Wall clock time and date at job start Tue Mar 31 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48507 * 109.47058 * 270.00525 * 3 2 1 5 5 H 1.48500 * 109.47007 * 30.00031 * 3 2 1 6 6 H 1.48493 * 109.47577 * 150.00405 * 3 2 1 7 7 C 1.37880 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99670 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47080 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99823 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00138 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99731 * 180.02562 * 11 10 9 14 14 O 1.45193 * 109.46743 * 180.02562 * 13 11 10 15 15 C 1.34679 * 116.99574 * 180.02562 * 14 13 11 16 16 O 1.21428 * 119.99896 * 359.97438 * 15 14 13 17 17 C 1.48056 * 119.99652 * 180.02562 * 15 14 13 18 18 C 1.39986 * 120.89950 * 359.97243 * 17 15 14 19 19 C 1.38054 * 119.13156 * 180.02562 * 18 17 15 20 20 N 1.31846 * 120.98382 * 359.72659 * 19 18 17 21 21 C 1.32234 * 121.98612 * 0.56358 * 20 19 18 22 22 N 1.39830 * 119.62194 * 179.71208 * 21 20 19 23 23 C 1.35847 * 126.10448 * 359.72588 * 22 21 20 24 24 C 1.35278 * 107.61469 * 180.02562 * 23 22 21 25 25 C 1.39963 * 107.96881 * 0.02562 * 24 23 22 26 26 N 1.30818 * 108.36940 * 0.26680 * 25 24 23 27 27 C 1.38911 * 120.75189 * 359.43986 * 21 20 19 28 28 H 0.96993 * 119.99958 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47524 * 60.00048 * 9 7 2 30 30 H 1.09000 * 109.47336 * 299.99870 * 9 7 2 31 31 H 0.96998 * 119.99808 * 359.97438 * 10 9 7 32 32 H 1.08998 * 109.47015 * 59.99506 * 13 11 10 33 33 H 1.09003 * 109.46504 * 299.99682 * 13 11 10 34 34 H 1.07998 * 120.43360 * 0.02562 * 18 17 15 35 35 H 1.08000 * 119.50989 * 179.97438 * 19 18 17 36 36 H 1.07995 * 126.19016 * 0.06570 * 23 22 21 37 37 H 1.07994 * 126.01920 * 179.97438 * 24 23 22 38 38 H 1.08002 * 125.81291 * 179.97438 * 25 24 23 39 39 H 1.07996 * 120.53121 * 180.25645 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0018 11 6 1.7540 -4.8833 -0.0015 12 8 0.5617 -5.1049 -0.0006 13 6 2.7334 -6.0287 -0.0022 14 8 2.0074 -7.2861 -0.0023 15 6 2.7410 -8.4156 -0.0023 16 8 3.9536 -8.3520 -0.0028 17 6 2.0688 -9.7348 -0.0030 18 6 0.6722 -9.8300 -0.0031 19 6 0.0837 -11.0788 -0.0032 20 7 0.8168 -12.1746 -0.0087 21 6 2.1385 -12.1332 -0.0032 22 7 2.8674 -13.3265 -0.0034 23 6 2.3480 -14.5818 -0.0034 24 6 3.3829 -15.4530 -0.0030 25 6 4.5707 -14.7126 -0.0020 26 7 4.2637 -13.4409 0.0039 27 6 2.8110 -10.9177 -0.0031 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6249 -2.5571 0.8897 31 1 3.1569 -3.4353 -0.0028 32 1 3.3607 -5.9709 0.8873 33 1 3.3594 -5.9709 -0.8927 34 1 0.0631 -8.9382 -0.0030 35 1 -0.9933 -11.1594 -0.0028 36 1 1.2989 -14.8378 -0.0044 37 1 3.3062 -16.5302 -0.0025 38 1 5.5703 -15.1215 -0.0011 39 1 3.8906 -10.8881 -0.0028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740342614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:04 Heat of formation + Delta-G solvation = -12.278371 kcal Electronic energy + Delta-G solvation = -25603.827618 eV Core-core repulsion = 21513.349978 eV Total energy + Delta-G solvation = -4090.477640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.68822 -41.99098 -40.94540 -40.28235 -37.75706 -36.19089 -34.96929 -34.42163 -33.98660 -31.51641 -30.87563 -30.49502 -28.67667 -26.45353 -25.21335 -24.58403 -23.30726 -21.98735 -21.67124 -21.61076 -19.94892 -19.18742 -18.82035 -17.99422 -17.98021 -17.47744 -17.11267 -16.85368 -16.75078 -16.70798 -16.23546 -16.12973 -15.67961 -15.21645 -14.87998 -14.73880 -14.47860 -14.46144 -14.15376 -13.91122 -13.71459 -13.70303 -13.28072 -12.94426 -12.72389 -12.23577 -12.22307 -12.04168 -11.88974 -11.67410 -11.50120 -11.29649 -11.08926 -10.93082 -10.81886 -10.28343 -9.93504 -9.42171 -8.29857 -6.46150 -0.87055 -0.47452 0.84097 0.84948 1.09895 1.28681 1.44757 1.45972 1.53575 1.57386 1.81296 2.29050 2.47265 2.51069 3.05659 3.10199 3.24994 3.29555 3.60651 3.64399 3.79219 3.94911 4.00967 4.02497 4.06453 4.35521 4.45743 4.58063 4.70916 4.80366 4.93528 5.02831 5.09086 5.18223 5.22479 5.41056 5.55423 5.62000 5.82107 5.94304 6.23359 6.28460 6.62621 6.68147 6.76045 7.19812 7.34335 8.82043 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.039220 B = 0.001739 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.753075 B =16100.525574 C =16793.828947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.257 1.257 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.502 3.498 12 O -0.580 6.580 13 C 0.059 3.941 14 O -0.331 6.331 15 C 0.516 3.484 16 O -0.511 6.511 17 C -0.060 4.060 18 C -0.122 4.122 19 C 0.144 3.856 20 N -0.489 5.489 21 C 0.356 3.644 22 N -0.345 5.345 23 C 0.065 3.935 24 C -0.256 4.256 25 C 0.069 3.931 26 N -0.329 5.329 27 C -0.117 4.117 28 H 0.269 0.731 29 H -0.006 1.006 30 H -0.006 1.006 31 H 0.413 0.587 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.173 0.827 35 H 0.221 0.779 36 H 0.201 0.799 37 H 0.189 0.811 38 H 0.227 0.773 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 -30.206 0.003 30.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.596 4.596 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.287 3.713 12 O -0.460 6.460 13 C -0.017 4.017 14 O -0.246 6.246 15 C 0.360 3.640 16 O -0.399 6.399 17 C -0.069 4.069 18 C -0.143 4.143 19 C -0.013 4.013 20 N -0.203 5.203 21 C 0.129 3.871 22 N -0.124 5.124 23 C -0.075 4.075 24 C -0.284 4.284 25 C -0.120 4.120 26 N -0.147 5.147 27 C -0.139 4.139 28 H 0.078 0.922 29 H 0.012 0.988 30 H 0.012 0.988 31 H 0.249 0.751 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.190 0.810 35 H 0.237 0.763 36 H 0.218 0.782 37 H 0.206 0.794 38 H 0.243 0.757 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.738 -29.733 0.005 30.282 hybrid contribution 0.699 1.209 -0.012 1.397 sum 6.436 -28.524 -0.007 29.241 Atomic orbital electron populations 1.70120 1.08170 1.28601 1.49812 1.26015 0.95755 1.03755 0.93851 0.85175 0.78488 0.77126 0.78538 1.19699 1.21038 1.18032 1.21619 0.94439 0.90478 1.53075 0.89654 1.18640 0.88540 0.83666 0.94745 1.46039 1.11777 1.04705 1.72456 1.20557 0.89224 0.84584 0.76916 1.90684 1.18680 1.85233 1.51395 1.22869 0.92753 0.78484 1.07627 1.86553 1.40356 1.14174 1.83478 1.21141 0.85279 0.84962 0.72654 1.90855 1.15281 1.88017 1.45793 1.19218 0.94838 0.89187 1.03706 1.22856 0.93036 1.02054 0.96356 1.23309 1.01795 0.84481 0.91752 1.66884 1.03914 1.35258 1.14219 1.17551 0.88037 0.83490 0.98032 1.45893 1.04904 1.03793 1.57802 1.23447 1.02320 0.82633 0.99082 1.22126 0.90193 1.02335 1.13730 1.24902 1.02294 0.89351 0.95423 1.77529 0.88311 1.22305 1.26580 1.21507 1.02423 0.89630 1.00360 0.92212 0.98793 0.98766 0.75117 0.85402 0.85410 0.80957 0.76282 0.78230 0.79375 0.75721 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.61 13.29 21.45 0.28 -54.33 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.98 41.37 29.54 68.60 2.03 43.39 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.56 -29.34 9.28 25.60 0.24 -29.11 16 8 H 0.09 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.27 14.01 5.43 85.63 0.46 14.47 16 10 N -0.70 -27.73 5.55 -466.78 -2.59 -30.32 16 11 C 0.50 19.05 7.91 87.66 0.69 19.75 16 12 O -0.58 -27.53 16.50 15.79 0.26 -27.27 16 13 C 0.06 1.60 5.95 71.24 0.42 2.03 16 14 O -0.33 -9.46 9.11 -49.50 -0.45 -9.91 16 15 C 0.52 13.67 7.92 70.43 0.56 14.23 16 16 O -0.51 -15.18 16.23 20.07 0.33 -14.85 16 17 C -0.06 -1.36 5.91 -19.91 -0.12 -1.48 16 18 C -0.12 -2.12 9.70 22.65 0.22 -1.90 16 19 C 0.14 1.97 11.17 84.65 0.95 2.92 16 20 N -0.49 -8.84 9.83 -192.95 -1.90 -10.74 16 21 C 0.36 7.77 7.55 132.77 1.00 8.77 16 22 N -0.35 -7.28 3.81 -192.28 -0.73 -8.01 16 23 C 0.06 0.97 11.10 83.39 0.93 1.90 16 24 C -0.26 -2.86 10.80 22.00 0.24 -2.62 16 25 C 0.07 0.93 12.02 85.26 1.02 1.96 16 26 N -0.33 -7.08 11.83 -56.97 -0.67 -7.76 16 27 C -0.12 -2.73 9.27 22.77 0.21 -2.52 16 28 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 29 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 30 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.41 13.14 8.32 -92.71 -0.77 12.37 16 32 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.17 2.78 7.71 -2.91 -0.02 2.76 16 35 H 0.22 1.12 8.06 -2.91 -0.02 1.10 16 36 H 0.20 2.06 8.05 -2.91 -0.02 2.03 16 37 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.23 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.15 3.83 7.37 -2.91 -0.02 3.81 16 Total: -1.00 -78.74 360.54 4.18 -74.56 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.34 Total: 16.03 kcal Atomic # 6 Polarization: 21.90 SS G_CDS: 7.29 Total: 29.19 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -5.61 Total: -111.15 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: 0.14 Total: -52.03 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -78.74 4.18 -74.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740342614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.282 kcal (2) G-P(sol) polarization free energy of solvation -78.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds