Wall clock time and date at job start Tue Mar 31 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99699 * 2 1 4 4 C 1.50701 * 109.47396 * 84.99673 * 3 2 1 5 5 O 1.21280 * 119.99781 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99622 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99622 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.47064 * 179.97438 * 7 6 4 9 9 C 1.34515 * 125.79060 * 89.99944 * 8 7 6 10 10 C 1.41380 * 106.83832 * 179.97438 * 9 8 7 11 11 C 1.34506 * 106.84493 * 359.97438 * 10 9 8 12 12 O 1.34306 * 125.78568 * 269.69282 * 8 7 6 13 13 S 1.65595 * 120.00153 * 179.97438 * 2 1 3 14 14 O 1.42102 * 104.27481 * 26.07915 * 13 2 1 15 15 O 1.42102 * 104.27958 * 153.93067 * 13 2 1 16 16 C 1.81396 * 104.45234 * 270.00566 * 13 2 1 17 17 C 1.53008 * 109.46931 * 179.97438 * 16 13 2 18 18 C 1.50702 * 109.46736 * 180.02562 * 17 16 13 19 19 H 1.08000 * 119.99988 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99927 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99781 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00305 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47024 * 59.99220 * 22 20 18 24 24 H 1.48492 * 109.47481 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46587 * 299.99647 * 22 20 18 26 26 H 1.09005 * 109.46735 * 90.00418 * 1 2 3 27 27 H 1.08999 * 109.47581 * 210.00292 * 1 2 3 28 28 H 1.08998 * 109.47550 * 330.01010 * 1 2 3 29 29 H 1.09001 * 109.46891 * 324.99332 * 3 2 1 30 30 H 1.09002 * 109.46910 * 204.99636 * 3 2 1 31 31 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 32 32 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 33 33 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 34 34 H 1.07996 * 126.58016 * 0.03378 * 9 8 7 35 35 H 1.08006 * 126.57610 * 179.97438 * 10 9 8 36 36 H 1.08005 * 125.79499 * 180.02562 * 11 10 9 37 37 H 1.08997 * 109.46985 * 299.99899 * 16 13 2 38 38 H 1.08999 * 109.47208 * 60.00219 * 16 13 2 39 39 H 1.08997 * 109.47250 * 299.99794 * 17 16 13 40 40 H 1.08999 * 109.46950 * 60.00117 * 17 16 13 41 41 H 0.96999 * 120.00070 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7659 1.4154 5 8 1.8773 1.1237 2.3337 6 7 2.9847 2.9244 1.6605 7 6 3.1241 3.4079 3.0364 8 6 3.8777 4.7130 3.0364 9 6 3.3297 5.9378 2.9407 10 6 4.3944 6.8671 2.9815 11 6 5.5292 6.1547 3.1002 12 8 5.2098 4.8507 3.1376 13 16 2.2930 -1.4341 0.0006 14 8 1.3970 -2.3563 -0.6044 15 8 3.5395 -1.1193 -0.6047 16 6 2.5192 -1.8254 1.7574 17 6 3.2808 -3.1457 1.8918 18 6 3.4682 -3.4711 3.3513 19 1 3.0830 -2.8029 4.1073 20 6 4.1322 -4.6214 3.7214 21 7 4.6017 -5.4348 2.8007 22 14 4.3639 -5.0252 5.5304 23 1 3.0361 -5.1515 6.1834 24 1 5.1031 -6.3064 5.6609 25 1 5.1361 -3.9387 6.1850 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 1.6501 2.0043 -0.5896 30 1 3.1857 1.1178 -0.4343 31 1 3.3555 3.4382 0.9261 32 1 2.1356 3.5587 3.4704 33 1 3.6716 2.6727 3.6263 34 1 2.2782 6.1672 2.8510 35 1 4.3123 7.9427 2.9276 36 1 6.5276 6.5623 3.1593 37 1 3.0865 -1.0279 2.2371 38 1 1.5450 -1.9179 2.2374 39 1 2.7132 -3.9430 1.4121 40 1 4.2550 -3.0536 1.4116 41 1 5.0685 -6.2442 3.0611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732215698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:05 Heat of formation + Delta-G solvation = -86.447144 kcal Electronic energy + Delta-G solvation = -26092.395749 eV Core-core repulsion = 22101.853110 eV Total energy + Delta-G solvation = -3990.542639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.94931 -39.86575 -36.63409 -36.05636 -35.42067 -35.03680 -33.78054 -33.33299 -31.08053 -31.02882 -28.80006 -26.28505 -25.51951 -24.65665 -22.13252 -21.51822 -20.97966 -20.80723 -18.63535 -18.10893 -17.59965 -17.16259 -16.68862 -16.43789 -16.22329 -15.48289 -15.44249 -15.33768 -14.66939 -14.48690 -14.35483 -14.03537 -13.59117 -13.23971 -13.21180 -13.09140 -13.01909 -12.72196 -12.41778 -12.37870 -12.06933 -11.64968 -11.57726 -11.33718 -11.28770 -10.98782 -10.87538 -10.50766 -10.34537 -10.26735 -10.24615 -9.67826 -9.37692 -9.29911 -8.97591 -8.71410 -8.42404 -6.04824 -4.09244 0.80185 1.22339 2.16499 2.46019 2.54373 2.87021 3.24968 3.33138 3.36892 3.39935 4.20073 4.31678 4.44361 4.57422 4.61022 4.63702 4.67322 4.70444 5.03344 5.19216 5.20206 5.27440 5.30207 5.41184 5.54097 5.60081 5.68999 5.78832 5.79537 5.85393 6.03534 6.05112 6.09361 6.50596 6.67433 6.74819 7.21169 7.39618 7.45116 7.89647 8.01154 8.27613 8.94386 9.54747 11.06361 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.010033 B = 0.003473 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.166222 B = 8060.118371 C =10111.489164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.991 5.991 3 C 0.100 3.900 4 C 0.488 3.512 5 O -0.515 6.515 6 N -0.730 5.730 7 C 0.201 3.799 8 C -0.034 4.034 9 C -0.187 4.187 10 C -0.220 4.220 11 C -0.029 4.029 12 O -0.169 6.169 13 S 2.587 3.413 14 O -0.961 6.961 15 O -0.968 6.968 16 C -0.575 4.575 17 C 0.028 3.972 18 C -0.516 4.516 19 H 0.061 0.939 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.404 0.596 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.205 0.795 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 25.986 -3.592 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.825 5.825 3 C -0.030 4.030 4 C 0.272 3.728 5 O -0.389 6.389 6 N -0.386 5.386 7 C 0.077 3.923 8 C -0.084 4.084 9 C -0.207 4.207 10 C -0.239 4.239 11 C -0.097 4.097 12 O -0.064 6.064 13 S 2.686 3.314 14 O -0.951 6.951 15 O -0.959 6.959 16 C -0.709 4.709 17 C -0.011 4.011 18 C -0.555 4.555 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.531 5.531 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.129 0.871 30 H 0.143 0.857 31 H 0.239 0.761 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.221 0.779 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.865 24.625 -3.753 25.208 hybrid contribution 0.214 0.660 1.408 1.570 sum -3.651 25.286 -2.345 25.655 Atomic orbital electron populations 1.21396 0.78152 1.03269 1.01614 1.57434 1.15249 1.20024 1.89824 1.21165 1.00649 0.88017 0.93156 1.21646 0.77834 0.80391 0.92936 1.90783 1.46718 1.55514 1.45924 1.46053 1.59423 1.24477 1.08628 1.19591 0.98782 0.89071 0.84812 1.22331 0.81060 0.96947 1.08081 1.21705 1.00777 0.91531 1.06649 1.21883 0.92214 1.00974 1.08865 1.24170 1.00627 0.80056 1.04848 1.84091 1.24062 1.27923 1.70353 1.05900 0.73440 0.72437 0.79594 1.93540 1.64744 1.61365 1.75489 1.93506 1.43794 1.82843 1.75717 1.30366 1.10544 1.10213 1.19797 1.18977 0.94853 0.87348 0.99928 1.20996 1.36761 1.06862 0.90907 0.92030 1.25063 0.95390 0.96119 0.97947 1.69949 1.37543 1.12706 1.32940 0.86532 0.78378 0.77626 0.84758 1.20074 1.21128 1.20118 0.92535 0.90708 0.91448 0.87132 0.85666 0.76149 0.88179 0.89253 0.83181 0.83249 0.77885 0.85991 0.86090 0.94984 0.95069 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.18 10.20 59.85 0.61 1.79 16 2 N -0.99 -13.89 2.61 -123.05 -0.32 -14.21 16 3 C 0.10 1.08 6.12 -5.19 -0.03 1.05 16 4 C 0.49 5.80 7.89 -10.99 -0.09 5.71 16 5 O -0.52 -8.09 15.01 5.56 0.08 -8.01 16 6 N -0.73 -6.57 5.55 -61.47 -0.34 -6.91 16 7 C 0.20 1.87 6.20 -5.19 -0.03 1.83 16 8 C -0.03 -0.30 6.69 -35.62 -0.24 -0.54 16 9 C -0.19 -1.42 10.81 -39.70 -0.43 -1.85 16 10 C -0.22 -1.52 10.91 -39.71 -0.43 -1.95 16 11 C -0.03 -0.20 12.09 29.41 0.36 0.15 16 12 O -0.17 -1.65 10.65 5.68 0.06 -1.59 16 13 S 2.59 49.18 5.38 -107.50 -0.58 48.60 16 14 O -0.96 -20.57 17.09 -57.54 -0.98 -21.55 16 15 O -0.97 -20.10 16.53 -57.54 -0.95 -21.05 16 16 C -0.57 -12.25 5.64 37.16 0.21 -12.04 16 17 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 18 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 19 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 22 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.93 7.79 -51.93 -0.40 0.52 16 28 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.11 0.73 8.11 -51.93 -0.42 0.31 16 30 H 0.13 1.34 6.82 -51.93 -0.35 0.98 16 31 H 0.40 2.59 8.46 -40.82 -0.35 2.25 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.20 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.12 2.54 7.22 -51.93 -0.37 2.16 16 38 H 0.12 2.44 8.14 -51.92 -0.42 2.01 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -38.35 368.61 -8.05 -46.40 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.67 Total: 1.27 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -0.63 Total: -18.95 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.07 Total: -47.67 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -1.79 Total: -52.20 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 49.18 SS G_CDS: -0.58 Total: 48.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.35 -8.05 -46.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732215698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.046 kcal (2) G-P(sol) polarization free energy of solvation -38.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds