Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48507 * 109.47058 * 270.00525 * 3 2 1 5 5 H 1.48500 * 109.47007 * 30.00031 * 3 2 1 6 6 H 1.48493 * 109.47577 * 150.00405 * 3 2 1 7 7 C 1.37880 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99670 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47080 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99823 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00138 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99731 * 180.02562 * 11 10 9 14 14 O 1.45193 * 109.46743 * 180.02562 * 13 11 10 15 15 C 1.34679 * 116.99574 * 180.02562 * 14 13 11 16 16 O 1.21428 * 119.99896 * 359.97438 * 15 14 13 17 17 C 1.48056 * 119.99652 * 180.02562 * 15 14 13 18 18 C 1.39986 * 120.89950 * 359.97243 * 17 15 14 19 19 C 1.38054 * 119.13156 * 180.02562 * 18 17 15 20 20 N 1.31846 * 120.98382 * 359.72659 * 19 18 17 21 21 C 1.32234 * 121.98612 * 0.56358 * 20 19 18 22 22 N 1.39830 * 119.62194 * 179.71208 * 21 20 19 23 23 C 1.35847 * 126.10448 * 359.72588 * 22 21 20 24 24 C 1.35278 * 107.61469 * 180.02562 * 23 22 21 25 25 C 1.39963 * 107.96881 * 0.02562 * 24 23 22 26 26 N 1.30818 * 108.36940 * 0.26680 * 25 24 23 27 27 C 1.38911 * 120.75189 * 359.43986 * 21 20 19 28 28 H 0.96993 * 119.99958 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47524 * 60.00048 * 9 7 2 30 30 H 1.09000 * 109.47336 * 299.99870 * 9 7 2 31 31 H 0.96998 * 119.99808 * 359.97438 * 10 9 7 32 32 H 1.08998 * 109.47015 * 59.99506 * 13 11 10 33 33 H 1.09003 * 109.46504 * 299.99682 * 13 11 10 34 34 H 1.07998 * 120.43360 * 0.02562 * 18 17 15 35 35 H 1.08000 * 119.50989 * 179.97438 * 19 18 17 36 36 H 1.07995 * 126.19016 * 0.06570 * 23 22 21 37 37 H 1.07994 * 126.01920 * 179.97438 * 24 23 22 38 38 H 1.08002 * 125.81291 * 179.97438 * 25 24 23 39 39 H 1.07996 * 120.53121 * 180.25645 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0018 11 6 1.7540 -4.8833 -0.0015 12 8 0.5617 -5.1049 -0.0006 13 6 2.7334 -6.0287 -0.0022 14 8 2.0074 -7.2861 -0.0023 15 6 2.7410 -8.4156 -0.0023 16 8 3.9536 -8.3520 -0.0028 17 6 2.0688 -9.7348 -0.0030 18 6 0.6722 -9.8300 -0.0031 19 6 0.0837 -11.0788 -0.0032 20 7 0.8168 -12.1746 -0.0087 21 6 2.1385 -12.1332 -0.0032 22 7 2.8674 -13.3265 -0.0034 23 6 2.3480 -14.5818 -0.0034 24 6 3.3829 -15.4530 -0.0030 25 6 4.5707 -14.7126 -0.0020 26 7 4.2637 -13.4409 0.0039 27 6 2.8110 -10.9177 -0.0031 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6249 -2.5571 0.8897 31 1 3.1569 -3.4353 -0.0028 32 1 3.3607 -5.9709 0.8873 33 1 3.3594 -5.9709 -0.8927 34 1 0.0631 -8.9382 -0.0030 35 1 -0.9933 -11.1594 -0.0028 36 1 1.2989 -14.8378 -0.0044 37 1 3.3062 -16.5302 -0.0025 38 1 5.5703 -15.1215 -0.0011 39 1 3.8906 -10.8881 -0.0028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740342614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = 10.449589 kcal Electronic energy + Delta-G solvation = -25602.842060 eV Core-core repulsion = 21513.349978 eV Total energy + Delta-G solvation = -4089.492081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.01855 -41.02290 -40.02120 -38.76828 -36.58717 -34.32972 -34.24521 -33.22172 -32.46459 -30.85853 -29.88013 -29.36593 -26.95812 -25.46405 -24.48885 -22.85339 -22.35280 -21.32084 -20.82824 -20.04002 -19.08612 -17.93231 -17.60475 -16.84187 -16.80336 -16.27916 -16.09403 -15.98182 -15.55702 -15.29900 -15.02209 -14.79687 -14.61139 -14.25930 -14.03387 -13.94260 -13.23873 -13.18325 -13.11432 -12.77312 -12.44653 -12.04703 -11.86143 -11.29545 -11.14297 -11.04613 -10.97403 -10.96336 -10.85836 -10.50441 -10.38450 -10.32024 -9.64479 -9.48865 -9.28162 -8.82940 -8.77013 -8.05876 -6.23681 -4.31335 -0.05503 0.26425 1.51958 1.59383 2.08825 2.21882 2.33738 3.07813 3.20576 3.26972 3.27022 3.29175 3.66856 3.81914 4.00261 4.20209 4.30579 4.40778 4.45565 4.53953 4.69916 4.97503 5.00584 5.10785 5.13504 5.14197 5.19549 5.24280 5.28703 5.48771 5.56631 5.83405 6.02764 6.06773 6.56827 6.87437 7.15664 7.21830 7.34694 7.36130 7.40052 7.56242 7.87151 8.42492 8.64870 8.88660 9.35264 10.86379 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.039220 B = 0.001739 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.753075 B =16100.525574 C =16793.828947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.049 3.951 14 O -0.319 6.319 15 C 0.509 3.491 16 O -0.491 6.491 17 C -0.049 4.049 18 C -0.125 4.125 19 C 0.131 3.869 20 N -0.487 5.487 21 C 0.363 3.637 22 N -0.328 5.328 23 C 0.080 3.920 24 C -0.265 4.265 25 C 0.066 3.934 26 N -0.283 5.283 27 C -0.104 4.104 28 H 0.267 0.733 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.394 0.606 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.167 0.833 35 H 0.181 0.819 36 H 0.184 0.816 37 H 0.158 0.842 38 H 0.195 0.805 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.140 -28.919 -0.002 29.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.028 4.028 14 O -0.233 6.233 15 C 0.352 3.648 16 O -0.379 6.379 17 C -0.058 4.058 18 C -0.146 4.146 19 C -0.027 4.027 20 N -0.200 5.200 21 C 0.136 3.864 22 N -0.106 5.106 23 C -0.061 4.061 24 C -0.293 4.293 25 C -0.123 4.123 26 N -0.101 5.101 27 C -0.126 4.126 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.227 0.773 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.184 0.816 35 H 0.198 0.802 36 H 0.201 0.799 37 H 0.175 0.825 38 H 0.211 0.789 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.448 -28.399 0.001 28.745 hybrid contribution 1.127 0.971 -0.010 1.487 sum 5.574 -27.428 -0.009 27.989 Atomic orbital electron populations 1.69966 1.06123 1.27464 1.48584 1.24949 0.94934 0.99502 0.94543 0.86385 0.79606 0.82476 0.78274 1.20410 1.20953 1.19715 1.21203 0.93358 0.90284 1.53667 0.91735 1.19195 0.88135 0.81483 0.98082 1.46373 1.11614 1.05284 1.72222 1.19816 0.89038 0.83952 0.78877 1.90706 1.16244 1.84525 1.49685 1.22983 0.94525 0.80317 1.05017 1.86568 1.39759 1.13818 1.83190 1.20875 0.85510 0.84867 0.73549 1.90871 1.14501 1.87846 1.44668 1.19275 0.93908 0.90397 1.02248 1.22719 0.94029 1.01063 0.96785 1.22641 1.00252 0.85607 0.94199 1.66737 1.04529 1.34704 1.14070 1.17395 0.87516 0.83289 0.98187 1.45756 1.04781 1.03325 1.56711 1.22946 1.00981 0.83175 0.98993 1.21697 0.91142 1.01018 1.15461 1.24218 1.00481 0.90129 0.97479 1.77553 0.87731 1.20319 1.24512 1.21649 1.03040 0.89117 0.98825 0.92337 0.95196 0.95178 0.77349 0.88099 0.88109 0.81567 0.80234 0.79883 0.82472 0.78857 0.81904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.41 13.29 55.43 0.74 -24.67 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.55 -14.37 9.28 -34.44 -0.32 -14.69 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.39 5.43 -5.19 -0.03 6.36 16 10 N -0.70 -13.99 5.55 -61.47 -0.34 -14.33 16 11 C 0.50 9.49 7.91 -10.98 -0.09 9.41 16 12 O -0.53 -12.34 16.50 -14.10 -0.23 -12.57 16 13 C 0.05 0.69 5.95 36.01 0.21 0.91 16 14 O -0.32 -4.65 9.11 -47.11 -0.43 -5.08 16 15 C 0.51 6.81 7.92 34.76 0.28 7.08 16 16 O -0.49 -7.36 16.23 -19.21 -0.31 -7.67 16 17 C -0.05 -0.55 5.91 -104.69 -0.62 -1.17 16 18 C -0.13 -1.14 9.70 -38.99 -0.38 -1.52 16 19 C 0.13 1.01 11.17 -17.61 -0.20 0.82 16 20 N -0.49 -4.70 9.83 -12.34 -0.12 -4.82 16 21 C 0.36 3.98 7.55 -154.43 -1.17 2.82 16 22 N -0.33 -3.49 3.81 -12.13 -0.05 -3.54 16 23 C 0.08 0.65 11.10 -16.83 -0.19 0.47 16 24 C -0.26 -1.76 10.80 -39.99 -0.43 -2.19 16 25 C 0.07 0.49 12.02 -17.34 -0.21 0.29 16 26 N -0.28 -3.05 11.83 30.64 0.36 -2.69 16 27 C -0.10 -1.18 9.27 -38.81 -0.36 -1.54 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.39 6.53 8.32 -40.82 -0.34 6.19 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.17 1.42 7.71 -52.49 -0.40 1.02 16 35 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.18 1.09 8.05 -52.49 -0.42 0.67 16 37 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.16 1.96 7.37 -52.49 -0.39 1.57 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -34.85 360.54 -7.60 -42.46 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.05 Total: 3.43 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -3.59 Total: 8.69 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.59 Total: -50.05 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.97 Total: -25.33 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.85 -7.60 -42.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740342614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.906 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds