3.9060 39 1 -0.8838 -10.2904 2.6942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = 27.402841 kcal Electronic energy + Delta-G solvation = -25879.616951 eV Core-core repulsion = 21790.860017 eV Total energy + Delta-G solvation = -4088.756933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.07882 -40.26999 -39.56425 -38.13469 -36.16411 -34.62930 -33.99270 -33.17520 -31.65060 -31.37161 -31.15031 -29.12562 -27.90226 -24.71586 -24.34806 -23.55682 -22.00123 -21.63855 -20.34262 -19.56305 -18.77584 -18.06254 -17.63954 -16.92665 -16.67301 -16.40811 -16.30327 -15.65670 -15.39445 -15.15524 -14.53888 -14.48930 -14.38908 -14.10131 -13.92895 -13.79424 -13.36058 -13.02990 -12.87533 -12.25955 -12.08746 -11.95475 -11.71560 -11.63939 -11.60677 -11.14788 -10.99074 -10.70986 -10.51051 -10.38842 -10.38639 -10.34350 -10.26381 -9.61086 -9.49592 -8.69624 -8.51111 -8.07757 -6.49544 -3.91482 0.35412 0.85372 1.81538 1.92411 2.00888 2.34374 2.82635 3.12169 3.24237 3.30911 3.31943 3.64572 3.74622 4.11774 4.31910 4.41735 4.49436 4.59500 4.66167 4.80237 4.86412 4.97108 5.08530 5.14000 5.15594 5.19736 5.28871 5.51010 5.55983 5.68415 5.70751 5.72014 5.89082 5.93331 6.02464 6.06945 6.21652 6.64800 6.66034 7.48502 7.86659 7.97848 8.00325 8.49158 9.07735 9.40152 9.89968 10.67772 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.023294 B = 0.001932 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.756597 B =14486.473264 C =15410.246436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.062 3.938 13 O -0.325 6.325 14 C 0.459 3.541 15 O -0.501 6.501 16 C -0.021 4.021 17 C 0.016 3.984 18 C -0.001 4.001 19 N -0.291 5.291 20 N -0.105 5.105 21 C 0.145 3.855 22 C -0.106 4.106 23 C -0.104 4.104 24 C -0.115 4.115 25 C -0.102 4.102 26 C -0.102 4.102 27 N -0.254 5.254 28 H 0.273 0.727 29 H 0.395 0.605 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.207 0.793 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 -27.019 2.516 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.191 5.191 10 C 0.224 3.776 11 O -0.460 6.460 12 C -0.015 4.015 13 O -0.240 6.240 14 C 0.300 3.700 15 O -0.389 6.389 16 C -0.060 4.060 17 C -0.148 4.148 18 C -0.184 4.184 19 N -0.128 5.128 20 N 0.003 4.997 21 C 0.055 3.945 22 C -0.126 4.126 23 C -0.123 4.123 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.122 4.122 27 N -0.093 5.093 28 H 0.083 0.917 29 H 0.228 0.772 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.224 0.776 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.168 -27.508 3.155 28.000 hybrid contribution 0.234 1.413 -0.584 1.547 sum -3.934 -26.095 2.571 26.515 Atomic orbital electron populations 1.69627 1.06009 1.28360 1.49784 1.25324 0.95696 0.99894 0.96945 0.85736 0.79710 0.80739 0.77784 1.19071 1.20638 1.20644 1.19781 0.93512 0.81744 1.48029 0.87528 1.41717 1.09379 1.04115 1.63865 1.19329 0.88335 0.84080 0.85890 1.90561 1.13392 1.86809 1.55224 1.22732 0.90820 0.84488 1.03485 1.86526 1.40288 1.14032 1.83116 1.23313 0.88610 0.84814 0.73285 1.90698 1.16707 1.86686 1.44774 1.19469 0.95181 0.83460 1.07910 1.22539 0.98410 0.98588 0.95256 1.24779 1.00017 0.91290 1.02359 1.74037 1.09506 1.26931 1.02366 1.44758 1.26373 1.10859 1.17717 1.17446 0.89841 0.93065 0.94118 1.20959 0.97819 0.92719 1.01130 1.21060 0.95725 1.00184 0.95329 1.21361 0.99818 0.95598 0.96582 1.21107 0.96075 0.94923 0.99934 1.21053 0.96521 1.01193 0.93473 1.74111 1.10962 0.99004 1.25271 0.91694 0.77171 0.89597 0.89575 0.85443 0.84889 0.77642 0.84078 0.84657 0.85067 0.84526 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.55 -14.04 5.29 -10.96 -0.06 -14.10 16 10 C 0.44 10.58 7.86 -10.99 -0.09 10.50 16 11 O -0.58 -15.91 16.08 -14.12 -0.23 -16.14 16 12 C 0.06 1.19 5.94 36.00 0.21 1.41 16 13 O -0.33 -5.90 9.76 -45.91 -0.45 -6.34 16 14 C 0.46 7.09 7.95 36.01 0.29 7.38 16 15 O -0.50 -9.12 15.35 -18.75 -0.29 -9.41 16 16 C -0.02 -0.22 6.41 -29.04 -0.19 -0.40 16 17 C 0.02 0.19 6.12 -82.21 -0.50 -0.31 16 18 C 0.00 -0.01 12.16 -17.17 -0.21 -0.22 16 19 N -0.29 -3.61 11.21 30.69 0.34 -3.26 16 20 N -0.11 -1.41 4.13 32.49 0.13 -1.27 16 21 C 0.15 1.66 6.72 -83.58 -0.56 1.10 16 22 C -0.11 -0.96 9.59 -39.40 -0.38 -1.33 16 23 C -0.10 -0.69 10.04 -39.61 -0.40 -1.09 16 24 C -0.11 -0.71 10.04 -39.55 -0.40 -1.11 16 25 C -0.10 -0.76 10.04 -39.61 -0.40 -1.15 16 26 C -0.10 -1.04 9.59 -39.40 -0.38 -1.42 16 27 N -0.25 -3.65 10.62 33.73 0.36 -3.29 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 30 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 31 H 0.09 1.53 8.13 -51.93 -0.42 1.10 16 32 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.14 1.20 7.63 -52.49 -0.40 0.80 16 36 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 38 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.14 1.57 7.63 -52.49 -0.40 1.17 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -36.33 357.40 -6.35 -42.68 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.02 Total: 8.10 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -3.23 Total: 5.40 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 1.50 Total: -45.36 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.96 Total: -31.89 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.33 -6.35 -42.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.079 kcal (2) G-P(sol) polarization free energy of solvation -36.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds