Wall clock time and date at job start Tue Mar 31 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00206 * 2 1 4 4 H 1.48497 * 109.47132 * 240.00216 * 3 2 1 5 5 H 1.48502 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47516 * 119.99974 * 3 2 1 7 7 C 1.37875 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00138 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.47016 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99772 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99860 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.99872 * 180.02562 * 11 10 9 14 14 O 1.45201 * 109.47155 * 180.02562 * 13 11 10 15 15 C 1.34738 * 116.99855 * 180.02562 * 14 13 11 16 16 O 1.21490 * 120.00249 * 359.97438 * 15 14 13 17 17 C 1.47558 * 119.99653 * 179.97438 * 15 14 13 18 18 C 1.39752 * 120.08003 * 179.97438 * 17 15 14 19 19 C 1.37726 * 119.91041 * 179.70134 * 18 17 15 20 20 C 1.39034 * 120.08739 * 0.27764 * 19 18 17 21 21 N 1.39916 * 119.91944 * 180.02562 * 20 19 18 22 22 C 1.36313 * 126.86949 * 180.02562 * 21 20 19 23 23 C 1.34963 * 106.78061 * 179.97438 * 22 21 20 24 24 N 1.33380 * 109.01662 * 359.97438 * 23 22 21 25 25 N 1.28769 * 109.92470 * 359.75089 * 24 23 22 26 26 C 1.39047 * 120.17069 * 0.02562 * 20 19 18 27 27 C 1.37722 * 120.07943 * 359.97438 * 26 20 19 28 28 H 0.96999 * 119.99865 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47501 * 59.99629 * 9 7 2 30 30 H 1.09000 * 109.46969 * 299.99530 * 9 7 2 31 31 H 0.97000 * 119.99937 * 0.02562 * 10 9 7 32 32 H 1.08999 * 109.46981 * 60.00059 * 13 11 10 33 33 H 1.09006 * 109.47301 * 300.00598 * 13 11 10 34 34 H 1.08002 * 120.04795 * 359.97438 * 18 17 15 35 35 H 1.08000 * 119.95650 * 180.30823 * 19 18 17 36 36 H 1.07995 * 126.61154 * 359.93557 * 22 21 20 37 37 H 1.08001 * 125.49327 * 179.97438 * 23 22 21 38 38 H 1.07996 * 119.95727 * 179.97438 * 26 20 19 39 39 H 1.08005 * 120.03999 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6128 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7329 -6.0289 0.0016 14 8 2.0069 -7.2863 0.0015 15 6 2.7407 -8.4163 0.0025 16 8 3.9540 -8.3528 0.0030 17 6 2.0708 -9.7310 0.0031 18 6 2.8302 -10.9042 0.0036 19 6 2.2013 -12.1294 0.0103 20 6 0.8127 -12.2002 0.0107 21 7 0.1775 -13.4468 0.0181 22 6 -1.1655 -13.6803 0.0190 23 6 -1.3280 -15.0201 0.0265 24 7 -0.1285 -15.6034 0.0296 25 7 0.7955 -14.7066 0.0192 26 6 0.0537 -11.0352 0.0038 27 6 0.6754 -9.8063 -0.0029 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 3.1567 -3.4355 0.0009 32 1 3.3595 -5.9707 0.8916 33 1 3.3598 -5.9715 -0.8883 34 1 3.9089 -10.8501 0.0032 35 1 2.7875 -13.0365 0.0157 36 1 -1.9486 -12.9366 0.0151 37 1 -2.2764 -15.5367 0.0295 38 1 -1.0247 -11.0941 0.0038 39 1 0.0852 -8.9018 -0.0078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760691007.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:13 Heat of formation + Delta-G solvation = 12.342790 kcal Electronic energy + Delta-G solvation = -25459.172868 eV Core-core repulsion = 21369.762882 eV Total energy + Delta-G solvation = -4089.409986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.73008 -40.91201 -39.54974 -38.69007 -36.51104 -35.02662 -34.31914 -32.47091 -32.10986 -31.19724 -30.66933 -29.16167 -26.84439 -25.46610 -24.01738 -23.05515 -22.45042 -21.71090 -21.11244 -20.02972 -19.17297 -18.39748 -17.60560 -16.77983 -16.76064 -16.38047 -15.85106 -15.74098 -15.60263 -15.21903 -14.83433 -14.77271 -14.77128 -14.29009 -14.15559 -13.68425 -13.51643 -13.03942 -13.01442 -12.65718 -12.40724 -12.04176 -11.86292 -11.77344 -11.62313 -11.61279 -11.07871 -10.95443 -10.88909 -10.82151 -10.38897 -9.98564 -9.74392 -9.50676 -9.27274 -9.09154 -8.82782 -8.05837 -6.23985 -4.31729 -0.35707 0.67456 0.99893 1.52554 2.01150 2.18412 2.20158 3.08256 3.18423 3.21238 3.26431 3.27609 3.76079 3.83331 3.90325 4.17599 4.26173 4.30809 4.44025 4.52858 4.57206 4.67673 4.88124 4.97324 5.01169 5.11761 5.14528 5.25329 5.35861 5.40632 5.49814 5.64866 5.78033 5.87422 6.12429 6.25692 7.15752 7.22632 7.39733 7.44548 7.56327 7.56615 7.86927 8.42677 8.64727 8.88791 9.34830 10.86030 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.033619 B = 0.001699 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.672548 B =16472.446587 C =17284.646203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.535 6.535 13 C 0.050 3.950 14 O -0.324 6.324 15 C 0.508 3.492 16 O -0.503 6.503 17 C -0.120 4.120 18 C -0.030 4.030 19 C -0.122 4.122 20 C 0.171 3.829 21 N -0.323 5.323 22 C 0.027 3.973 23 C -0.071 4.071 24 N -0.229 5.229 25 N -0.060 5.060 26 C -0.140 4.140 27 C -0.031 4.031 28 H 0.267 0.733 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.393 0.607 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.200 0.800 37 H 0.193 0.807 38 H 0.144 0.856 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -25.599 0.008 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.283 3.717 12 O -0.413 6.413 13 C -0.028 4.028 14 O -0.238 6.238 15 C 0.353 3.647 16 O -0.392 6.392 17 C -0.122 4.122 18 C -0.049 4.049 19 C -0.142 4.142 20 C 0.078 3.922 21 N -0.105 5.105 22 C -0.123 4.123 23 C -0.225 4.225 24 N -0.099 5.099 25 N -0.038 5.038 26 C -0.161 4.161 27 C -0.050 4.050 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.226 0.774 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.216 0.784 37 H 0.210 0.790 38 H 0.161 0.839 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.111 -26.363 0.011 26.386 hybrid contribution -0.001 1.755 -0.002 1.755 sum 1.109 -24.608 0.010 24.633 Atomic orbital electron populations 1.69960 1.06123 1.27571 1.48513 1.24946 0.94939 0.99497 0.94540 0.86440 0.79397 0.82137 0.78742 1.20027 1.21027 1.20020 1.21170 0.93319 0.90304 1.53767 0.91790 1.19184 0.88138 0.81492 0.98049 1.46374 1.11589 1.05326 1.72247 1.19850 0.89071 0.83977 0.78807 1.90703 1.16287 1.84561 1.49732 1.22926 0.94444 0.80539 1.04865 1.86583 1.39911 1.13914 1.83414 1.21016 0.85603 0.84998 0.73129 1.90858 1.14646 1.87977 1.45737 1.19248 0.93976 0.90545 1.08394 1.21206 1.01347 0.89459 0.92902 1.20860 0.91708 0.99274 1.02383 1.17864 0.92600 0.81085 1.00630 1.48062 1.05699 1.06904 1.49787 1.23677 0.86273 0.99553 1.02761 1.23327 0.97863 0.91019 1.10337 1.74376 0.99379 1.25154 1.10977 1.82163 1.16999 0.82420 1.22184 1.20897 1.00696 0.90133 1.04393 1.21513 0.93388 0.98302 0.91816 0.92288 0.95222 0.95213 0.77367 0.88246 0.88251 0.82974 0.83215 0.78364 0.79021 0.83867 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.29 13.29 55.43 0.74 -24.56 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.55 -14.30 9.28 -34.44 -0.32 -14.62 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.36 5.43 -5.19 -0.03 6.33 16 10 N -0.71 -13.87 5.55 -61.47 -0.34 -14.22 16 11 C 0.50 9.38 7.91 -10.99 -0.09 9.30 16 12 O -0.54 -12.26 16.50 -14.11 -0.23 -12.49 16 13 C 0.05 0.69 5.95 36.00 0.21 0.91 16 14 O -0.32 -4.58 9.00 -47.28 -0.43 -5.01 16 15 C 0.51 6.34 7.89 34.53 0.27 6.61 16 16 O -0.50 -7.03 16.13 -19.26 -0.31 -7.35 16 17 C -0.12 -1.17 5.87 -104.97 -0.62 -1.79 16 18 C -0.03 -0.25 9.59 -39.20 -0.38 -0.63 16 19 C -0.12 -0.96 9.66 -39.47 -0.38 -1.34 16 20 C 0.17 1.34 6.70 -83.57 -0.56 0.78 16 21 N -0.32 -2.68 3.85 -10.50 -0.04 -2.72 16 22 C 0.03 0.15 10.92 -16.72 -0.18 -0.03 16 23 C -0.07 -0.46 11.86 -18.04 -0.21 -0.67 16 24 N -0.23 -2.31 12.33 30.09 0.37 -1.94 16 25 N -0.06 -0.63 13.15 60.35 0.79 0.16 16 26 C -0.14 -0.93 9.46 -39.47 -0.37 -1.30 16 27 C -0.03 -0.26 9.61 -39.21 -0.38 -0.64 16 28 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.39 6.46 8.32 -40.82 -0.34 6.12 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.15 1.13 7.64 -52.49 -0.40 0.73 16 35 H 0.15 1.07 7.72 -52.49 -0.41 0.67 16 36 H 0.20 0.26 7.16 -52.49 -0.38 -0.11 16 37 H 0.19 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.14 0.53 6.82 -52.49 -0.36 0.17 16 39 H 0.16 1.33 7.60 -52.48 -0.40 0.93 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -35.02 358.02 -6.13 -41.14 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.93 Total: 1.77 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -3.13 Total: 4.57 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 1.52 Total: -43.28 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.97 Total: -24.84 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.02 -6.13 -41.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760691007.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.487 kcal (2) G-P(sol) polarization free energy of solvation -35.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds