Wall clock time and date at job start Tue Mar 31 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99827 * 2 1 4 4 O 1.20825 * 119.99812 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00027 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47006 * 179.97438 * 5 3 2 7 7 C 1.36890 * 120.00406 * 90.00076 * 6 5 3 8 8 H 1.07991 * 120.00372 * 230.47238 * 7 6 5 9 9 C 1.39033 * 119.99409 * 50.74041 * 7 6 5 10 10 N 1.31379 * 119.99926 * 192.10887 * 9 7 6 11 11 Si 1.86798 * 120.00261 * 12.11402 * 9 7 6 12 12 H 1.48496 * 109.47128 * 5.61748 * 11 9 7 13 13 H 1.48501 * 109.47256 * 125.61523 * 11 9 7 14 14 H 1.48494 * 109.47388 * 245.61442 * 11 9 7 15 15 C 1.34779 * 120.00296 * 269.99835 * 6 5 3 16 16 O 1.21614 * 119.99688 * 357.72288 * 15 6 5 17 17 C 1.47546 * 120.00340 * 177.71515 * 15 6 5 18 18 C 1.40291 * 120.50548 * 219.35940 * 17 15 6 19 19 C 1.38002 * 118.35099 * 179.71084 * 18 17 15 20 20 C 1.39170 * 119.26605 * 0.60705 * 19 18 17 21 21 N 1.39492 * 119.52437 * 179.67796 * 20 19 18 22 22 C 1.37234 * 126.49435 * 184.69121 * 21 20 19 23 23 C 1.34590 * 106.82514 * 179.83943 * 22 21 20 24 24 N 1.34175 * 108.23327 * 0.42371 * 23 22 21 25 25 C 1.30462 * 109.38688 * 359.72894 * 24 23 22 26 26 N 1.32444 * 120.95123 * 359.65194 * 20 19 18 27 27 C 1.31623 * 121.80969 * 0.02562 * 26 20 19 28 28 H 1.08998 * 109.47188 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46859 * 299.99674 * 1 2 3 30 30 H 1.08997 * 109.47655 * 59.99652 * 1 2 3 31 31 H 1.08996 * 109.46778 * 60.00431 * 5 3 2 32 32 H 1.08995 * 109.47268 * 299.99954 * 5 3 2 33 33 H 0.96996 * 119.99858 * 179.97438 * 10 9 7 34 34 H 1.08005 * 120.82279 * 359.97438 * 18 17 15 35 35 H 1.08004 * 120.36627 * 180.28075 * 19 18 17 36 36 H 1.07998 * 126.58497 * 359.97070 * 22 21 20 37 37 H 1.07993 * 125.88547 * 180.15504 * 23 22 21 38 38 H 1.08003 * 125.72840 * 179.97438 * 25 24 23 39 39 H 1.07997 * 119.68894 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.1761 3.3366 1.1841 8 1 3.7071 4.2944 1.3541 9 6 4.9820 2.7730 2.1669 10 7 4.9829 3.2726 3.3820 11 14 6.0637 1.3055 1.7597 12 1 5.9854 1.0216 0.3043 13 1 7.4695 1.6088 2.1299 14 1 5.5963 0.1195 2.5213 15 6 4.1722 3.3258 -1.1685 16 8 4.0398 2.7313 -2.2211 17 6 4.5414 4.7544 -1.1695 18 6 3.9952 5.6304 -2.1194 19 6 4.3666 6.9588 -2.0758 20 6 5.2730 7.3803 -1.1075 21 7 5.6574 8.7205 -1.0628 22 6 6.6020 9.2715 -0.2336 23 6 6.6582 10.5842 -0.5252 24 7 5.7689 10.8368 -1.4976 25 6 5.1630 9.7298 -1.8286 26 7 5.7755 6.5275 -0.2275 27 6 5.4441 5.2537 -0.2287 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.9556 0.7811 -0.8908 32 1 3.9564 0.7807 0.8891 33 1 5.5449 2.8792 4.0677 34 1 3.2979 5.2748 -2.8637 35 1 3.9625 7.6624 -2.7886 36 1 7.1890 8.7511 0.5087 37 1 7.3045 11.3101 -0.0544 38 1 4.3971 9.6314 -2.5836 39 1 5.8745 4.5884 0.5052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737860192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:58 Heat of formation + Delta-G solvation = 13.022117 kcal Electronic energy + Delta-G solvation = -27760.741154 eV Core-core repulsion = 23671.360626 eV Total energy + Delta-G solvation = -4089.380528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.26721 -40.40246 -39.82179 -38.48897 -36.09381 -35.16744 -34.05554 -32.44139 -32.33402 -30.47788 -29.45340 -28.61129 -26.69162 -25.44240 -24.07121 -23.66129 -21.49581 -20.91909 -20.77195 -19.67992 -18.68700 -18.12659 -17.42156 -16.94246 -16.27187 -16.02148 -15.67954 -15.60334 -15.19555 -14.92849 -14.80995 -14.07648 -13.83970 -13.74642 -13.66557 -13.40226 -13.33992 -13.11978 -12.93738 -12.75937 -12.71096 -12.08278 -11.92405 -11.69155 -11.30740 -10.91308 -10.58254 -10.48211 -10.31428 -10.17975 -10.00424 -9.90336 -9.75337 -9.33572 -9.07931 -8.68607 -8.30067 -8.13016 -6.74407 -4.56153 0.68646 1.40410 2.22423 2.53562 2.68656 2.83222 2.87855 3.02826 3.05111 3.10411 3.47726 3.81221 3.92957 4.13676 4.43841 4.56138 4.65126 4.70009 5.01500 5.17589 5.24814 5.27077 5.31105 5.34191 5.44485 5.49273 5.57910 5.64187 5.67658 5.75377 5.81642 6.01659 6.21745 6.40449 6.64447 6.70435 6.77943 6.95209 7.19232 7.67651 7.88404 7.97508 8.07824 8.22789 8.55083 8.86341 9.19821 10.32586 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.003704 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.025582 B = 7557.896693 C = 8626.066087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.448 3.552 4 O -0.490 6.490 5 C 0.117 3.883 6 N -0.442 5.442 7 C -0.357 4.357 8 H 0.105 0.895 9 C 0.073 3.927 10 N -0.842 5.842 11 Si 0.857 3.143 12 H -0.251 1.251 13 H -0.272 1.272 14 H -0.267 1.267 15 C 0.547 3.453 16 O -0.577 6.577 17 C -0.153 4.153 18 C -0.010 4.010 19 C -0.195 4.195 20 C 0.341 3.659 21 N -0.405 5.405 22 C -0.018 4.018 23 C -0.039 4.039 24 N -0.484 5.484 25 C 0.189 3.811 26 N -0.504 5.504 27 C 0.200 3.800 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.281 0.719 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.182 0.818 37 H 0.174 0.826 38 H 0.210 0.790 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 0.638 -5.952 6.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.289 3.711 4 O -0.375 6.375 5 C -0.008 4.008 6 N -0.162 5.162 7 C -0.484 4.484 8 H 0.123 0.877 9 C -0.138 4.138 10 N -0.474 5.474 11 Si 0.682 3.318 12 H -0.174 1.174 13 H -0.198 1.198 14 H -0.193 1.193 15 C 0.337 3.663 16 O -0.461 6.461 17 C -0.158 4.158 18 C -0.037 4.037 19 C -0.217 4.217 20 C 0.113 3.887 21 N -0.086 5.086 22 C -0.149 4.149 23 C -0.184 4.184 24 N -0.201 5.201 25 C -0.092 4.092 26 N -0.216 5.216 27 C 0.042 3.958 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.200 0.800 37 H 0.191 0.809 38 H 0.226 0.774 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.472 1.660 -5.947 6.192 hybrid contribution -0.314 -1.768 0.128 1.801 sum -0.786 -0.109 -5.818 5.872 Atomic orbital electron populations 1.23150 0.77365 1.02951 1.02291 1.86519 1.22787 1.34361 1.84848 1.24725 0.92852 0.81260 0.72301 1.90625 1.66636 1.36286 1.43943 1.21376 0.86524 0.88124 1.04807 1.43153 1.58313 1.08501 1.06234 1.19076 1.30978 1.06984 0.91374 0.87715 1.25552 0.95904 0.97665 0.94703 1.69672 1.36171 1.40385 1.01221 0.87073 0.81520 0.82663 0.80591 1.17441 1.19787 1.19265 1.18006 0.78615 0.86162 0.83561 1.90689 1.55688 1.68127 1.31583 1.20837 1.01294 0.95532 0.98168 1.21443 0.95545 0.91076 0.95602 1.21296 1.01789 0.97378 1.01268 1.18375 0.93707 0.83493 0.93092 1.43098 1.30205 1.05763 1.29567 1.23009 0.97105 0.95053 0.99729 1.22339 1.02151 0.94347 0.99587 1.70292 1.09600 1.25563 1.14665 1.25269 1.02630 0.81483 0.99841 1.67180 1.26862 1.04431 1.23140 1.23623 0.90413 0.88755 0.93021 0.88624 0.92148 0.92308 0.86705 0.87870 0.90812 0.83525 0.84154 0.80042 0.80890 0.77377 0.78829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.54 16 2 O -0.37 -6.24 10.57 -39.27 -0.41 -6.65 16 3 C 0.45 9.02 8.02 36.01 0.29 9.31 16 4 O -0.49 -11.21 16.18 -18.75 -0.30 -11.51 16 5 C 0.12 2.33 4.25 -5.19 -0.02 2.31 16 6 N -0.44 -9.71 1.42 -117.28 -0.17 -9.88 16 7 C -0.36 -8.36 6.50 -15.00 -0.10 -8.46 16 8 H 0.11 2.74 7.45 -52.49 -0.39 2.35 16 9 C 0.07 1.69 5.05 -17.45 -0.09 1.60 16 10 N -0.84 -21.00 13.95 55.50 0.77 -20.22 16 11 Si 0.86 17.22 25.40 -169.99 -4.32 12.90 16 12 H -0.25 -4.87 6.21 56.52 0.35 -4.52 16 13 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 14 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 15 C 0.55 11.80 7.33 -12.46 -0.09 11.71 16 16 O -0.58 -13.16 16.50 5.26 0.09 -13.08 16 17 C -0.15 -2.94 5.37 -104.81 -0.56 -3.50 16 18 C -0.01 -0.16 9.79 -38.90 -0.38 -0.54 16 19 C -0.20 -2.75 9.48 -39.32 -0.37 -3.12 16 20 C 0.34 5.49 7.49 -154.49 -1.16 4.33 16 21 N -0.41 -6.01 2.98 -63.80 -0.19 -6.20 16 22 C -0.02 -0.26 11.16 -16.42 -0.18 -0.44 16 23 C -0.04 -0.53 11.85 -17.82 -0.21 -0.74 16 24 N -0.48 -7.04 11.24 -14.45 -0.16 -7.20 16 25 C 0.19 2.49 11.88 -89.54 -1.06 1.42 16 26 N -0.50 -9.20 9.86 -11.97 -0.12 -9.31 16 27 C 0.20 3.84 9.26 -17.13 -0.16 3.68 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 30 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 31 H 0.12 2.13 7.39 -51.93 -0.38 1.75 16 32 H 0.10 1.98 4.47 -51.93 -0.23 1.75 16 33 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 34 H 0.15 2.13 8.06 -52.48 -0.42 1.71 16 35 H 0.14 1.43 6.75 -52.48 -0.35 1.07 16 36 H 0.18 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.17 1.80 8.06 -52.49 -0.42 1.37 16 38 H 0.21 1.90 7.05 -52.48 -0.37 1.53 16 39 H 0.20 3.93 5.94 -52.49 -0.31 3.62 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -30.43 342.46 -6.45 -36.88 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -3.76 Total: 10.00 kcal Atomic # 6 Polarization: 22.14 SS G_CDS: -3.03 Total: 19.11 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.14 Total: -52.81 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.63 Total: -31.24 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -4.32 Total: 12.90 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.43 -6.45 -36.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737860192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.902 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds