Wall clock time and date at job start Tue Mar 31 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00145 * 2 1 4 4 H 1.48503 * 109.46913 * 270.00149 * 3 2 1 5 5 H 1.48499 * 109.46841 * 29.99359 * 3 2 1 6 6 H 1.48496 * 109.47262 * 149.99990 * 3 2 1 7 7 C 1.37880 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00046 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99888 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47433 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00430 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99580 * 0.02562 * 11 10 9 13 13 C 1.50690 * 119.99978 * 180.02562 * 11 10 9 14 14 O 1.45204 * 109.46967 * 180.02562 * 13 11 10 15 15 C 1.34678 * 116.99724 * 180.02562 * 14 13 11 16 16 O 1.21424 * 120.00496 * 0.02562 * 15 14 13 17 17 C 1.48082 * 119.99793 * 179.97438 * 15 14 13 18 18 C 1.39168 * 119.69605 * 179.97438 * 17 15 14 19 19 C 1.39290 * 118.96930 * 180.02562 * 18 17 15 20 20 N 1.39934 * 120.82224 * 179.97438 * 19 18 17 21 21 C 1.35824 * 126.10172 * 179.71432 * 20 19 18 22 22 C 1.35289 * 107.61473 * 179.83542 * 21 20 19 23 23 C 1.39948 * 107.97087 * 0.42198 * 22 21 20 24 24 N 1.30826 * 108.36174 * 359.73509 * 23 22 21 25 25 C 1.39280 * 118.35842 * 359.97438 * 19 18 17 26 26 C 1.38375 * 119.28129 * 0.03170 * 25 19 18 27 27 N 1.31574 * 120.98014 * 359.96674 * 26 25 19 28 28 H 0.96990 * 119.99991 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47274 * 60.00098 * 9 7 2 30 30 H 1.08998 * 109.47616 * 300.00269 * 9 7 2 31 31 H 0.96998 * 119.99523 * 0.02562 * 10 9 7 32 32 H 1.08998 * 109.47035 * 60.00956 * 13 11 10 33 33 H 1.08995 * 109.47686 * 300.00648 * 13 11 10 34 34 H 1.07990 * 120.51600 * 359.97438 * 18 17 15 35 35 H 1.07997 * 126.19791 * 359.96179 * 21 20 19 36 36 H 1.08003 * 126.01588 * 180.18092 * 22 21 20 37 37 H 1.07999 * 125.82230 * 179.73676 * 23 22 21 38 38 H 1.08004 * 120.35973 * 179.97438 * 25 19 18 39 39 H 1.08001 * 119.50440 * 180.25600 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0022 11 6 5.3250 -2.8216 0.0024 12 8 6.1131 -1.8997 0.0021 13 6 5.8273 -4.2423 0.0030 14 8 7.2793 -4.2423 0.0036 15 6 7.8907 -5.4424 0.0037 16 8 7.2294 -6.4607 0.0027 17 6 9.3695 -5.5199 0.0038 18 6 9.9947 -6.7632 0.0043 19 6 11.3865 -6.8185 0.0050 20 7 12.0552 -8.0477 0.0061 21 6 13.4017 -8.2262 0.0013 22 6 13.6381 -9.5583 0.0082 23 6 12.4028 -10.2160 0.0076 24 7 11.4555 -9.3137 0.0064 25 6 12.0962 -5.6200 0.0045 26 6 11.4025 -4.4227 0.0040 27 7 10.0869 -4.4022 0.0034 28 1 -0.4849 0.8400 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.8753 -0.6804 -0.8888 31 1 3.3696 -3.3125 0.0021 32 1 5.4641 -4.7564 -0.8869 33 1 5.4639 -4.7559 0.8930 34 1 9.4099 -7.6711 0.0051 35 1 14.1485 -7.4461 -0.0046 36 1 14.6092 -10.0309 0.0095 37 1 12.2564 -11.2860 0.0081 38 1 13.1762 -5.6252 0.0053 39 1 11.9491 -3.4913 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736852877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:09 Heat of formation + Delta-G solvation = 14.670028 kcal Electronic energy + Delta-G solvation = -25655.383045 eV Core-core repulsion = 21566.073976 eV Total energy + Delta-G solvation = -4089.309069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.18904 -41.05083 -39.98216 -38.78450 -36.52577 -34.99804 -34.34751 -32.43064 -32.32483 -31.03284 -30.36814 -29.53414 -27.32563 -25.50855 -24.60198 -22.80086 -22.05147 -21.45246 -20.90839 -20.10338 -19.20896 -17.95583 -17.60734 -16.80591 -16.71488 -16.51146 -16.32475 -15.95267 -15.86882 -15.29828 -15.05238 -14.92400 -14.63847 -14.15370 -14.12854 -14.10842 -13.42812 -13.24939 -13.11365 -12.76473 -12.45564 -12.34983 -12.06676 -11.54102 -11.40565 -11.12205 -11.03546 -10.84723 -10.74065 -10.18627 -9.98655 -9.93615 -9.91517 -9.52820 -9.31713 -9.05510 -8.80298 -8.24424 -6.22904 -4.25856 -0.16357 0.21739 1.47434 1.57337 2.10153 2.13879 2.17387 3.05662 3.26661 3.27111 3.33312 3.41864 3.53636 3.68676 3.93458 4.04180 4.20704 4.24819 4.32438 4.40315 4.63402 4.78027 4.93405 4.95934 5.04202 5.11573 5.15520 5.16693 5.23719 5.29491 5.34530 5.75845 5.95062 6.08253 6.36873 6.75139 6.94698 7.03013 7.09342 7.14753 7.33492 7.52128 8.06662 8.43066 8.70109 8.82064 9.36293 10.88869 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.036866 B = 0.001827 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.317469 B =15322.222314 C =16061.093414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.700 5.700 11 C 0.502 3.498 12 O -0.531 6.531 13 C 0.046 3.954 14 O -0.301 6.301 15 C 0.523 3.477 16 O -0.492 6.492 17 C 0.126 3.874 18 C -0.112 4.112 19 C 0.201 3.799 20 N -0.332 5.332 21 C 0.055 3.945 22 C -0.252 4.252 23 C 0.063 3.937 24 N -0.282 5.282 25 C -0.171 4.171 26 C 0.131 3.869 27 N -0.434 5.434 28 H 0.268 0.732 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.399 0.601 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.165 0.835 35 H 0.183 0.817 36 H 0.159 0.841 37 H 0.194 0.806 38 H 0.151 0.849 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.496 -18.890 0.028 35.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.351 5.351 11 C 0.285 3.715 12 O -0.408 6.408 13 C -0.032 4.032 14 O -0.214 6.214 15 C 0.364 3.636 16 O -0.380 6.380 17 C -0.011 4.011 18 C -0.134 4.134 19 C 0.100 3.900 20 N -0.109 5.109 21 C -0.086 4.086 22 C -0.280 4.280 23 C -0.125 4.125 24 N -0.099 5.099 25 C -0.194 4.194 26 C -0.029 4.029 27 N -0.146 5.146 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.233 0.767 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.183 0.817 35 H 0.200 0.800 36 H 0.177 0.823 37 H 0.211 0.789 38 H 0.169 0.831 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 28.874 -17.305 0.033 33.663 hybrid contribution 1.282 -0.616 -0.026 1.423 sum 30.157 -17.922 0.007 35.080 Atomic orbital electron populations 1.69876 1.06212 1.27492 1.49217 1.24787 0.94798 0.99179 0.93790 0.86817 0.80599 0.83191 0.79107 1.19796 1.20853 1.18429 1.21073 0.88360 0.95345 1.53608 0.90115 1.19553 0.95318 0.77964 0.97093 1.46053 1.04793 1.11521 1.72691 1.19857 0.83724 0.89321 0.78583 1.90723 1.55252 1.45531 1.49324 1.22947 0.77390 0.97744 1.05102 1.86723 1.21765 1.30505 1.82429 1.20619 0.87562 0.82023 0.73354 1.90884 1.65581 1.36165 1.45325 1.19849 0.91388 0.88861 1.00982 1.21748 0.92708 0.99802 0.99134 1.17523 0.91433 0.82650 0.98382 1.45932 1.04498 1.03990 1.56487 1.22849 0.85110 0.99147 1.01474 1.21713 0.99896 0.92309 1.14130 1.24236 0.90514 1.00150 0.97643 1.77579 1.21919 0.86871 1.23529 1.22178 1.02223 0.91279 1.03678 1.22859 0.89020 0.97598 0.93460 1.67800 1.08203 1.29700 1.08882 0.92203 0.95408 0.95857 0.76720 0.87992 0.87998 0.81703 0.80037 0.82338 0.78877 0.83140 0.80349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.96 55.43 0.77 -25.58 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.70 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.55 -14.89 9.83 -34.44 -0.34 -15.23 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.22 5.44 4.50 -5.19 -0.02 5.42 16 10 N -0.70 -14.05 5.55 -61.47 -0.34 -14.39 16 11 C 0.50 9.78 7.91 -10.99 -0.09 9.70 16 12 O -0.53 -12.57 16.50 -14.11 -0.23 -12.81 16 13 C 0.05 0.69 5.95 36.00 0.21 0.90 16 14 O -0.30 -4.96 9.57 -47.11 -0.45 -5.42 16 15 C 0.52 7.66 7.95 34.77 0.28 7.94 16 16 O -0.49 -7.57 16.11 -19.21 -0.31 -7.88 16 17 C 0.13 1.58 6.74 -83.06 -0.56 1.02 16 18 C -0.11 -1.22 9.26 -38.85 -0.36 -1.58 16 19 C 0.20 1.77 6.73 -83.38 -0.56 1.21 16 20 N -0.33 -2.81 3.81 -10.42 -0.04 -2.85 16 21 C 0.05 0.29 10.86 -16.83 -0.18 0.11 16 22 C -0.25 -1.22 10.80 -39.99 -0.43 -1.65 16 23 C 0.06 0.40 12.02 -17.34 -0.21 0.19 16 24 N -0.28 -2.71 11.97 30.64 0.37 -2.35 16 25 C -0.17 -1.02 9.54 -39.14 -0.37 -1.40 16 26 C 0.13 0.99 11.17 -17.61 -0.20 0.79 16 27 N -0.43 -5.24 10.11 -9.87 -0.10 -5.34 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 30 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 31 H 0.40 6.88 8.32 -40.82 -0.34 6.54 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.17 1.91 7.38 -52.49 -0.39 1.52 16 35 H 0.18 0.25 7.13 -52.49 -0.37 -0.12 16 36 H 0.16 0.33 8.06 -52.48 -0.42 -0.09 16 37 H 0.19 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.15 0.31 6.88 -52.48 -0.36 -0.05 16 39 H 0.18 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -37.41 355.60 -6.49 -43.90 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -3.92 Total: 1.12 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -2.93 Total: 9.54 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.66 Total: -50.51 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.99 Total: -26.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.41 -6.49 -43.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736852877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.573 kcal (2) G-P(sol) polarization free energy of solvation -37.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds