Wall clock time and date at job start Tue Mar 31 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99553 * 2 1 4 4 H 1.48495 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46996 * 299.99661 * 3 2 1 6 6 H 1.48493 * 109.47025 * 59.99691 * 3 2 1 7 7 C 1.37875 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99978 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46968 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99856 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00206 * 359.97438 * 11 10 9 13 13 C 1.50706 * 120.00173 * 179.97438 * 11 10 9 14 14 O 1.45194 * 109.47179 * 179.97438 * 13 11 10 15 15 C 1.34728 * 116.99769 * 179.97438 * 14 13 11 16 16 O 1.21480 * 120.00054 * 0.02562 * 15 14 13 17 17 C 1.47714 * 119.99852 * 180.02562 * 15 14 13 18 18 N 1.34607 * 126.02945 * 359.96954 * 17 15 14 19 19 C 1.30851 * 107.29094 * 180.02562 * 18 17 15 20 20 N 1.34905 * 107.59950 * 0.02562 * 19 18 17 21 21 C 1.40143 * 125.76323 * 179.97438 * 20 19 18 22 22 C 1.38853 * 120.06452 * 179.97438 * 21 20 19 23 23 C 1.38111 * 119.93168 * 180.02562 * 22 21 20 24 24 C 1.38285 * 120.06839 * 359.97438 * 23 22 21 25 25 C 1.38281 * 120.13633 * 0.02562 * 24 23 22 26 26 C 1.38122 * 120.06846 * 0.02562 * 25 24 23 27 27 N 1.28848 * 108.46838 * 0.25756 * 20 19 18 28 28 H 0.97003 * 120.00731 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.47289 * 59.99793 * 9 7 2 30 30 H 1.08999 * 109.46726 * 299.99695 * 9 7 2 31 31 H 0.97000 * 120.00419 * 359.97438 * 10 9 7 32 32 H 1.09004 * 109.46806 * 59.99540 * 13 11 10 33 33 H 1.08995 * 109.47171 * 300.00340 * 13 11 10 34 34 H 1.07999 * 126.19948 * 179.97438 * 19 18 17 35 35 H 1.08001 * 120.03616 * 0.02562 * 22 21 20 36 36 H 1.08000 * 119.96912 * 180.02562 * 23 22 21 37 37 H 1.07994 * 119.93477 * 179.74935 * 24 23 22 38 38 H 1.07996 * 119.97103 * 179.97438 * 25 24 23 39 39 H 1.07997 * 120.03741 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6125 0.0018 11 6 1.7540 -4.8833 0.0015 12 8 0.5616 -5.1050 0.0006 13 6 2.7334 -6.0287 0.0022 14 8 2.0074 -7.2862 0.0023 15 6 2.7413 -8.4160 0.0023 16 8 3.9544 -8.3524 0.0028 17 6 2.0708 -9.7322 0.0019 18 7 0.7414 -9.9435 0.0020 19 6 0.5534 -11.2385 0.0020 20 7 1.7674 -11.8269 0.0025 21 6 2.0085 -13.2074 0.0033 22 6 3.3119 -13.6859 0.0032 23 6 3.5463 -15.0470 0.0034 24 6 2.4845 -15.9329 0.0042 25 6 1.1853 -15.4595 0.0042 26 6 0.9444 -14.0994 0.0030 27 7 2.6677 -10.9051 0.0083 28 1 -0.4851 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 3.1569 -3.4353 0.0021 32 1 3.3595 -5.9709 0.8926 33 1 3.3607 -5.9710 -0.8873 34 1 -0.4007 -11.7445 0.0025 35 1 4.1416 -12.9946 0.0030 36 1 4.5599 -15.4199 0.0038 37 1 2.6703 -16.9968 0.0002 38 1 0.3581 -16.1537 0.0044 39 1 -0.0705 -13.7302 0.0035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768683964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:42 Heat of formation + Delta-G solvation = 15.544002 kcal Electronic energy + Delta-G solvation = -25488.330105 eV Core-core repulsion = 21399.058934 eV Total energy + Delta-G solvation = -4089.271171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.15095 -40.48606 -39.82064 -38.64485 -36.42482 -35.13485 -34.21177 -32.69635 -32.38281 -31.57240 -30.42968 -29.20556 -26.91496 -25.48842 -24.58317 -22.99707 -22.46770 -21.97853 -20.93348 -19.90712 -19.34072 -17.94819 -17.51188 -17.33447 -16.86437 -16.68345 -16.43337 -15.69125 -15.51983 -15.36330 -15.02340 -14.82679 -14.59922 -14.24186 -14.12416 -13.66315 -13.07416 -12.97865 -12.78616 -12.51781 -12.38996 -11.97620 -11.76880 -11.75799 -11.51349 -11.04913 -10.95479 -10.92877 -10.87942 -10.72723 -10.45918 -10.32297 -9.75855 -9.39469 -9.14465 -9.13211 -8.76034 -7.95157 -6.17091 -4.24353 -0.00053 0.59439 1.09815 1.42435 1.69989 2.23740 2.83372 3.04588 3.21925 3.24490 3.31496 3.34602 3.59862 3.74746 3.98217 4.14032 4.24167 4.34142 4.43088 4.49929 4.61942 4.76344 4.88241 5.08189 5.18962 5.23845 5.25068 5.36236 5.38586 5.44070 5.60948 5.75396 5.85584 5.93619 6.12097 6.26387 7.24596 7.30437 7.36931 7.49499 7.62503 7.67807 7.94686 8.53225 8.74423 9.00106 9.42004 10.93065 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.049426 B = 0.001653 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.372317 B =16936.919319 C =17482.845606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.500 3.500 12 O -0.528 6.528 13 C 0.048 3.952 14 O -0.302 6.302 15 C 0.569 3.431 16 O -0.483 6.483 17 C 0.173 3.827 18 N -0.445 5.445 19 C 0.199 3.801 20 N -0.249 5.249 21 C 0.126 3.874 22 C -0.101 4.101 23 C -0.099 4.099 24 C -0.112 4.112 25 C -0.097 4.097 26 C -0.119 4.119 27 N -0.241 5.241 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.393 0.607 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.234 0.766 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 -34.665 0.002 35.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.283 3.717 12 O -0.405 6.405 13 C -0.029 4.029 14 O -0.215 6.215 15 C 0.408 3.592 16 O -0.367 6.367 17 C -0.104 4.104 18 N -0.168 5.168 19 C -0.096 4.096 20 N -0.038 5.038 21 C 0.035 3.965 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.131 4.131 25 C -0.115 4.115 26 C -0.139 4.139 27 N -0.081 5.081 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.226 0.774 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.250 0.750 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.918 -34.251 0.007 34.602 hybrid contribution 0.763 0.858 -0.001 1.148 sum 5.681 -33.392 0.006 33.872 Atomic orbital electron populations 1.69985 1.06111 1.27271 1.48809 1.24952 0.94923 0.99479 0.94641 0.86338 0.79821 0.82866 0.77746 1.19608 1.20796 1.20790 1.21253 0.93384 0.90293 1.53340 0.91689 1.19187 0.88173 0.81490 0.98100 1.46341 1.11515 1.05214 1.72609 1.19801 0.89077 0.83893 0.78978 1.90738 1.16195 1.84423 1.49157 1.23025 0.94571 0.80281 1.05022 1.86682 1.38814 1.13163 1.82804 1.18676 0.84154 0.82671 0.73705 1.90905 1.13684 1.87313 1.44792 1.22255 0.87849 0.91434 1.08819 1.71590 1.14735 1.13243 1.17201 1.26814 0.92454 0.88839 1.01454 1.44664 1.05163 1.05598 1.48421 1.17682 0.95796 0.77251 1.05732 1.21116 0.95103 0.96747 0.99130 1.21174 1.00159 0.91947 0.98465 1.21405 0.92541 1.00558 0.98594 1.21057 0.97661 0.94108 0.98714 1.20903 0.97799 0.93102 1.02120 1.74347 1.18212 0.96572 1.18926 0.92445 0.95193 0.95199 0.77412 0.88037 0.88029 0.74987 0.83838 0.84498 0.84903 0.84340 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.04 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 8 H 0.06 1.64 7.60 -52.48 -0.40 1.24 16 9 C 0.25 6.64 5.43 -5.20 -0.03 6.61 16 10 N -0.71 -14.83 5.55 -61.48 -0.34 -15.17 16 11 C 0.50 10.33 7.91 -10.98 -0.09 10.24 16 12 O -0.53 -13.39 16.50 -14.11 -0.23 -13.62 16 13 C 0.05 0.77 5.95 36.01 0.21 0.99 16 14 O -0.30 -5.37 9.77 -47.25 -0.46 -5.83 16 15 C 0.57 9.34 7.97 34.60 0.28 9.61 16 16 O -0.48 -8.21 16.88 -19.25 -0.32 -8.53 16 17 C 0.17 2.62 7.99 -156.28 -1.25 1.37 16 18 N -0.44 -6.26 11.42 -12.31 -0.14 -6.40 16 19 C 0.20 1.86 11.93 -90.21 -1.08 0.78 16 20 N -0.25 -2.51 3.52 -11.77 -0.04 -2.55 16 21 C 0.13 0.93 6.67 -83.60 -0.56 0.37 16 22 C -0.10 -0.70 9.61 -39.40 -0.38 -1.08 16 23 C -0.10 -0.44 10.04 -39.61 -0.40 -0.84 16 24 C -0.11 -0.37 10.04 -39.55 -0.40 -0.76 16 25 C -0.10 -0.30 10.04 -39.61 -0.40 -0.70 16 26 C -0.12 -0.52 9.45 -39.40 -0.37 -0.89 16 27 N -0.24 -3.23 11.32 32.06 0.36 -2.87 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 32 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.23 0.87 7.01 -52.49 -0.37 0.51 16 35 H 0.14 1.11 7.68 -52.49 -0.40 0.71 16 36 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 37 H 0.13 0.13 8.06 -52.49 -0.42 -0.29 16 38 H 0.14 0.10 8.06 -52.49 -0.42 -0.33 16 39 H 0.14 0.25 6.71 -52.49 -0.35 -0.10 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -37.64 359.23 -8.87 -46.51 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.96 Total: 0.20 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: -4.87 Total: 12.34 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.58 Total: -52.30 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.02 Total: -27.99 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.64 -8.87 -46.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768683964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.053 kcal (2) G-P(sol) polarization free energy of solvation -37.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds