Wall clock time and date at job start Tue Mar 31 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86799 * 119.99619 * 2 1 4 4 H 1.48506 * 109.47057 * 272.42437 * 3 2 1 5 5 H 1.48498 * 109.47411 * 32.42859 * 3 2 1 6 6 H 1.48500 * 109.47065 * 152.42642 * 3 2 1 7 7 C 1.40026 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99732 * 347.74557 * 7 2 1 9 9 C 1.41539 * 120.00297 * 167.74304 * 7 2 1 10 10 C 1.41176 * 120.99733 * 149.40565 * 9 7 2 11 11 C 1.37592 * 119.01348 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.10897 * 359.72933 * 11 10 9 13 13 C 1.32473 * 122.23182 * 0.56503 * 12 11 10 14 14 N 1.39465 * 119.57654 * 179.70990 * 13 12 11 15 15 C 1.34776 * 120.00360 * 4.93469 * 14 13 12 16 16 O 1.21276 * 119.99868 * 355.11879 * 15 14 13 17 17 C 1.50697 * 119.99957 * 175.12345 * 15 14 13 18 18 C 1.53006 * 109.47147 * 179.97438 * 17 15 14 19 19 N 1.46501 * 109.47122 * 179.97438 * 18 17 15 20 20 C 1.37905 * 120.06089 * 270.27090 * 19 18 17 21 21 C 1.32994 * 121.64709 * 180.29544 * 20 19 18 22 22 N 1.37894 * 121.65732 * 359.71788 * 21 20 19 23 23 H 0.96998 * 120.05922 * 180.02562 * 22 21 20 24 24 C 1.35065 * 119.87325 * 0.02562 * 22 21 20 25 25 O 1.21587 * 120.76131 * 179.97438 * 24 22 21 26 26 C 1.35059 * 120.06622 * 90.00221 * 19 18 17 27 27 O 1.21589 * 120.76003 * 359.97438 * 26 19 18 28 28 C 1.38595 * 120.83825 * 359.43217 * 13 12 11 29 29 H 0.97004 * 120.00242 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.49482 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.43978 * 179.97438 * 11 10 9 32 32 H 0.97002 * 119.99934 * 184.94012 * 14 13 12 33 33 H 1.09000 * 109.47581 * 60.00153 * 17 15 14 34 34 H 1.08996 * 109.47556 * 299.99807 * 17 15 14 35 35 H 1.09004 * 109.46690 * 60.00229 * 18 17 15 36 36 H 1.08999 * 109.46980 * 299.99875 * 18 17 15 37 37 H 1.07995 * 119.17162 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.16831 * 179.74321 * 21 20 19 39 39 H 1.07995 * 120.59888 * 180.29703 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4374 2.0761 -1.3989 5 1 1.4653 2.6373 0.7508 6 1 3.5636 1.4260 0.6481 7 6 2.0076 -1.2126 -0.0005 8 1 1.4860 -2.1374 0.1976 9 6 3.3988 -1.2265 -0.2608 10 6 4.2369 -2.2043 0.3176 11 6 5.5837 -2.1792 0.0372 12 7 6.0971 -1.2629 -0.7637 13 6 5.3552 -0.3208 -1.3267 14 7 5.9562 0.6233 -2.1588 15 6 7.2642 0.5157 -2.4656 16 8 7.9391 -0.3493 -1.9488 17 6 7.8880 1.4704 -3.4507 18 6 9.3711 1.1333 -3.6184 19 7 9.9774 2.0610 -4.5765 20 6 9.9881 1.7560 -5.9213 21 6 10.5350 2.5722 -6.8177 22 7 11.1142 3.7681 -6.4491 23 1 11.5061 4.3460 -7.1224 24 6 11.1349 4.1330 -5.1489 25 8 11.6418 5.1836 -4.8058 26 6 10.5221 3.2191 -4.1451 27 8 10.5168 3.5068 -2.9637 28 6 3.9884 -0.2650 -1.1038 29 1 -0.4851 0.8401 0.0004 30 1 3.8271 -2.9607 0.9704 31 1 6.2313 -2.9237 0.4762 32 1 5.4329 1.3574 -2.5168 33 1 7.7873 2.4909 -3.0814 34 1 7.3837 1.3807 -4.4128 35 1 9.4722 0.1127 -3.9876 36 1 9.8751 1.2233 -2.6561 37 1 9.5451 0.8291 -6.2544 38 1 10.5247 2.2915 -7.8605 39 1 3.3865 0.5018 -1.5686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763910375.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:51 Heat of formation + Delta-G solvation = -33.497802 kcal Electronic energy + Delta-G solvation = -26684.879730 eV Core-core repulsion = 22593.481947 eV Total energy + Delta-G solvation = -4091.397783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.97319 -39.99643 -38.98297 -38.16256 -38.00350 -35.46097 -34.50164 -33.84787 -32.07981 -31.35112 -30.01738 -28.98881 -26.59702 -26.01937 -23.90506 -23.54623 -22.45684 -21.39769 -19.84802 -19.38372 -19.05107 -17.93795 -17.77498 -17.28452 -16.60094 -16.50057 -15.79478 -15.65278 -15.53459 -15.22777 -14.69690 -14.55074 -14.28541 -14.09043 -13.87322 -13.76617 -13.41835 -13.16636 -13.00654 -12.98131 -12.52532 -12.40201 -11.88172 -11.67086 -11.42313 -11.03326 -10.90659 -10.85727 -10.72481 -10.22534 -10.11648 -9.95104 -9.69406 -9.40957 -8.29027 -8.14967 -7.95564 -7.34239 -7.09174 -4.79173 0.85511 1.23171 1.91898 2.18385 2.43725 2.56205 2.92472 2.94811 3.02770 3.17655 3.23691 3.35522 3.64269 3.83790 4.39770 4.51380 4.54003 4.60684 4.66347 4.85668 5.07717 5.18536 5.32503 5.36696 5.56824 5.69004 5.70158 6.10398 6.18595 6.22310 6.28020 6.34040 6.49475 6.73113 6.89931 6.94658 7.04445 7.16396 7.47138 7.48593 7.65005 7.94338 8.15125 8.34567 8.53603 8.60271 9.36019 9.92312 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.002518 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.247617 B =11118.126217 C =11774.851071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.084 3.916 3 Si 0.917 3.083 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.245 1.245 7 C -0.437 4.437 8 H 0.096 0.904 9 C 0.127 3.873 10 C -0.269 4.269 11 C 0.128 3.872 12 N -0.554 5.554 13 C 0.367 3.633 14 N -0.662 5.662 15 C 0.506 3.494 16 O -0.475 6.475 17 C -0.159 4.159 18 C 0.118 3.882 19 N -0.517 5.517 20 C 0.023 3.977 21 C 0.006 3.994 22 N -0.626 5.626 23 H 0.418 0.582 24 C 0.498 3.502 25 O -0.485 6.485 26 C 0.491 3.509 27 O -0.472 6.472 28 C -0.318 4.318 29 H 0.288 0.712 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.408 0.592 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.038 5.117 -17.006 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.168 1.168 7 C -0.467 4.467 8 H 0.114 0.886 9 C 0.119 3.881 10 C -0.292 4.292 11 C -0.024 4.024 12 N -0.274 5.274 13 C 0.140 3.860 14 N -0.308 5.308 15 C 0.290 3.710 16 O -0.345 6.345 17 C -0.200 4.200 18 C -0.003 4.003 19 N -0.242 5.242 20 C -0.097 4.097 21 C -0.115 4.115 22 N -0.274 5.274 23 H 0.257 0.743 24 C 0.281 3.719 25 O -0.355 6.355 26 C 0.275 3.725 27 O -0.342 6.342 28 C -0.344 4.344 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.148 0.852 32 H 0.243 0.757 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.192 0.808 38 H 0.192 0.808 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.472 5.280 -15.670 23.340 hybrid contribution -1.126 1.341 -0.540 1.833 sum 15.345 6.622 -16.210 23.283 Atomic orbital electron populations 1.69605 1.08040 1.30540 1.34525 1.26183 0.94841 1.01810 0.90761 0.86235 0.81049 0.79429 0.78848 1.19733 1.21798 1.16792 1.19509 0.90798 0.95792 1.40605 0.88619 1.17710 0.93469 0.89497 0.87462 1.21938 0.94169 1.05372 1.07755 1.21918 0.92843 0.94518 0.93159 1.67314 1.38078 1.06499 1.15473 1.17994 0.88172 0.89201 0.90663 1.43513 1.10553 1.28238 1.48526 1.20317 0.82080 0.85602 0.82971 1.90814 1.60066 1.33663 1.49980 1.22016 0.96373 1.01054 1.00555 1.21622 0.91956 0.92383 0.94327 1.45701 1.51964 1.19115 1.07455 1.21184 1.04946 1.02002 0.81518 1.21018 1.02911 0.87248 1.00310 1.43549 1.54394 1.20713 1.08762 0.74345 1.20382 0.81400 0.87319 0.82816 1.90934 1.42847 1.22630 1.79100 1.20334 0.80657 0.81939 0.89589 1.90934 1.54979 1.72524 1.15721 1.21250 0.92930 1.08709 1.11508 0.90149 0.87097 0.85160 0.75671 0.88435 0.88217 0.87673 0.87575 0.80850 0.80803 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.42 13.92 55.55 0.77 -19.65 16 2 C 0.08 2.11 5.48 -17.35 -0.10 2.01 16 3 Si 0.92 19.89 24.42 -169.99 -4.15 15.74 16 4 H -0.27 -5.46 6.67 56.52 0.38 -5.08 16 5 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.24 -5.59 6.65 56.52 0.38 -5.21 16 7 C -0.44 -11.29 9.67 -37.65 -0.36 -11.66 16 8 H 0.10 2.58 8.06 -52.48 -0.42 2.16 16 9 C 0.13 3.12 5.16 -106.55 -0.55 2.57 16 10 C -0.27 -6.12 9.90 -38.70 -0.38 -6.50 16 11 C 0.13 2.80 11.15 -17.68 -0.20 2.60 16 12 N -0.55 -12.92 7.85 -12.52 -0.10 -13.02 16 13 C 0.37 8.08 7.42 -154.71 -1.15 6.94 16 14 N -0.66 -11.44 5.39 -11.49 -0.06 -11.51 16 15 C 0.51 8.04 7.79 -10.99 -0.09 7.95 16 16 O -0.48 -9.38 14.24 5.56 0.08 -9.30 16 17 C -0.16 -1.64 6.03 -27.88 -0.17 -1.80 16 18 C 0.12 1.16 4.70 -4.04 -0.02 1.15 16 19 N -0.52 -4.37 2.65 -116.81 -0.31 -4.68 16 20 C 0.02 0.10 10.25 -16.64 -0.17 -0.07 16 21 C 0.01 0.02 11.10 -16.64 -0.18 -0.17 16 22 N -0.63 -3.38 5.38 -12.59 -0.07 -3.44 16 23 H 0.42 1.24 8.93 -40.82 -0.36 0.88 16 24 C 0.50 5.29 8.03 -11.70 -0.09 5.19 16 25 O -0.49 -7.01 17.85 -10.30 -0.18 -7.20 16 26 C 0.49 5.83 7.73 -11.70 -0.09 5.74 16 27 O -0.47 -7.60 16.67 -10.31 -0.17 -7.77 16 28 C -0.32 -7.35 6.94 -38.48 -0.27 -7.62 16 29 H 0.29 6.61 8.29 -40.82 -0.34 6.27 16 30 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.13 2.45 8.06 -52.49 -0.42 2.03 16 32 H 0.41 5.64 8.70 -40.82 -0.36 5.29 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.11 0.88 8.00 -51.93 -0.42 0.46 16 36 H 0.11 1.33 7.42 -51.93 -0.39 0.94 16 37 H 0.17 0.23 8.06 -52.49 -0.42 -0.19 16 38 H 0.17 -0.19 8.06 -52.49 -0.42 -0.61 16 39 H 0.11 2.38 4.43 -52.49 -0.23 2.15 16 LS Contribution 342.49 15.07 5.16 5.16 Total: -1.00 -36.45 342.49 -6.74 -43.20 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.90 Total: 6.14 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -3.82 Total: 6.33 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.24 Total: -52.30 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.28 Total: -24.27 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.15 Total: 15.74 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.45 -6.74 -43.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763910375.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.697 kcal (2) G-P(sol) polarization free energy of solvation -36.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds