Wall clock time and date at job start Tue Mar 31 2020 05:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99553 * 2 1 4 4 H 1.48495 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46996 * 299.99661 * 3 2 1 6 6 H 1.48493 * 109.47025 * 59.99691 * 3 2 1 7 7 C 1.37875 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99978 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46968 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99856 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00206 * 359.97438 * 11 10 9 13 13 C 1.50706 * 120.00173 * 179.97438 * 11 10 9 14 14 O 1.45194 * 109.47179 * 179.97438 * 13 11 10 15 15 C 1.34728 * 116.99769 * 179.97438 * 14 13 11 16 16 O 1.21480 * 120.00054 * 0.02562 * 15 14 13 17 17 C 1.47714 * 119.99852 * 180.02562 * 15 14 13 18 18 N 1.34607 * 126.02945 * 359.96954 * 17 15 14 19 19 C 1.30851 * 107.29094 * 180.02562 * 18 17 15 20 20 N 1.34905 * 107.59950 * 0.02562 * 19 18 17 21 21 C 1.40143 * 125.76323 * 179.97438 * 20 19 18 22 22 C 1.38853 * 120.06452 * 179.97438 * 21 20 19 23 23 C 1.38111 * 119.93168 * 180.02562 * 22 21 20 24 24 C 1.38285 * 120.06839 * 359.97438 * 23 22 21 25 25 C 1.38281 * 120.13633 * 0.02562 * 24 23 22 26 26 C 1.38122 * 120.06846 * 0.02562 * 25 24 23 27 27 N 1.28848 * 108.46838 * 0.25756 * 20 19 18 28 28 H 0.97003 * 120.00731 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.47289 * 59.99793 * 9 7 2 30 30 H 1.08999 * 109.46726 * 299.99695 * 9 7 2 31 31 H 0.97000 * 120.00419 * 359.97438 * 10 9 7 32 32 H 1.09004 * 109.46806 * 59.99540 * 13 11 10 33 33 H 1.08995 * 109.47171 * 300.00340 * 13 11 10 34 34 H 1.07999 * 126.19948 * 179.97438 * 19 18 17 35 35 H 1.08001 * 120.03616 * 0.02562 * 22 21 20 36 36 H 1.08000 * 119.96912 * 180.02562 * 23 22 21 37 37 H 1.07994 * 119.93477 * 179.74935 * 24 23 22 38 38 H 1.07996 * 119.97103 * 179.97438 * 25 24 23 39 39 H 1.07997 * 120.03741 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6125 0.0018 11 6 1.7540 -4.8833 0.0015 12 8 0.5616 -5.1050 0.0006 13 6 2.7334 -6.0287 0.0022 14 8 2.0074 -7.2862 0.0023 15 6 2.7413 -8.4160 0.0023 16 8 3.9544 -8.3524 0.0028 17 6 2.0708 -9.7322 0.0019 18 7 0.7414 -9.9435 0.0020 19 6 0.5534 -11.2385 0.0020 20 7 1.7674 -11.8269 0.0025 21 6 2.0085 -13.2074 0.0033 22 6 3.3119 -13.6859 0.0032 23 6 3.5463 -15.0470 0.0034 24 6 2.4845 -15.9329 0.0042 25 6 1.1853 -15.4595 0.0042 26 6 0.9444 -14.0994 0.0030 27 7 2.6677 -10.9051 0.0083 28 1 -0.4851 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 3.1569 -3.4353 0.0021 32 1 3.3595 -5.9709 0.8926 33 1 3.3607 -5.9710 -0.8873 34 1 -0.4007 -11.7445 0.0025 35 1 4.1416 -12.9946 0.0030 36 1 4.5599 -15.4199 0.0038 37 1 2.6703 -16.9968 0.0002 38 1 0.3581 -16.1537 0.0044 39 1 -0.0705 -13.7302 0.0035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768683964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:41 Heat of formation + Delta-G solvation = -9.285991 kcal Electronic energy + Delta-G solvation = -25489.406814 eV Core-core repulsion = 21399.058934 eV Total energy + Delta-G solvation = -4090.347880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.99649 -41.78098 -40.42344 -40.17706 -37.76371 -36.19321 -35.83522 -34.41986 -33.46465 -31.96904 -31.31572 -30.53913 -28.68015 -26.57782 -25.18316 -24.60636 -23.42069 -22.61124 -21.93580 -21.67619 -20.07772 -19.28671 -18.82872 -18.34960 -18.18855 -17.58788 -17.32364 -17.22049 -16.98994 -16.37556 -16.20344 -15.90947 -15.82537 -15.21729 -14.75819 -14.63967 -14.47095 -14.13880 -14.08427 -13.86982 -13.69694 -13.55384 -12.91067 -12.75369 -12.71918 -12.30462 -12.27084 -12.21898 -12.10374 -12.05396 -11.78979 -11.46456 -11.32521 -10.94670 -10.82734 -10.07896 -9.93565 -9.62442 -8.28999 -6.45642 -0.64330 0.18488 0.28092 0.50976 1.00784 1.27132 1.45087 1.45654 1.53323 1.59433 1.73431 2.25639 2.44445 2.69855 2.86038 3.06329 3.16045 3.50313 3.66059 3.82906 3.85795 3.97629 4.00640 4.18368 4.28466 4.36338 4.40403 4.61636 4.78562 4.92525 4.97796 5.09258 5.22426 5.22592 5.30025 5.41752 5.46667 5.47343 5.63059 5.82315 5.87131 6.18675 6.63193 6.68411 6.76898 7.20602 7.35493 8.83401 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.049426 B = 0.001653 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.372317 B =16936.919319 C =17482.845606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.265 3.735 10 N -0.696 5.696 11 C 0.501 3.499 12 O -0.581 6.581 13 C 0.058 3.942 14 O -0.324 6.324 15 C 0.573 3.427 16 O -0.496 6.496 17 C 0.141 3.859 18 N -0.487 5.487 19 C 0.214 3.786 20 N -0.239 5.239 21 C 0.088 3.912 22 C -0.122 4.122 23 C -0.105 4.105 24 C -0.104 4.104 25 C -0.094 4.094 26 C -0.111 4.111 27 N -0.255 5.255 28 H 0.269 0.731 29 H -0.007 1.007 30 H -0.007 1.007 31 H 0.414 0.586 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.286 0.714 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.182 -37.072 0.003 37.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.348 5.348 11 C 0.286 3.714 12 O -0.461 6.461 13 C -0.018 4.018 14 O -0.237 6.237 15 C 0.414 3.586 16 O -0.381 6.381 17 C -0.134 4.134 18 N -0.211 5.211 19 C -0.079 4.079 20 N -0.029 5.029 21 C -0.001 4.001 22 C -0.142 4.142 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.113 4.113 26 C -0.131 4.131 27 N -0.096 5.096 28 H 0.078 0.922 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.250 0.750 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.301 0.699 35 H 0.140 0.860 36 H 0.170 0.830 37 H 0.179 0.821 38 H 0.189 0.811 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.003 -36.699 0.008 37.186 hybrid contribution 0.396 1.302 -0.001 1.361 sum 6.399 -35.397 0.006 35.970 Atomic orbital electron populations 1.70143 1.08267 1.28556 1.49915 1.26058 0.95770 1.03881 0.93831 0.85087 0.79086 0.77270 0.77617 1.17615 1.20520 1.20509 1.21649 0.94479 0.90329 1.52949 0.89489 1.18656 0.88600 0.83760 0.94677 1.46000 1.11789 1.04474 1.72520 1.20563 0.89168 0.84670 0.76973 1.90712 1.18912 1.85241 1.51274 1.22971 0.92769 0.78048 1.08026 1.86654 1.39923 1.13958 1.83201 1.18816 0.84022 0.82730 0.73054 1.90873 1.14012 1.87509 1.45717 1.22057 0.88595 0.91224 1.11553 1.71511 1.14474 1.15991 1.19144 1.27715 0.93713 0.87650 0.98835 1.44887 1.04928 1.06242 1.46804 1.18113 0.97058 0.76121 1.08826 1.21149 0.94705 0.97743 1.00607 1.21411 1.01693 0.91006 0.98245 1.21832 0.92264 1.01797 0.96330 1.21516 0.98634 0.93968 0.97154 1.21308 0.98216 0.93211 1.00413 1.74264 1.19590 0.96663 1.19118 0.92215 0.98900 0.98910 0.74987 0.84915 0.84904 0.69867 0.85950 0.82972 0.82090 0.81116 0.81611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.99 42.44 29.54 68.60 2.03 44.47 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.56 -30.19 9.28 25.60 0.24 -29.95 16 8 H 0.09 4.24 7.60 -2.91 -0.02 4.21 16 9 C 0.27 14.63 5.43 85.63 0.46 15.09 16 10 N -0.70 -29.59 5.55 -466.80 -2.59 -32.18 16 11 C 0.50 21.13 7.91 87.66 0.69 21.83 16 12 O -0.58 -30.88 16.50 15.76 0.26 -30.62 16 13 C 0.06 1.83 5.95 71.24 0.42 2.25 16 14 O -0.32 -11.79 9.77 -49.99 -0.49 -12.27 16 15 C 0.57 19.36 7.97 70.33 0.56 19.92 16 16 O -0.50 -17.07 16.88 19.90 0.34 -16.74 16 17 C 0.14 4.42 7.99 137.03 1.09 5.52 16 18 N -0.49 -13.93 11.42 -192.84 -2.20 -16.13 16 19 C 0.21 3.75 11.93 180.20 2.15 5.90 16 20 N -0.24 -4.75 3.52 -191.15 -0.67 -5.42 16 21 C 0.09 1.21 6.67 38.11 0.25 1.46 16 22 C -0.12 -1.68 9.61 22.39 0.22 -1.47 16 23 C -0.11 -0.77 10.04 22.25 0.22 -0.55 16 24 C -0.10 -0.32 10.04 22.29 0.22 -0.10 16 25 C -0.09 -0.21 10.04 22.25 0.22 0.01 16 26 C -0.11 -0.63 9.45 22.39 0.21 -0.42 16 27 N -0.25 -7.06 11.32 -52.47 -0.59 -7.65 16 28 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.41 14.06 8.32 -92.71 -0.77 13.29 16 32 H 0.13 3.37 8.14 -2.38 -0.02 3.35 16 33 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.29 1.21 7.01 -2.91 -0.02 1.19 16 35 H 0.12 2.11 7.68 -2.91 -0.02 2.09 16 36 H 0.15 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.16 -0.40 8.06 -2.91 -0.02 -0.42 16 38 H 0.17 -0.68 8.06 -2.91 -0.02 -0.70 16 39 H 0.17 -0.12 6.71 -2.91 -0.02 -0.14 16 Total: -1.00 -87.88 359.23 4.14 -83.74 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.35 Total: 8.57 kcal Atomic # 6 Polarization: 32.77 SS G_CDS: 7.44 Total: 40.20 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -5.77 Total: -117.35 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: 0.11 Total: -59.63 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -87.88 4.14 -83.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768683964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.454 kcal (2) G-P(sol) polarization free energy of solvation -87.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds