Wall clock time and date at job start Tue Mar 31 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48494 * 109.47191 * 29.99481 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00169 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99922 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00037 * 180.02562 * 11 10 9 14 14 O 1.45206 * 109.47021 * 180.02562 * 13 11 10 15 15 C 1.34675 * 117.00050 * 179.97438 * 14 13 11 16 16 O 1.21435 * 120.00185 * 0.02562 * 15 14 13 17 17 C 1.48063 * 120.00362 * 179.97438 * 15 14 13 18 18 C 1.39271 * 119.69302 * 179.72804 * 17 15 14 19 19 C 1.38713 * 119.18672 * 179.77320 * 18 17 15 20 20 C 1.38402 * 118.55497 * 0.49368 * 19 18 17 21 21 C 1.39284 * 119.30863 * 359.74742 * 20 19 18 22 22 N 1.39816 * 119.61796 * 180.02562 * 21 20 19 23 23 C 1.35847 * 126.10490 * 179.69224 * 22 21 20 24 24 C 1.35280 * 107.61527 * 179.89848 * 23 22 21 25 25 C 1.39961 * 107.96631 * 0.36259 * 24 23 22 26 26 N 1.30811 * 108.36838 * 359.77535 * 25 24 23 27 27 N 1.31965 * 120.76713 * 0.02562 * 21 20 19 28 28 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47476 * 59.99992 * 9 7 2 30 30 H 1.09004 * 109.47043 * 300.00066 * 9 7 2 31 31 H 0.96996 * 119.99986 * 0.02562 * 10 9 7 32 32 H 1.09000 * 109.47247 * 60.00371 * 13 11 10 33 33 H 1.09001 * 109.47358 * 299.99798 * 13 11 10 34 34 H 1.07998 * 120.40584 * 359.97438 * 18 17 15 35 35 H 1.07994 * 120.72002 * 180.23867 * 19 18 17 36 36 H 1.08002 * 120.34504 * 179.72980 * 20 19 18 37 37 H 1.08000 * 126.19580 * 0.02562 * 23 22 21 38 38 H 1.07996 * 126.02103 * 180.17714 * 24 23 22 39 39 H 1.07998 * 125.81581 * 179.75069 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 5.3250 -2.8215 0.0009 12 8 6.1131 -1.8996 0.0014 13 6 5.8274 -4.2423 0.0002 14 8 7.2794 -4.2422 0.0009 15 6 7.8909 -5.4421 0.0009 16 8 7.2296 -6.4606 -0.0001 17 6 9.3695 -5.5197 0.0010 18 6 9.9951 -6.7640 0.0068 19 6 11.3809 -6.8244 0.0021 20 6 12.0948 -5.6387 0.0022 21 6 11.4060 -4.4281 0.0017 22 7 12.1207 -3.2264 0.0012 23 6 11.5865 -1.9773 -0.0052 24 6 12.6111 -1.0940 -0.0009 25 6 13.8074 -1.8203 0.0000 26 7 13.5155 -3.0954 0.0012 27 7 10.0866 -4.4021 0.0016 28 1 -0.4849 0.8400 -0.0004 29 1 3.8746 -0.6800 0.8911 30 1 3.8752 -0.6803 -0.8889 31 1 3.3697 -3.3125 0.0002 32 1 5.4642 -4.7556 -0.8901 33 1 5.4641 -4.7566 0.8899 34 1 9.4084 -7.6707 0.0116 35 1 11.8916 -7.7759 0.0025 36 1 13.1747 -5.6520 0.0029 37 1 10.5344 -1.7336 -0.0105 38 1 12.5217 -0.0177 -0.0014 39 1 14.8022 -1.3998 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736934568.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:12 Heat of formation + Delta-G solvation = 17.041217 kcal Electronic energy + Delta-G solvation = -26115.146894 eV Core-core repulsion = 22025.940647 eV Total energy + Delta-G solvation = -4089.206247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.95211 -41.03546 -39.98395 -38.83322 -36.59994 -34.39237 -34.13113 -33.31881 -32.44586 -30.71200 -30.12889 -29.49709 -27.34682 -25.46036 -24.56671 -22.57518 -21.93558 -21.31275 -20.80452 -20.15079 -18.90173 -18.31026 -17.57753 -16.87702 -16.85111 -16.54316 -16.25295 -15.91706 -15.78047 -15.17289 -14.96679 -14.89750 -14.24369 -14.08243 -13.99531 -13.70011 -13.28602 -13.15126 -13.03847 -12.83656 -12.58310 -12.38924 -12.10976 -11.28322 -11.23957 -11.07573 -10.97565 -10.89807 -10.77926 -10.52855 -10.28313 -10.01265 -9.55771 -9.54195 -9.36710 -8.83063 -8.75653 -8.28580 -6.25369 -4.28516 -0.10453 0.33614 1.55430 1.64658 2.08615 2.12279 2.45624 3.00600 3.24555 3.27245 3.31300 3.39320 3.48721 3.82682 3.98692 4.29888 4.33280 4.38188 4.45976 4.61637 4.75907 4.84836 4.98311 5.08306 5.09950 5.11882 5.18602 5.30937 5.45426 5.47135 5.65033 5.75451 6.02132 6.16561 6.65000 6.71223 6.79923 6.99549 7.07277 7.28308 7.30433 7.47496 8.03089 8.39538 8.66378 8.78231 9.33690 10.86387 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.002519 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.250796 B =11114.689234 C =13133.490796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.502 3.498 12 O -0.532 6.532 13 C 0.046 3.954 14 O -0.304 6.304 15 C 0.524 3.476 16 O -0.493 6.493 17 C 0.132 3.868 18 C -0.119 4.119 19 C -0.057 4.057 20 C -0.136 4.136 21 C 0.374 3.626 22 N -0.332 5.332 23 C 0.088 3.912 24 C -0.265 4.265 25 C 0.069 3.931 26 N -0.291 5.291 27 N -0.456 5.456 28 H 0.268 0.732 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.399 0.601 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.190 0.810 38 H 0.159 0.841 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.713 -12.788 0.018 29.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.410 6.410 13 C -0.032 4.032 14 O -0.217 6.217 15 C 0.366 3.634 16 O -0.380 6.380 17 C -0.005 4.005 18 C -0.140 4.140 19 C -0.083 4.083 20 C -0.158 4.158 21 C 0.143 3.857 22 N -0.110 5.110 23 C -0.053 4.053 24 C -0.293 4.293 25 C -0.120 4.120 26 N -0.109 5.109 27 N -0.171 5.171 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.233 0.767 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.178 0.822 35 H 0.176 0.824 36 H 0.174 0.826 37 H 0.207 0.793 38 H 0.177 0.823 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 26.783 -12.693 0.027 29.639 hybrid contribution -0.136 0.675 -0.027 0.689 sum 26.648 -12.018 0.000 29.232 Atomic orbital electron populations 1.69872 1.06217 1.27521 1.49153 1.24788 0.94803 0.99192 0.93787 0.86819 0.80589 0.83197 0.79115 1.19782 1.20842 1.18440 1.21061 0.88326 0.95337 1.53665 0.90118 1.19556 0.95354 0.77918 0.97082 1.46058 1.04786 1.11556 1.72594 1.19857 0.83741 0.89309 0.78581 1.90713 1.55271 1.45548 1.49428 1.22953 0.77336 0.97772 1.05103 1.86718 1.21850 1.30724 1.82411 1.20647 0.87490 0.82019 0.73226 1.90880 1.65398 1.36115 1.45602 1.19663 0.90455 0.88590 1.01823 1.22144 0.95470 0.98300 0.98091 1.21557 0.93003 0.98870 0.94907 1.21942 1.02832 0.90630 1.00380 1.17581 0.87071 0.83930 0.97086 1.45780 1.04764 1.03368 1.57097 1.23176 1.01462 0.83084 0.97578 1.21736 0.91063 1.01207 1.15311 1.24187 1.00350 0.90206 0.97214 1.77401 0.88000 1.20087 1.25458 1.66779 1.05506 1.32093 1.12708 0.92177 0.95406 0.95873 0.76705 0.87978 0.87986 0.82194 0.82418 0.82554 0.79338 0.82336 0.78879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.85 16 7 C -0.55 -14.68 9.83 -34.44 -0.34 -15.02 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.83 16 9 C 0.22 5.35 4.50 -5.20 -0.02 5.32 16 10 N -0.70 -13.67 5.55 -61.47 -0.34 -14.01 16 11 C 0.50 9.46 7.91 -10.99 -0.09 9.37 16 12 O -0.53 -12.20 16.50 -14.11 -0.23 -12.43 16 13 C 0.05 0.66 5.95 36.01 0.21 0.87 16 14 O -0.30 -4.76 9.57 -47.10 -0.45 -5.21 16 15 C 0.52 7.09 7.95 34.76 0.28 7.37 16 16 O -0.49 -6.80 16.11 -19.22 -0.31 -7.11 16 17 C 0.13 1.55 6.74 -83.04 -0.56 0.99 16 18 C -0.12 -0.96 9.63 -39.02 -0.38 -1.34 16 19 C -0.06 -0.35 10.16 -39.35 -0.40 -0.75 16 20 C -0.14 -1.12 9.70 -39.13 -0.38 -1.49 16 21 C 0.37 4.30 7.55 -154.53 -1.17 3.13 16 22 N -0.33 -3.92 3.81 -12.09 -0.05 -3.97 16 23 C 0.09 0.99 11.10 -16.83 -0.19 0.81 16 24 C -0.27 -2.41 10.80 -39.99 -0.43 -2.84 16 25 C 0.07 0.58 12.02 -17.34 -0.21 0.37 16 26 N -0.29 -3.11 11.83 30.64 0.36 -2.75 16 27 N -0.46 -5.92 9.61 -8.86 -0.09 -6.00 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 30 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 31 H 0.40 6.68 8.32 -40.82 -0.34 6.34 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.16 1.02 7.63 -52.49 -0.40 0.62 16 35 H 0.16 0.36 8.06 -52.49 -0.42 -0.06 16 36 H 0.16 1.08 7.68 -52.49 -0.40 0.67 16 37 H 0.19 2.17 8.05 -52.49 -0.42 1.75 16 38 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.19 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -35.52 357.52 -7.40 -42.92 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.02 Total: 3.20 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -3.76 Total: 8.88 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.66 Total: -52.09 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.99 Total: -24.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.52 -7.40 -42.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736934568.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.960 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds